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Zuckermann, Ronald

TitleMaterials Senior Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentMolecular Foundry
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/486-7091
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Edison JR, Spencer RK, Butterfoss GL, Hudson BC, Hochbaum AI, Paravastu AK, Zuckermann R, Whitelam S. Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions. Proc Natl Acad Sci U S A. 2018 May 14. PMID: 29760077.
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    2. Hudson BC, Battigelli A, Connolly MD, Edison J, Spencer RK, Whitelam S, Zuckermann R, Paravastu AK. Evidence for cis Amide Bonds in Peptoid Nanosheets. J Phys Chem Lett. 2018 May 17; 9(10):2574-2578. PMID: 29658722.
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    3. Battigelli A, Kim JH, Dehigaspitiya DC, Proulx C, Robertson EJ, Murray DJ, Rad B, Kirshenbaum K, Zuckermann R. Glycosylated Peptoid Nanosheets as a Multivalent Scaffold for Protein Recognition. ACS Nano. 2018 Mar 27; 12(3):2455-2465. PMID: 29512997.
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    4. Greer DR, Stolberg MA, Kundu J, Spencer RK, Pascal T, Prendergast D, Balsara NP, Zuckermann R. Universal Relationship between Molecular Structure and Crystal Structure in Peptoid Polymers and Prevalence of the cis Backbone Conformation. J Am Chem Soc. 2018 Jan 17; 140(2):827-833. PMID: 29309136.
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    5. Chien YC, Tao J, Saeki K, Chin AF, Lau JL, Chen CL, Zuckermann R, Marshall SJ, Marshall GW, De Yoreo JJ. Using biomimetic polymers in place of noncollagenous proteins to achieve functional remineralization of dentin tissues. ACS Biomater Sci Eng. 2017 Dec 11; 3(12):3469-3479. PMID: 29479561.
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    6. Guseva E, Zuckermann R, Dill KA. Foldamer hypothesis for the growth and sequence differentiation of prebiotic polymers. Proc Natl Acad Sci U S A. 2017 Sep 05; 114(36):E7460-E7468. PMID: 28831002.
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    7. Wang ST, Lin Y, Spencer RK, Thomas MR, Nguyen AI, Amdursky N, Pashuck ET, Skaalure SC, Song CY, Parmar PA, Morgan RM, Ercius P, Aloni S, Zuckermann R, Stevens MM. Sequence-Dependent Self-Assembly and Structural Diversity of Islet Amyloid Polypeptide-Derived ß-Sheet Fibrils. ACS Nano. 2017 Sep 26; 11(9):8579-8589. PMID: 28771324.
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    8. Gao J, Louie KB, Steinke P, Bowen BP, Raad M, Zuckermann R, Siuzdak G, Northen TR. Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry. Anal Chem. 2017 Jun 20; 89(12):6521-6526. PMID: 28520405.
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    9. Kortright JB, Sun J, Spencer RK, Jiang X, Zuckermann R. Oxygen K Edge Scattering from Bulk Comb Diblock Copolymer Reveals Extended, Ordered Backbones above Lamellar Order-Disorder Transition. J Phys Chem B. 2017 01 12; 121(1):298-305. PMID: 27960255.
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    10. Robertson EJ, Nehls EM, Zuckermann R. Structure-Rheology Relationship in Nanosheet-Forming Peptoid Monolayers. Langmuir. 2016 Nov 22; 32(46):12146-12158. PMID: 27794613.
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    11. Robertson EJ, Proulx C, Su JK, Garcia RL, Yoo S, Nehls EM, Connolly MD, Taravati L, Zuckermann R. Molecular Engineering of the Peptoid Nanosheet Hydrophobic Core. Langmuir. 2016 Nov 15; 32(45):11946-11957. PMID: 27794618.
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    12. Proulx C, Noë F, Yoo S, Connolly MD, Zuckermann R. On-resin N-terminal peptoid degradation: Toward mild sequencing conditions. Biopolymers. 2016 Sep; 106(5):726-36. PMID: 27258140.
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    13. Chen CL, Zuckermann R, DeYoreo JJ. Surface-Directed Assembly of Sequence-Defined Synthetic Polymers into Networks of Hexagonally Patterned Nanoribbons with Controlled Functionalities. ACS Nano. 2016 May 24; 10(5):5314-20. PMID: 27136277.
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    14. Sun J, Jiang X, Siegmund A, Connolly MD, Downing KH, Balsara NP, Zuckermann R. Morphology and Proton Transport in Humidified Phosphonated Peptoid Block Copolymers. Macromolecules. 2016 Apr 26; 49(8):3083-3090. PMID: 27134312.
