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Marchesini, Stefano

Title
InstitutionLawrence Berkeley National Lab
DepartmentComputational Research
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/486-7735
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Chang H, Enfedaque P, Lou Y, Marchesini S. Partially coherent ptychography by gradient decomposition of the probe. Acta Crystallogr A Found Adv. 2018 May 01; 74(Pt 3):157-169. PMID: 29724963.
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    2. Yu YS, Farmand M, Kim C, Liu Y, Grey CP, Strobridge FC, Tyliszczak T, Celestre R, Denes P, Joseph J, Krishnan H, Maia FRNC, Kilcoyne ALD, Marchesini S, Leite TPC, Warwick T, Padmore H, Cabana J, Shapiro DA. Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography. Nat Commun. 2018 03 02; 9(1):921. PMID: 29500344.
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    3. Daurer BJ, Krishnan H, Perciano T, Maia FRNC, Shapiro DA, Sethian JA, Marchesini S. Nanosurveyor: a framework for real-time data processing. Adv Struct Chem Imaging. 2017; 3(1):7. PMID: 28261545.
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    4. Zhu X, Hitchcock AP, Bazylinski DA, Denes P, Joseph J, Lins U, Marchesini S, Shiu HW, Tyliszczak T, Shapiro DA. Measuring spectroscopy and magnetism of extracted and intracellular magnetosomes using soft X-ray ptychography. Proc Natl Acad Sci U S A. 2016 12 20; 113(51):E8219-E8227. PMID: 27930297.
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    5. Li Y, Meyer S, Lim J, Lee SC, Gent WE, Marchesini S, Krishnan H, Tyliszczak T, Shapiro D, Kilcoyne AL, Chueh WC. Effects of Particle Size, Electronic Connectivity, and Incoherent Nanoscale Domains on the Sequence of Lithiation in LiFePO4 Porous Electrodes. Adv Mater. 2015 Nov; 27(42):6591-7. PMID: 26423560.
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    6. Yu YS, Kim C, Shapiro DA, Farmand M, Qian D, Tyliszczak T, Kilcoyne AL, Celestre R, Marchesini S, Joseph J, Denes P, Warwick T, Strobridge FC, Grey CP, Padmore H, Meng YS, Kostecki R, Cabana J. Dependence on Crystal Size of the Nanoscale Chemical Phase Distribution and Fracture in LixFePO4. Nano Lett. 2015 Jul 08; 15(7):4282-8. PMID: 26061698.
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    7. Aquila A, Barty A, Bostedt C, Boutet S, Carini G, dePonte D, Drell P, Doniach S, Downing KH, Earnest T, Elmlund H, Elser V, Gühr M, Hajdu J, Hastings J, Hau-Riege SP, Huang Z, Lattman EE, Maia FR, Marchesini S, Ourmazd A, Pellegrini C, Santra R, Schlichting I, Schroer C, Spence JC, Vartanyants IA, Wakatsuki S, Weis WI, Williams GJ. The linac coherent light source single particle imaging road map. Struct Dyn. 2015 Jul; 2(4):041701. PMID: 26798801; PMCID: PMC4711616.
    8. Gomez LF, Ferguson KR, Cryan JP, Bacellar C, Tanyag RM, Jones C, Schorb S, Anielski D, Belkacem A, Bernando C, Boll R, Bozek J, Carron S, Chen G, Delmas T, Englert L, Epp SW, Erk B, Foucar L, Hartmann R, Hexemer A, Huth M, Kwok J, Leone SR, Ma JH, Maia FR, Malmerberg E, Marchesini S, Neumark DM, Poon B, Prell J, Rolles D, Rudek B, Rudenko A, Seifrid M, Siefermann KR, Sturm FP, Swiggers M, Ullrich J, Weise F, Zwart P, Bostedt C, Gessner O, Vilesov AF. Helium superfluidity. Shapes and vorticities of superfluid helium nanodroplets. Science. 2014 Aug 22; 345(6199):906-9. PMID: 25146284.
