Loading...

Haridas, Sajeet

TitleBusiness/Systems Analyst 3
InstitutionLawrence Berkeley National Lab
DepartmentJoint Genome Institute
Address1 Cyclotron Road
Berkeley CA 94720
Phone925/296-5773
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
    List All   |   Timeline
    1. Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR. Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. Proc Natl Acad Sci U S A. 2018 Jan 09. PMID: 29317534.
      View in: PubMed
    2. Haridas S, Salamov A, Grigoriev IV. Fungal Genome Annotation. Methods Mol Biol. 2018; 1775:171-184. PMID: 29876818.
      View in: PubMed
    3. Castanera R, Pérez G, López-Varas L, Amselem J, LaButti K, Singan V, Lipzen A, Haridas S, Barry K, Grigoriev IV, Pisabarro AG, Ramírez L. Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales. BMC Genomics. 2017 Nov 16; 18(1):883. PMID: 29145801.
      View in: PubMed
    4. Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Widespread adenine N6-methylation of active genes in fungi. Nat Genet. 2017 Jun; 49(6):964-968. PMID: 28481340.
      View in: PubMed
    5. Peter M, Kohler A, Ohm RA, Kuo A, Krützmann J, Morin E, Arend M, Barry KW, Binder M, Choi C, Clum A, Copeland A, Grisel N, Haridas S, Kipfer T, LaButti K, Lindquist E, Lipzen A, Maire R, Meier B, Mihaltcheva S, Molinier V, Murat C, Pöggeler S, Quandt CA, Sperisen C, Tritt A, Tisserant E, Crous PW, Henrissat B, Nehls U, Egli S, Spatafora JW, Grigoriev IV, Martin FM. Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nat Commun. 2016 Sep 07; 7:12662. PMID: 27601008; PMCID: PMC5023957.
    6. Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW. Comparative genomics of biotechnologically important yeasts. Proc Natl Acad Sci U S A. 2016 08 30; 113(35):9882-7. PMID: 27535936.
      View in: PubMed
    7. Zeiner CA, Purvine SO, Zink EM, Paša-Tolic L, Chaput DL, Haridas S, Wu S, LaButti K, Grigoriev IV, Henrissat B, Santelli CM, Hansel CM. Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi. PLoS One. 2016; 11(7):e0157844. PMID: 27434633; PMCID: PMC4951024.
    8. David AS, Haridas S, LaButti K, Lim J, Lipzen A, Wang M, Barry K, Grigoriev IV, Spatafora JW, May G. Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass. Genome Announc. 2016 Apr 28; 4(2). PMID: 27125481; PMCID: PMC4850852.
    9. Muraguchi H, Umezawa K, Niikura M, Yoshida M, Kozaki T, Ishii K, Sakai K, Shimizu M, Nakahori K, Sakamoto Y, Choi C, Ngan CY, Lindquist E, Lipzen A, Tritt A, Haridas S, Barry K, Grigoriev IV, Pukkila PJ. Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea. PLoS One. 2015; 10(10):e0141586. PMID: 26510163; PMCID: PMC4624876.
    10. Baker SE, Schackwitz W, Lipzen A, Martin J, Haridas S, LaButti K, Grigoriev IV, Simmons BA, McCluskey K. Draft Genome Sequence of Neurospora crassa Strain FGSC 73. Genome Announc. 2015 Apr 02; 3(2). PMID: 25838471; PMCID: PMC4384475.
    11. Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS. Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. Fungal Genet Biol. 2015 Mar; 76:78-92. PMID: 25683379; PMCID: PMC4399860.
    12. Massoumi Alamouti S, Haridas S, Feau N, Robertson G, Bohlmann J, Breuil C. Comparative genomics of the pine pathogens and beetle symbionts in the genus Grosmannia. Mol Biol Evol. 2014 Jun; 31(6):1454-74. PMID: 24627033.
      View in: PubMed
    13. Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D699-704. PMID: 24297253; PMCID: PMC3965089.
    14. Haridas S, Wang Y, Lim L, Massoumi Alamouti S, Jackman S, Docking R, Robertson G, Birol I, Bohlmann J, Breuil C. The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera. BMC Genomics. 2013 Jun 02; 14:373. PMID: 23725015; PMCID: PMC3680317.
    15. Lah L, Haridas S, Bohlmann J, Breuil C. The cytochromes P450 of Grosmannia clavigera: Genome organization, phylogeny, and expression in response to pine host chemicals. Fungal Genet Biol. 2013 Jan; 50:72-81. PMID: 23111002.
      View in: PubMed
    16. Haridas S, Breuill C, Bohlmann J, Hsiang T. A biologist's guide to de novo genome assembly using next-generation sequence data: A test with fungal genomes. J Microbiol Methods. 2011 Sep; 86(3):368-75. PMID: 21749903.
      View in: PubMed
    17. DiGuistini S, Wang Y, Liao NY, Taylor G, Tanguay P, Feau N, Henrissat B, Chan SK, Hesse-Orce U, Alamouti SM, Tsui CK, Docking RT, Levasseur A, Haridas S, Robertson G, Birol I, Holt RA, Marra MA, Hamelin RC, Hirst M, Jones SJ, Bohlmann J, Breuil C. Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2504-9. PMID: 21262841; PMCID: PMC3038703.
    18. Haridas S, Gantt JS. The mitochondrial genome of the wood-degrading basidiomycete Trametes cingulata. FEMS Microbiol Lett. 2010 Jul 01; 308(1):29-34. PMID: 20455947.
      View in: PubMed
    19. Lohar DP, Haridas S, Gantt JS, VandenBosch KA. A transient decrease in reactive oxygen species in roots leads to root hair deformation in the legume-rhizobia symbiosis. New Phytol. 2007; 173(1):39-49. PMID: 17176392.
      View in: PubMed
    20. Ivashuta S, Liu J, Liu J, Lohar DP, Haridas S, Bucciarelli B, VandenBosch KA, Vance CP, Harrison MJ, Gantt JS. RNA interference identifies a calcium-dependent protein kinase involved in Medicago truncatula root development. Plant Cell. 2005 Nov; 17(11):2911-21. PMID: 16199614; PMCID: PMC1276019.
    Sajeet's Networks
    Concepts
    Derived automatically from this person's publications.
    _
    Co-Authors
    People in Profiles who have published with this person.
    _
    Related Authors
    People who share related concepts with this person.
    _

    This site is running Profiles RNS version v2.10.1-576-g789c7b32 on PROFILES-PWEB02.