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    15. Sun J, Jiang X, Lund R, Downing KH, Balsara NP, Zuckermann R. Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles. Proc Natl Acad Sci U S A. 2016 Apr 12; 113(15):3954-9. PMID: 27035944; PMCID: PMC4839393 [Available on 10/12/16].
    16. Flood D, Proulx C, Robertson EJ, Battigelli A, Wang S, Schwartzberg AM, Zuckermann R. Improved chemical and mechanical stability of peptoid nanosheets by photo-crosslinking the hydrophobic core. Chem Commun (Camb). 2016 Apr 04; 52(26):4753-6. PMID: 26864502.
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    17. Gao J, de Raad M, Bowen BP, Zuckermann R, Northen TR. Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry. Anal Chem. 2016 Feb 02; 88(3):1625-30. PMID: 26741735.
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    18. Robertson EJ, Battigelli A, Proulx C, Mannige RV, Haxton TK, Yun L, Whitelam S, Zuckermann R. Design, Synthesis, Assembly, and Engineering of Peptoid Nanosheets. Acc Chem Res. 2016 Mar 15; 49(3):379-89. PMID: 26741294.
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    19. Haxton TK, Zuckermann R, Whitelam S. Implicit-Solvent Coarse-Grained Simulation with a Fluctuating Interface Reveals a Molecular Mechanism for Peptoid Monolayer Buckling. J Chem Theory Comput. 2016 Jan 12; 12(1):345-52. PMID: 26647143.
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    20. Mannige RV, Haxton TK, Proulx C, Robertson EJ, Battigelli A, Butterfoss GL, Zuckermann R, Whitelam S. Peptoid nanosheets exhibit a new secondary-structure motif. Nature. 2015 Oct 15; 526(7573):415-20. PMID: 26444241.
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    21. Proulx C, Yoo S, Connolly MD, Zuckermann R. Accelerated Submonomer Solid-Phase Synthesis of Peptoids Incorporating Multiple Substituted N-Aryl Glycine Monomers. J Org Chem. 2015 Nov 06; 80(21):10490-7. PMID: 26280152.
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    22. Jun JM, Altoe MV, Aloni S, Zuckermann R. Peptoid nanosheets as soluble, two-dimensional templates for calcium carbonate mineralization. Chem Commun (Camb). 2015 Jun 25; 51(50):10218-21. PMID: 26021742.
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    23. Mojsoska B, Zuckermann R, Jenssen H. Structure-activity relationship study of novel peptoids that mimic the structure of antimicrobial peptides. Antimicrob Agents Chemother. 2015 Jul; 59(7):4112-20. PMID: 25941221; PMCID: PMC4468694.
    24. Knight AS, Zhou EY, Francis MB, Zuckermann R. Sequence Programmable Peptoid Polymers for Diverse Materials Applications. Adv Mater. 2015 Oct 14; 27(38):5665-91. PMID: 25855478.
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    25. Cai SL, Zhang WG, Zuckermann R, Li ZT, Zhao X, Liu Y. The Organic Flatland-Recent Advances in Synthetic 2D Organic Layers. Adv Mater. 2015 Oct 14; 27(38):5762-70. PMID: 25735971.
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    26. Haxton TK, Mannige RV, Zuckermann R, Whitelam S. Modeling sequence-specific polymers using anisotropic coarse-grained sites allows quantitative comparison with experiment. J Chem Theory Comput. 2015 Jan 13; 11(1):303-15. PMID: 26574228.
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    27. Sanii B, Haxton TK, Olivier GK, Cho A, Barton B, Proulx C, Whitelam S, Zuckermann R. Structure-determining step in the hierarchical assembly of peptoid nanosheets. ACS Nano. 2014 Nov 25; 8(11):11674-84. PMID: 25327498.
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    28. Sun J, Liao X, Minor AM, Balsara NP, Zuckermann R. Morphology-conductivity relationship in crystalline and amorphous sequence-defined peptoid block copolymer electrolytes. J Am Chem Soc. 2014 Oct 22; 136(42):14990-7. PMID: 25251756.
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    29. Chen CL, Qi J, Tao J, Zuckermann R, DeYoreo JJ. Tuning calcite morphology and growth acceleration by a rational design of highly stable protein-mimetics. Sci Rep. 2014 Sep 05; 4:6266. PMID: 25189418.
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    30. Robertson EJ, Oliver GK, Qian M, Proulx C, Zuckermann R, Richmond GL. Assembly and molecular order of two-dimensional peptoid nanosheets through the oil-water interface. Proc Natl Acad Sci U S A. 2014 Sep 16; 111(37):13284-9. PMID: 25197049; PMCID: PMC4169914.