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    9. Liu C, Marchesini S, Kim MK. Quantitative phase-contrast confocal microscope. Opt Express. 2014 Jul 28; 22(15):17830-9. PMID: 25089404; PMCID: PMC4162347.
    10. Kupitz C, Basu S, Grotjohann I, Fromme R, Zatsepin NA, Rendek KN, Hunter MS, Shoeman RL, White TA, Wang D, James D, Yang JH, Cobb DE, Reeder B, Sierra RG, Liu H, Barty A, Aquila AL, Deponte D, Kirian RA, Bari S, Bergkamp JJ, Beyerlein KR, Bogan MJ, Caleman C, Chao TC, Conrad CE, Davis KM, Fleckenstein H, Galli L, Hau-Riege SP, Kassemeyer S, Laksmono H, Liang M, Lomb L, Marchesini S, Martin AV, Messerschmidt M, Milathianaki D, Nass K, Ros A, Roy-Chowdhury S, Schmidt K, Seibert M, Steinbrener J, Stellato F, Yan L, Yoon C, Moore TA, Moore AL, Pushkar Y, Williams GJ, Boutet S, Doak RB, Weierstall U, Frank M, Chapman HN, Spence JC, Fromme P. Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser. Nature. 2014 Sep 11; 513(7517):261-5. PMID: 25043005; PMCID: PMC4821544.
    11. Park HJ, Loh ND, Sierra RG, Hampton CY, Starodub D, Martin AV, Barty A, Aquila A, Schulz J, Steinbrener J, Shoeman RL, Lomb L, Kassemeyer S, Bostedt C, Bozek J, Epp SW, Erk B, Hartmann R, Rolles D, Rudenko A, Rudek B, Foucar L, Kimmel N, Weidenspointner G, Hauser G, Holl P, Pedersoli E, Liang M, Hunter MS, Gumprecht L, Coppola N, Wunderer C, Graafsma H, Maia FR, Ekeberg T, Hantke M, Fleckenstein H, Hirsemann H, Nass K, Tobias HJ, Farquar GR, Benner WH, Hau-Riege S, Reich C, Hartmann A, Soltau H, Marchesini S, Bajt S, Barthelmess M, Strueder L, Ullrich J, Bucksbaum P, Frank M, Schlichting I, Chapman HN, Bogan MJ, Elser V. Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers. Opt Express. 2013 Nov 18; 21(23):28729-42. PMID: 24514385.
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    12. Loh ND, Starodub D, Lomb L, Hampton CY, Martin AV, Sierra RG, Barty A, Aquila A, Schulz J, Steinbrener J, Shoeman RL, Kassemeyer S, Bostedt C, Bozek J, Epp SW, Erk B, Hartmann R, Rolles D, Rudenko A, Rudek B, Foucar L, Kimmel N, Weidenspointner G, Hauser G, Holl P, Pedersoli E, Liang M, Hunter MS, Gumprecht L, Coppola N, Wunderer C, Graafsma H, Maia FR, Ekeberg T, Hantke M, Fleckenstein H, Hirsemann H, Nass K, White TA, Tobias HJ, Farquar GR, Benner WH, Hau-Riege S, Reich C, Hartmann A, Soltau H, Marchesini S, Bajt S, Barthelmess M, Strueder L, Ullrich J, Bucksbaum P, Frank M, Schlichting I, Chapman HN, Bogan MJ. Sensing the wavefront of x-ray free-electron lasers using aerosol spheres. Opt Express. 2013 May 20; 21(10):12385-94. PMID: 23736456.
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    13. Chen G, Modestino MA, Poon BK, Schirotzek A, Marchesini S, Segalman RA, Hexemer A, Zwart PH. Structure determination of Pt-coated Au dumbbells via fluctuation X-ray scattering. J Synchrotron Radiat. 2012 Sep; 19(Pt 5):695-700. PMID: 22898947.
