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Backman, Tyler

TitleBioinformaticist PD Fellow
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
Phone541/231-0288
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Yuzawa S, Backman T, Keasling JD, Katz L. Synthetic biology of polyketide synthases. J Ind Microbiol Biotechnol. 2018 Feb 09. PMID: 29423743.
      View in: PubMed
    2. Backman T, Ando D, Singh J, Keasling JD, García Martín H. Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis. Metabolites. 2018 Jan 04; 8(1). PMID: 29300340.
      View in: PubMed
    3. Eng CH, Backman T, Bailey CB, Magnan C, García Martín H, Katz L, Baldi P, Keasling JD. ClusterCAD: a computational platform for type I modular polyketide synthase design. Nucleic Acids Res. 2017 Oct 11. PMID: 29040649.
      View in: PubMed
    4. Morrell WC, Birkel GW, Forrer M, Lopez T, Backman T, Dussault M, Petzold CJ, Baidoo EEK, Costello Z, Ando D, Alonso-Gutierrez J, George KW, Mukhopadhyay A, Vaino I, Keasling JD, Adams PD, Hillson NJ, Garcia Martin H. The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization. ACS Synth Biol. 2017 12 15; 6(12):2248-2259. PMID: 28826210.
      View in: PubMed
    5. Birkel GW, Ghosh A, Kumar VS, Weaver D, Ando D, Backman T, Arkin AP, Keasling JD, Martín HG. Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. BMC Bioinformatics. 2017 Apr 18; 18(1):219. PMID: 28420344.
      View in: PubMed
    6. Birkel GW, Ghosh A, Kumar VS, Weaver D, Ando D, Backman T, Arkin AP, Keasling JD, Martín HG. The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. BMC Bioinformatics. 2017 Apr 05; 18(1):205. PMID: 28381205.
      View in: PubMed
    7. Backman T, Evans DS, Girke T. Large-scale bioactivity analysis of the small-molecule assayed proteome. PLoS One. 2017; 12(2):e0171413. PMID: 28178331.
      View in: PubMed
    8. H Backman TW, Girke T. systemPipeR: NGS workflow and report generation environment. BMC Bioinformatics. 2016 Sep 20; 17:388. PMID: 27650223.
      View in: PubMed
    9. Backman T, Girke T. bioassayR: Cross-Target Analysis of Small Molecule Bioactivity. J Chem Inf Model. 2016 07 25; 56(7):1237-42. PMID: 27367556.
      View in: PubMed
    10. Backman T, Girke T. Cheminformatic analysis of high-throughput compound screens. Methods Mol Biol. 2014; 1056:145-57. PMID: 24306871.
      View in: PubMed
    11. Wang Y, Backman T, Horan K, Girke T. fmcsR: mismatch tolerant maximum common substructure searching in R. Bioinformatics. 2013 Nov 01; 29(21):2792-4. PMID: 23962615.
      View in: PubMed
    12. Zou Z, Saha TT, Roy S, Shin SW, Backman T, Girke T, White KP, Raikhel AS. Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression. Proc Natl Acad Sci U S A. 2013 Jun 11; 110(24):E2173-81. PMID: 23633570; PMCID: PMC3683779.
    13. Backman T, Cao Y, Girke T. ChemMine tools: an online service for analyzing and clustering small molecules. Nucleic Acids Res. 2011 Jul; 39(Web Server issue):W486-91. PMID: 21576229; PMCID: PMC3125754.
    14. Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman T, Givan SA, Carrington JC. Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA. 2009 May; 15(5):992-1002. PMID: 19307293; PMCID: PMC2673065.
    15. Backman T, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, Fahlgren N, Givan SA, Carrington JC, Kasschau KD. Update of ASRP: the Arabidopsis Small RNA Project database. Nucleic Acids Res. 2008 Jan; 36(Database issue):D982-5. PMID: 17999994; PMCID: PMC2238918.

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