    31. Konca YU, Kirshenbaum K, Zuckermann R. Nanometer-scale siRNA carriers incorporating peptidomimetic oligomers: physical characterization and biological activity. Int J Nanomedicine. 2014; 9:2271-85. PMID: 24872690; PMCID: PMC4026564.
    32. Sun J, Teran AA, Liao X, Balsara NP, Zuckermann R. Crystallization in sequence-defined peptoid diblock copolymers induced by microphase separation. J Am Chem Soc. 2014 Feb 05; 136(5):2070-7. PMID: 24422712.
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    33. Mirijanian DT, Mannige RV, Zuckermann R, Whitelam S. Development and use of an atomistic CHARMM-based forcefield for peptoid simulation. J Comput Chem. 2014 Feb 15; 35(5):360-70. PMID: 24293222.
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    34. Olivier GK, Cho A, Sanii B, Connolly MD, Tran H, Zuckermann R. Antibody-mimetic peptoid nanosheets for molecular recognition. ACS Nano. 2013 Oct 22; 7(10):9276-86. PMID: 24016337.
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    35. Sun J, Teran AA, Liao X, Balsara NP, Zuckermann R. Nanoscale phase separation in sequence-defined peptoid diblock copolymers. J Am Chem Soc. 2013 Sep 25; 135(38):14119-24. PMID: 24001200.
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    36. Chakraborty P, Zuckermann R. Coarse-grained, foldable, physical model of the polypeptide chain. Proc Natl Acad Sci U S A. 2013 Aug 13; 110(33):13368-73. PMID: 23898168; PMCID: PMC3746904.
    37. Sun J, Zuckermann R. Peptoid polymers: a highly designable bioinspired material. ACS Nano. 2013 Jun 25; 7(6):4715-32. PMID: 23721608.
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    38. Silva D, Natalello A, Sanii B, Vasita R, Saracino G, Zuckermann R, Doglia SM, Gelain F. Synthesis and characterization of designed BMHP1-derived self-assembling peptides for tissue engineering applications. Nanoscale. 2013 Jan 21; 5(2):704-18. PMID: 23223865.
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    39. Butterfoss GL, Yoo B, Jaworski JN, Chorny I, Dill KA, Zuckermann R, Bonneau R, Kirshenbaum K, Voelz VA. De novo structure prediction and experimental characterization of folded peptoid oligomers. Proc Natl Acad Sci U S A. 2012 Sep 04; 109(36):14320-5. PMID: 22908242; PMCID: PMC3437879.
    40. Tran H, Gael SL, Connolly MD, Zuckermann R. Solid-phase submonomer synthesis of peptoid polymers and their self-assembly into highly-ordered nanosheets. J Vis Exp. 2011 Nov 02; (57):e3373. PMID: 22083233; PMCID: PMC3308608.
    41. Lee BC, Zuckermann R. Protein side-chain translocation mutagenesis via incorporation of peptoid residues. ACS Chem Biol. 2011 Dec 16; 6(12):1367-74. PMID: 21958072.
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    42. Sanii B, Kudirka R, Cho A, Venkateswaran N, Olivier GK, Olson AM, Tran H, Harada RM, Tan L, Zuckermann R. Shaken, not stirred: collapsing a peptoid monolayer to produce free-floating, stable nanosheets. J Am Chem Soc. 2011 Dec 28; 133(51):20808-15. PMID: 21939206.
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    43. Yam AY, Wang X, Gao CM, Connolly MD, Zuckermann R, Bleu T, Hall J, Fedynyshyn JP, Allauzen S, Peretz D, Salisbury CM. A universal method for detection of amyloidogenic misfolded proteins. Biochemistry. 2011 May 24; 50(20):4322-9. PMID: 21539296.
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    44. Chen CL, Qi J, Zuckermann R, DeYoreo JJ. Engineered biomimetic polymers as tunable agents for controlling CaCO3 mineralization. J Am Chem Soc. 2011 Apr 13; 133(14):5214-7. PMID: 21417474.
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    45. Gelain F, Silva D, Caprini A, Taraballi F, Natalello A, Villa O, Nam KT, Zuckermann R, Doglia SM, Vescovi A. BMHP1-derived self-assembling peptides: hierarchically assembled structures with self-healing propensity and potential for tissue engineering applications. ACS Nano. 2011 Mar 22; 5(3):1845-59. PMID: 21314189.
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    46. Zuckermann R. Peptoid origins. Biopolymers. 2011; 96(5):545-55. PMID: 21184486.
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    47. Robinson DB, Buffleben GM, Langham ME, Zuckermann R. Stabilization of nanoparticles under biological assembly conditions using peptoids. Biopolymers. 2011; 96(5):669-78. PMID: 22180912.