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    14. Kassemeyer S, Steinbrener J, Lomb L, Hartmann E, Aquila A, Barty A, Martin AV, Hampton CY, Bajt S, Barthelmess M, Barends TR, Bostedt C, Bott M, Bozek JD, Coppola N, Cryle M, DePonte DP, Doak RB, Epp SW, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hartmann A, Hartmann R, Hauser G, Hirsemann H, Hömke A, Holl P, Jönsson O, Kimmel N, Krasniqi F, Liang M, Maia FR, Marchesini S, Nass K, Reich C, Rolles D, Rudek B, Rudenko A, Schmidt C, Schulz J, Shoeman RL, Sierra RG, Soltau H, Spence JC, Starodub D, Stellato F, Stern S, Stier G, Svenda M, Weidenspointner G, Weierstall U, White TA, Wunderer C, Frank M, Chapman HN, Ullrich J, Strüder L, Bogan MJ, Schlichting I. Femtosecond free-electron laser x-ray diffraction data sets for algorithm development. Opt Express. 2012 Feb 13; 20(4):4149-58. PMID: 22418172.
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    15. Aquila A, Hunter MS, Doak RB, Kirian RA, Fromme P, White TA, Andreasson J, Arnlund D, Bajt S, Barends TR, Barthelmess M, Bogan MJ, Bostedt C, Bottin H, Bozek JD, Caleman C, Coppola N, Davidsson J, DePonte DP, Elser V, Epp SW, Erk B, Fleckenstein H, Foucar L, Frank M, Fromme R, Graafsma H, Grotjohann I, Gumprecht L, Hajdu J, Hampton CY, Hartmann A, Hartmann R, Hau-Riege S, Hauser G, Hirsemann H, Holl P, Holton JM, Hömke A, Johansson L, Kimmel N, Kassemeyer S, Krasniqi F, Kühnel KU, Liang M, Lomb L, Malmerberg E, Marchesini S, Martin AV, Maia FR, Messerschmidt M, Nass K, Reich C, Neutze R, Rolles D, Rudek B, Rudenko A, Schlichting I, Schmidt C, Schmidt KE, Schulz J, Seibert MM, Shoeman RL, Sierra R, Soltau H, Starodub D, Stellato F, Stern S, Strüder L, Timneanu N, Ullrich J, Wang X, Williams GJ, Weidenspointner G, Weierstall U, Wunderer C, Barty A, Spence JC, Chapman HN. Time-resolved protein nanocrystallography using an X-ray free-electron laser. Opt Express. 2012 Jan 30; 20(3):2706-16. PMID: 22330507; PMCID: PMC3413412.
    16. Johansson LC, Arnlund D, White TA, Katona G, Deponte DP, Weierstall U, Doak RB, Shoeman RL, Lomb L, Malmerberg E, Davidsson J, Nass K, Liang M, Andreasson J, Aquila A, Bajt S, Barthelmess M, Barty A, Bogan MJ, Bostedt C, Bozek JD, Caleman C, Coffee R, Coppola N, Ekeberg T, Epp SW, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hajdu J, Hampton CY, Hartmann R, Hartmann A, Hauser G, Hirsemann H, Holl P, Hunter MS, Kassemeyer S, Kimmel N, Kirian RA, Maia FR, Marchesini S, Martin AV, Reich C, Rolles D, Rudek B, Rudenko A, Schlichting I, Schulz J, Seibert MM, Sierra RG, Soltau H, Starodub D, Stellato F, Stern S, Strüder L, Timneanu N, Ullrich J, Wahlgren WY, Wang X, Weidenspointner G, Wunderer C, Fromme P, Chapman HN, Spence JC, Neutze R. Lipidic phase membrane protein serial femtosecond crystallography. Nat Methods. 2012 Jan 29; 9(3):263-5. PMID: 22286383; PMCID: PMC3438231.
