Loading...
Sign in to edit your profile (add interests, overview, photo, etc.)

    Singan, Vasanth

    TitleBusiness/Systems Analyst 4
    SchoolLawrence Berkeley National Lab
    DepartmentJoint Genome Institute
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone925/296-5642
    vCardDownload vCard

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Thieme N, Wu VW, Dietschmann A, Salamov AA, Wang M, Johnson J, Singan V, Grigoriev IV, Glass NL, Somerville CR, Benz JP. The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa. Biotechnol Biofuels. 2017; 10:149. PMID: 28616073.
        View in: PubMed
      2. Xiong Y, Wu VW, Lubbe A, Qin L, Deng S, Kennedy M, Bauer D, Singan V, Barry K, Northen TR, Grigoriev IV, Glass NL. A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism. PLoS Genet. 2017 May; 13(5):e1006737. PMID: 28467421.
        View in: PubMed
      3. Doré J, Kohler A, Dubost A, Hundley H, Singan V, Peng Y, Kuo A, Grigoriev IV, Martin F, Marmeisse R, Gay AG. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environ Microbiol. 2017 Jan 11. PMID: 28076886.
        View in: PubMed
      4. Fochi V, Chitarra W, Kohler A, Voyron S, Singan V, Lindquist EA, Barry KW, Girlanda M, Grigoriev IV, Martin F, Balestrini R, Perotto S. Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas. New Phytol. 2016 Nov 11. PMID: 27859287.
        View in: PubMed
      5. Singan V, Simpson JC. Implementation of the Rank-Weighted Co-localization (RWC) algorithm in multiple image analysis platforms for quantitative analysis of microscopy images. Source Code Biol Med. 2016; 11:2. PMID: 26884809.
        View in: PubMed
      6. Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan V, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC. Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses. PLoS Pathog. 2015 Apr; 11(4):e1004872. PMID: 25906371.
        View in: PubMed
      7. Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan V, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald PC. Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses. PLoS Pathog. 2015 Mar; 11(3):e1004809. PMID: 25821973.
        View in: PubMed
      8. Stadler C, Rexhepaj E, Singan V, Murphy RF, Pepperkok R, Uhlén M, Simpson JC, Lundberg E. Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells. Nat Methods. 2013 Apr; 10(4):315-23. PMID: 23435261.
        View in: PubMed
      9. Singan V, Handzic K, Simpson JC. Quantitative image analysis approaches for probing Rab GTPase localization and function in mammalian cells. Biochem Soc Trans. 2012 Dec 1; 40(6):1389-93. PMID: 23176486.
        View in: PubMed
      10. Singan V, Handzic K, Curran KM, Simpson JC. A method for improved clustering and classification of microscopy images using quantitative co-localization coefficients. BMC Res Notes. 2012; 5:281. PMID: 22681635.
        View in: PubMed
      11. Simpson JC, Joggerst B, Laketa V, Verissimo F, Cetin C, Erfle H, Bexiga MG, Singan V, Hériché JK, Neumann B, Mateos A, Blake J, Bechtel S, Benes V, Wiemann S, Ellenberg J, Pepperkok R. Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway. Nat Cell Biol. 2012 Jul; 14(7):764-74. PMID: 22660414.
        View in: PubMed
      12. Singan V, Jones TR, Curran KM, Simpson JC. Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images. BMC Bioinformatics. 2011; 12:407. PMID: 22017789.
        View in: PubMed
      13. Udwary DW, Zeigler L, Asolkar RN, Singan V, Lapidus A, Fenical W, Jensen PR, Moore BS. Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica. Proc Natl Acad Sci U S A. 2007 Jun 19; 104(25):10376-81. PMID: 17563368.
        View in: PubMed
      14. Colbourne JK, Singan V, Gilbert DG. wFleaBase: the Daphnia genome database. BMC Bioinformatics. 2005; 6:45. PMID: 15752432.
        View in: PubMed

      A U.S. Department of Energy National Laboratory Managed by the University of California

      This site is running Profiles RNS version v2.10.0-410-g1c0064ed.