Mutalik, Vivek

TitleBiochemist Research Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentEnviron Genomics & Systems Bio
Address1 Cyclotron Road
Berkeley CA 94720
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Cambray G, Guimaraes JC, Mutalik V, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res. 2016 08 19; 44(14):7006. PMID: 27131373.
      View in: PubMed
    2. Bassalo MC, Garst AD, Halweg-Edwards AL, Grau WC, Domaille DW, Mutalik V, Arkin AP, Gill RT. Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli. ACS Synth Biol. 2016 07 15; 5(7):561-8. PMID: 27072506.
      View in: PubMed
    3. Javidpour P, Deutsch S, Mutalik V, Hillson NJ, Petzold CJ, Keasling JD, Beller HR. Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. PLoS One. 2016; 11(3):e0151087. PMID: 26975050; PMCID: PMC4790861.
    4. Freed EF, Winkler JD, Weiss SJ, Garst AD, Mutalik V, Arkin AP, Knight R, Gill RT. Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits. ACS Synth Biol. 2015 Nov 20; 4(11):1244-53. PMID: 26478262.
      View in: PubMed
    5. Linshiz G, Stawski N, Goyal G, Bi C, Poust S, Sharma M, Mutalik V, Keasling JD, Hillson NJ. PR-PR: cross-platform laboratory automation system. ACS Synth Biol. 2014 Aug 15; 3(8):515-24. PMID: 25126893.
      View in: PubMed
    6. Kosuri S, Goodman DB, Cambray G, Mutalik V, Gao Y, Arkin AP, Endy D, Church GM. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proc Natl Acad Sci U S A. 2013 Aug 20; 110(34):14024-9. PMID: 23924614; PMCID: PMC3752251.
    7. Cambray G, Guimaraes JC, Mutalik V, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res. 2013 May; 41(9):5139-48. PMID: 23511967; PMCID: PMC3643576.
    8. Mutalik V, Guimaraes JC, Cambray G, Lam C, Christoffersen MJ, Mai QA, Tran AB, Paull M, Keasling JD, Arkin AP, Endy D. Precise and reliable gene expression via standard transcription and translation initiation elements. Nat Methods. 2013 Apr; 10(4):354-60. PMID: 23474465.
      View in: PubMed
    9. Mutalik V, Guimaraes JC, Cambray G, Mai QA, Christoffersen MJ, Martin L, Yu A, Lam C, Rodriguez C, Bennett G, Keasling JD, Endy D, Arkin AP. Quantitative estimation of activity and quality for collections of functional genetic elements. Nat Methods. 2013 Apr; 10(4):347-53. PMID: 23474467.
      View in: PubMed
    10. Goldbeck CP, Jensen HM, TerAvest MA, Beedle N, Appling Y, Hepler M, Cambray G, Mutalik V, Angenent LT, Ajo-Franklin CM. Tuning promoter strengths for improved synthesis and function of electron conduits in Escherichia coli. ACS Synth Biol. 2013 Mar 15; 2(3):150-9. PMID: 23656438.
      View in: PubMed
    11. Liu CC, Qi L, Lucks JB, Segall-Shapiro TH, Wang D, Mutalik V, Arkin AP. An adaptor from translational to transcriptional control enables predictable assembly of complex regulation. Nat Methods. 2012 Nov; 9(11):1088-94. PMID: 23023598.
      View in: PubMed
    12. Mutalik V, Qi L, Guimaraes JC, Lucks JB, Arkin AP. Rationally designed families of orthogonal RNA regulators of translation. Nat Chem Biol. 2012 Mar 25; 8(5):447-54. PMID: 22446835.
      View in: PubMed
    13. Qi L, Lucks JB, Liu CC, Mutalik V, Arkin AP. Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals. Nucleic Acids Res. 2012 Jul; 40(12):5775-86. PMID: 22383579; PMCID: PMC3384300.
    14. Rhodius VA, Mutalik V, Gross CA. Predicting the strength of UP-elements and full-length E. coli sE promoters. Nucleic Acids Res. 2012 Apr; 40(7):2907-24. PMID: 22156164; PMCID: PMC3326320.
    15. Cambray G, Mutalik V, Arkin AP. Toward rational design of bacterial genomes. Curr Opin Microbiol. 2011 Oct; 14(5):624-30. PMID: 21865081.
      View in: PubMed
    16. Lucks JB, Qi L, Mutalik V, Wang D, Arkin AP. Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc Natl Acad Sci U S A. 2011 May 24; 108(21):8617-22. PMID: 21555549; PMCID: PMC3102349.
    17. Rhodius VA, Mutalik V. Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, sigmaE. Proc Natl Acad Sci U S A. 2010 Feb 16; 107(7):2854-9. PMID: 20133665; PMCID: PMC2840333.
    18. Mutalik V, Nonaka G, Ades SE, Rhodius VA, Gross CA. Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica. J Bacteriol. 2009 Dec; 191(23):7279-87. PMID: 19783623; PMCID: PMC2786571.
    19. Mutalik V, Venkatesh KV. A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior. Biosystems. 2007 Jul-Aug; 90(1):1-19. PMID: 16945478.
      View in: PubMed
    20. Grigorova IL, Phleger NJ, Mutalik V, Gross CA. Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA. Proc Natl Acad Sci U S A. 2006 Apr 04; 103(14):5332-7. PMID: 16567622; PMCID: PMC1459355.
    21. Mutalik V, Venkatesh KV. Effect of the MAPK cascade structure, nuclear translocation and regulation of transcription factors on gene expression. Biosystems. 2006 Aug; 85(2):144-57. PMID: 16483710.
      View in: PubMed
    22. Mutalik V, Venkatesh KV. Quantification of the glycogen cascade system: the ultrasensitive responses of liver glycogen synthase and muscle phosphorylase are due to distinctive regulatory designs. Theor Biol Med Model. 2005 May 20; 2:19. PMID: 15907212; PMCID: PMC1180476.
    23. Giri L, Mutalik V, Venkatesh KV. A steady state analysis indicates that negative feedback regulation of PTP1B by Akt elicits bistability in insulin-stimulated GLUT4 translocation. Theor Biol Med Model. 2004 Aug 03; 1:2. PMID: 15291972; PMCID: PMC516236.
    24. Mutalik V, Singh AP, Edwards JS, Venkatesh KV. Robust global sensitivity in multiple enzyme cascade system explains how the downstream cascade structure may remain unaffected by cross-talk. FEBS Lett. 2004 Jan 30; 558(1-3):79-84. PMID: 14759520.
      View in: PubMed
    25. Mutalik V, Singh AP, Edwards JS, Venkatesh KV. Equilibrium analysis of allosteric interactions shows zero-order effects. Cell Biochem Biophys. 2004; 41(2):179-92. PMID: 15475608.
      View in: PubMed
    26. Mutalik V, Shah P, Venkatesh KV. Allosteric interactions and bifunctionality make the response of glutamine synthetase cascade system of Escherichia coli robust and ultrasensitive. J Biol Chem. 2003 Jul 18; 278(29):26327-32. PMID: 12676964.
      View in: PubMed

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