    17. Barty A, Caleman C, Aquila A, Timneanu N, Lomb L, White TA, Andreasson J, Arnlund D, Bajt S, Barends TR, Barthelmess M, Bogan MJ, Bostedt C, Bozek JD, Coffee R, Coppola N, Davidsson J, Deponte DP, Doak RB, Ekeberg T, Elser V, Epp SW, Erk B, Fleckenstein H, Foucar L, Fromme P, Graafsma H, Gumprecht L, Hajdu J, Hampton CY, Hartmann R, Hartmann A, Hauser G, Hirsemann H, Holl P, Hunter MS, Johansson L, Kassemeyer S, Kimmel N, Kirian RA, Liang M, Maia FR, Malmerberg E, Marchesini S, Martin AV, Nass K, Neutze R, Reich C, Rolles D, Rudek B, Rudenko A, Scott H, Schlichting I, Schulz J, Seibert MM, Shoeman RL, Sierra RG, Soltau H, Spence JC, Stellato F, Stern S, Strüder L, Ullrich J, Wang X, Weidenspointner G, Weierstall U, Wunderer CB, Chapman HN. Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements. Nat Photonics. 2012; 6:35-40. PMID: 24078834.
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    18. Lomb L, Barends TR, Kassemeyer S, Aquila A, Epp SW, Erk B, Foucar L, Hartmann R, Rudek B, Rolles D, Rudenko A, Shoeman RL, Andreasson J, Bajt S, Barthelmess M, Barty A, Bogan MJ, Bostedt C, Bozek JD, Caleman C, Coffee R, Coppola N, Deponte DP, Doak RB, Ekeberg T, Fleckenstein H, Fromme P, Gebhardt M, Graafsma H, Gumprecht L, Hampton CY, Hartmann A, Hauser G, Hirsemann H, Holl P, Holton JM, Hunter MS, Kabsch W, Kimmel N, Kirian RA, Liang M, Maia FR, Meinhart A, Marchesini S, Martin AV, Nass K, Reich C, Schulz J, Seibert MM, Sierra R, Soltau H, Spence JC, Steinbrener J, Stellato F, Stern S, Timneanu N, Wang X, Weidenspointner G, Weierstall U, White TA, Wunderer C, Chapman HN, Ullrich J, Strüder L, Schlichting I. Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser. Phys Rev B Condens Matter Mater Phys. 2011 Dec 01; 84(21):214111. PMID: 24089594.
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    19. Spence JC, Kirian RA, Wang X, Weierstall U, Schmidt KE, White T, Barty A, Chapman HN, Marchesini S, Holton J. Phasing of coherent femtosecond X-ray diffraction from size-varying nanocrystals. Opt Express. 2011 Feb 14; 19(4):2866-73. PMID: 21369108.
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    20. Seibert MM, Ekeberg T, Maia FR, Svenda M, Andreasson J, Jönsson O, Odic D, Iwan B, Rocker A, Westphal D, Hantke M, DePonte DP, Barty A, Schulz J, Gumprecht L, Coppola N, Aquila A, Liang M, White TA, Martin A, Caleman C, Stern S, Abergel C, Seltzer V, Claverie JM, Bostedt C, Bozek JD, Boutet S, Miahnahri AA, Messerschmidt M, Krzywinski J, Williams G, Hodgson KO, Bogan MJ, Hampton CY, Sierra RG, Starodub D, Andersson I, Bajt S, Barthelmess M, Spence JC, Fromme P, Weierstall U, Kirian R, Hunter M, Doak RB, Marchesini S, Hau-Riege SP, Frank M, Shoeman RL, Lomb L, Epp SW, Hartmann R, Rolles D, Rudenko A, Schmidt C, Foucar L, Kimmel N, Holl P, Rudek B, Erk B, Hömke A, Reich C, Pietschner D, Weidenspointner G, Strüder L, Hauser G, Gorke H, Ullrich J, Schlichting I, Herrmann S, Schaller G, Schopper F, Soltau H, Kühnel KU, Andritschke R, Schröter CD, Krasniqi F, Bott M, Schorb S, Rupp D, Adolph M, Gorkhover T, Hirsemann H, Potdevin G, Graafsma H, Nilsson B, Chapman HN, Hajdu J. Single mimivirus particles intercepted and imaged with an X-ray laser. Nature. 2011 Feb 03; 470(7332):78-81. PMID: 21293374; PMCID: PMC4038304.
