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    Carbon, Seth

    TitleSoftware Developer 4
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-5078
    vCardDownload vCard

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Munoz-Torres M, Carbon S. Get GO! Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools. Methods Mol Biol. 2017; 1446:149-160. PMID: 27812941.
        View in: PubMed
      2. Mungall CJ, McMurry JA, Köhler S, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, Lewis SE, NguyenXuan J, Shefchek K, Vasilevsky N, Yuan Z, Washington N, Hochheiser H, Groza T, Smedley D, Robinson PN, Haendel MA. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 2017 Jan 04; 45(D1):D712-D722. PMID: 27899636.
        View in: PubMed
      3. McMurry JA, Köhler S, Washington NL, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, Xuan JN, Shefchek K, Vasilevsky NA, Yuan Z, Lewis SE, Hochheiser H, Groza T, Smedley D, Robinson PN, Mungall CJ, Haendel MA. Navigating the Phenotype Frontier: The Monarch Initiative. Genetics. 2016 Aug; 203(4):1491-5. PMID: 27516611.
        View in: PubMed
      4. Huntley RP, Harris MA, Alam-Faruque Y, Blake JA, Carbon S, Dietze H, Dimmer EC, Foulger RE, Hill DP, Khodiyar VK, Lock A, Lomax J, Lovering RC, Mutowo-Meullenet P, Sawford T, Van Auken K, Wood V, Mungall CJ. A method for increasing expressivity of Gene Ontology annotations using a compositional approach. BMC Bioinformatics. 2014; 15(1):155. PMID: 24885854.
        View in: PubMed
      5. Corpas M, Jimenez R, Carbon S, García A, Garcia L, Goldberg T, Gomez J, Kalderimis A, Lewis SE, Mulvany I, Pawlik A, Rowland F, Salazar G, Schreiber F, Sillitoe I, Spooner WH, Thanki AS, Villaveces JM, Yachdav G, Hermjakob H. BioJS: an open source standard for biological visualisation - its status in 2014. F1000Res. 2014; 3:55. PMID: 25075290.
        View in: PubMed
      6. Gene Ontology annotations and resources. Nucleic Acids Res. 2013 Jan; 41(Database issue):D530-5. PMID: 23161678.
        View in: PubMed
      7. Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, Micklem G. modMine: flexible access to modENCODE data. Nucleic Acids Res. 2012 Jan; 40(Database issue):D1082-8. PMID: 22080565.
        View in: PubMed
      8. Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S. AmiGO: online access to ontology and annotation data. Bioinformatics. 2009 Jan 15; 25(2):288-9. PMID: 19033274.
        View in: PubMed
      9. Gajdusek CM, Carbon S. Injury-induced release of basic fibroblast growth factor from bovine aortic endothelium. J Cell Physiol. 1989 Jun; 139(3):570-9. PMID: 2738102.
        View in: PubMed
      10. Gajdusek C, Carbon S, Ross R, Nawroth P, Stern D. Activation of coagulation releases endothelial cell mitogens. J Cell Biol. 1986 Aug; 103(2):419-28. PMID: 3733873.
        View in: PubMed
      11. Stanton TH, Carbon S. Effect of interferon on Qa-1 expression. Transplantation. 1983 Sep; 36(3):352-3. PMID: 6612767.
        View in: PubMed
      12. Stanton TH, Carbon S. Gene(s) affecting the expression of Qa-1. Immunogenetics. 1982; 16(5):435-44. PMID: 6185417.
        View in: PubMed
      13. Stanton TH, Carbon S, Maynard M. Recognition of alternate alleles and mapping of the Qa1 locus. J Immunol. 1981 Oct; 127(4):1640-3. PMID: 7276576.
        View in: PubMed

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