    21. Chapman HN, Fromme P, Barty A, White TA, Kirian RA, Aquila A, Hunter MS, Schulz J, DePonte DP, Weierstall U, Doak RB, Maia FR, Martin AV, Schlichting I, Lomb L, Coppola N, Shoeman RL, Epp SW, Hartmann R, Rolles D, Rudenko A, Foucar L, Kimmel N, Weidenspointner G, Holl P, Liang M, Barthelmess M, Caleman C, Boutet S, Bogan MJ, Krzywinski J, Bostedt C, Bajt S, Gumprecht L, Rudek B, Erk B, Schmidt C, Hömke A, Reich C, Pietschner D, Strüder L, Hauser G, Gorke H, Ullrich J, Herrmann S, Schaller G, Schopper F, Soltau H, Kühnel KU, Messerschmidt M, Bozek JD, Hau-Riege SP, Frank M, Hampton CY, Sierra RG, Starodub D, Williams GJ, Hajdu J, Timneanu N, Seibert MM, Andreasson J, Rocker A, Jönsson O, Svenda M, Stern S, Nass K, Andritschke R, Schröter CD, Krasniqi F, Bott M, Schmidt KE, Wang X, Grotjohann I, Holton JM, Barends TR, Neutze R, Marchesini S, Fromme R, Schorb S, Rupp D, Adolph M, Gorkhover T, Andersson I, Hirsemann H, Potdevin G, Graafsma H, Nilsson B, Spence JC. Femtosecond X-ray protein nanocrystallography. Nature. 2011 Feb 03; 470(7332):73-7. PMID: 21293373; PMCID: PMC3429598.
    22. Maia FR, Yang C, Marchesini S. Compressive auto-indexing in femtosecond nanocrystallography. Ultramicroscopy. 2011 Jun; 111(7):807-11. PMID: 21093986.
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    23. Steinbrener J, Nelson J, Huang X, Marchesini S, Shapiro D, Turner JJ, Jacobsen C. Data preparation and evaluation techniques for x-ray diffraction microscopy. Opt Express. 2010 Aug 30; 18(18):18598-614. PMID: 20940752; PMCID: PMC3076089.
    24. Nelson J, Huang X, Steinbrener J, Shapiro D, Kirz J, Marchesini S, Neiman AM, Turner JJ, Jacobsen C. High-resolution x-ray diffraction microscopy of specifically labeled yeast cells. Proc Natl Acad Sci U S A. 2010 Apr 20; 107(16):7235-9. PMID: 20368463; PMCID: PMC2867732.
    25. Zhao Y, Shapiro D, McGloin D, Chiu DT, Marchesini S. Direct observation of the transfer of orbital angular momentum to metal particles from a focused circularly polarized Gaussian beam. Opt Express. 2009 Dec 07; 17(25):23316-22. PMID: 20052258.
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    26. Huang X, Nelson J, Kirz J, Lima E, Marchesini S, Miao H, Neiman AM, Shapiro D, Steinbrener J, Stewart A, Turner JJ, Jacobsen C. Soft X-ray diffraction microscopy of a frozen hydrated yeast cell. Phys Rev Lett. 2009 Nov 06; 103(19):198101. PMID: 20365955; PMCID: PMC2866741.
    27. Bajt S, Chapman HN, Spiller EA, Alameda JB, Woods BW, Frank M, Bogan MJ, Barty A, Boutet S, Marchesini S, Hau-Riege SP, Hajdu J, Shapiro D. Camera for coherent diffractive imaging and holography with a soft-x-ray free-electron laser. Appl Opt. 2008 Apr 01; 47(10):1673-83. PMID: 18382600.
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    28. Bogan MJ, Benner WH, Boutet S, Rohner U, Frank M, Barty A, Seibert MM, Maia F, Marchesini S, Bajt S, Woods B, Riot V, Hau-Riege SP, Svenda M, Marklund E, Spiller E, Hajdu J, Chapman HN. Single particle X-ray diffractive imaging. Nano Lett. 2008 Jan; 8(1):310-6. PMID: 18095739.
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    29. Marchesini S. Phase retrieval and saddle-point optimization. J Opt Soc Am A Opt Image Sci Vis. 2007 Oct; 24(10):3289-96. PMID: 17912322.
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    30. Chapman HN, Hau-Riege SP, Bogan MJ, Bajt S, Barty A, Boutet S, Marchesini S, Frank M, Woods BW, Benner WH, London RA, Rohner U, Szöke A, Spiller E, Möller T, Bostedt C, Shapiro DA, Kuhlmann M, Treusch R, Plönjes E, Burmeister F, Bergh M, Caleman C, Huldt G, Seibert MM, Hajdu J. Femtosecond time-delay X-ray holography. Nature. 2007 Aug 09; 448(7154):676-9. PMID: 17687320.
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    31. Marchesini S. Invited article: a [corrected] unified evaluation of iterative projection algorithms for phase retrieval. Rev Sci Instrum. 2007 Jan; 78(1):011301. PMID: 17503899.
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    32. Chapman HN, Barty A, Marchesini S, Noy A, Hau-Riege SP, Cui C, Howells MR, Rosen R, He H, Spence JC, Weierstall U, Beetz T, Jacobsen C, Shapiro D. High-resolution ab initio three-dimensional x-ray diffraction microscopy. J Opt Soc Am A Opt Image Sci Vis. 2006 May; 23(5):1179-200. PMID: 16642197.
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    33. Hau-Riege SP, Szoke H, Chapman HN, Szoke A, Marchesini S, Noy A, He H, Howells M, Weierstall U, Spence JC. SPEDEN: reconstructing single particles from their diffraction patterns. Acta Crystallogr A. 2004 Jul; 60(Pt 4):294-305. PMID: 15218206.
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    34. Carrozzini B, Cascarano GL, De Caro L, Giacovazzo C, Marchesini S, Chapman H, He H, Howells M, Wu JS, Weierstall U, Spence JC. Phasing diffuse scattering. Application of the SIR2002 algorithm to the non-crystallographic phase problem. Acta Crystallogr A. 2004 Jul; 60(Pt 4):331-8. PMID: 15218213.
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    35. Mannella N, Rosenhahn A, Booth CH, Marchesini S, Mun BS, Yang SH, Ibrahim K, Tomioka Y, Fadley CS. Direct observation of high-temperature polaronic behavior in colossal magnetoresistive manganites. Phys Rev Lett. 2004 Apr 23; 92(16):166401. PMID: 15169249.
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    36. Marchesini S, Chapman H, Hau-Riege S, London R, Szoke A, He H, Howells M, Padmore H, Rosen R, Spence J, Weierstall U. Coherent X-ray diffractive imaging: applications and limitations. Opt Express. 2003 Sep 22; 11(19):2344-53. PMID: 19471343.
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    37. He H, Marchesini S, Howells M, Weierstall U, Hembree G, Spence JC. Experimental lensless soft-X-ray imaging using iterative algorithms: phasing diffuse scattering. Acta Crystallogr A. 2003 Mar; 59(Pt 2):143-52. PMID: 12604853.
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    38. Tegze M, Faigel G, Marchesini S. Comment on "X-ray absorption holography". Phys Rev Lett. 2002 Dec 30; 89(27):279601; author reply 279602. PMID: 12513252.
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    39. Omori S, Nihei Y, Rotenberg E, Denlinger JD, Marchesini S, Kevan SD, Tonner BP, Van Hove MA, Fadley CS. Differential photoelectron holography: a new approach for three-dimensional atomic imaging. Phys Rev Lett. 2002 Feb 04; 88(5):055504. PMID: 11863743.
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    40. Marchesini S, Fezzaa K, Belakhovsky M, Coïsson R. X-ray interferometry of surfaces with Fresnel mirrors. Appl Opt. 2000 Apr 01; 39(10):1633-6. PMID: 18345062.
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    41. Coïsson R, Marchesini S. Gauss-schell sources as models for synchrotron radiation. J Synchrotron Radiat. 1997 Sep 01; 4(Pt 5):263-6. PMID: 16699239.
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    42. Fezzaa K, Comin F, Marchesini S, Coïsson R, Belakhovsky M. X-Ray Interferometry at ESRF Using Two Coherent Beams from Fresnel Mirrors. J Xray Sci Technol. 1997 Jan 01; 7(1):12-23. PMID: 21307536.
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