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    48. Kudirka R, Tran H, Sanii B, Nam KT, Choi PH, Venkateswaran N, Chen R, Whitelam S, Zuckermann R. Folding of a single-chain, information-rich polypeptoid sequence into a highly ordered nanosheet. Biopolymers. 2011; 96(5):586-95. PMID: 22180906.
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    49. Gao CM, Yam AY, Wang X, Magdangal E, Salisbury C, Peretz D, Zuckermann R, Connolly MD, Hansson O, Minthon L, Zetterberg H, Blennow K, Fedynyshyn JP, Allauzen S. Aß40 oligomers identified as a potential biomarker for the diagnosis of Alzheimer's disease. PLoS One. 2010 Dec 30; 5(12):e15725. PMID: 21209907; PMCID: PMC3012719.
    50. Murnen HK, Rosales AM, Jaworski JN, Segalman RA, Zuckermann R. Hierarchical self-assembly of a biomimetic diblock copolypeptoid into homochiral superhelices. J Am Chem Soc. 2010 Nov 17; 132(45):16112-9. PMID: 20964429.
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    51. Nam KT, Shelby SA, Choi PH, Marciel AB, Chen R, Tan L, Chu TK, Mesch RA, Lee BC, Connolly MD, Kisielowski C, Zuckermann R. Free-floating ultrathin two-dimensional crystals from sequence-specific peptoid polymers. Nat Mater. 2010 May; 9(5):454-60. PMID: 20383129.
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    52. Ding B, Deng Z, Yan H, Cabrini S, Zuckermann R, Bokor J. Gold nanoparticle self-similar chain structure organized by DNA origami. J Am Chem Soc. 2010 Mar 17; 132(10):3248-9. PMID: 20163139.
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    53. Seo J, Barron AE, Zuckermann R. Novel peptoid building blocks: synthesis of functionalized aromatic helix-inducing submonomers. Org Lett. 2010 Feb 05; 12(3):492-5. PMID: 20055478; PMCID: PMC2814525.
    54. Lee BC, Zuckermann R. Templated display of biomolecules and inorganic nanoparticles by metal ion-induced peptide nanofibers. Chem Commun (Camb). 2010 Mar 14; 46(10):1634-6. PMID: 20177599.
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    55. Zuckermann R, Kodadek T. Peptoids as potential therapeutics. Curr Opin Mol Ther. 2009 Jun; 11(3):299-307. PMID: 19479663.
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    56. Thakkar A, Cohen AS, Connolly MD, Zuckermann R, Pei D. High-throughput sequencing of peptoids and peptide-peptoid hybrids by partial edman degradation and mass spectrometry. J Comb Chem. 2009 Mar 09; 11(2):294-302. PMID: 19154119; PMCID: PMC2765567.
    57. Dohm MT, Seurynck-Servoss SL, Seo J, Zuckermann R, Barron AE. Close mimicry of lung surfactant protein B by "clicked" dimers of helical, cationic peptoids. Biopolymers. 2009; 92(6):538-53. PMID: 19777571; PMCID: PMC2860423.
    58. Lee BC, Chu TK, Dill KA, Zuckermann R. Biomimetic nanostructures: creating a high-affinity zinc-binding site in a folded nonbiological polymer. J Am Chem Soc. 2008 Jul 09; 130(27):8847-55. PMID: 18597438; PMCID: PMC2748234.
    59. Ross TM, Zuckermann R, Reinhard C, Frey WH. Intranasal administration delivers peptoids to the rat central nervous system. Neurosci Lett. 2008 Jul 04; 439(1):30-3. PMID: 18501511.
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    60. Ballister ER, Lai AH, Zuckermann R, Cheng Y, Mougous JD. In vitro self-assembly of tailorable nanotubes from a simple protein building block. Proc Natl Acad Sci U S A. 2008 Mar 11; 105(10):3733-8. PMID: 18310321; PMCID: PMC2268831.
    61. Chongsiriwatana NP, Patch JA, Czyzewski AM, Dohm MT, Ivankin A, Gidalevitz D, Zuckermann R, Barron AE. Peptoids that mimic the structure, function, and mechanism of helical antimicrobial peptides. Proc Natl Acad Sci U S A. 2008 Feb 26; 105(8):2794-9. PMID: 18287037; PMCID: PMC2268539.
    62. Utku Y, Dehan E, Ouerfelli O, Piano F, Zuckermann R, Pagano M, Kirshenbaum K. A peptidomimetic siRNA transfection reagent for highly effective gene silencing. Mol Biosyst. 2006 Jun; 2(6-7):312-7. PMID: 16880950.
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    63. Paulick MG, Hart KM, Brinner KM, Tjandra M, Charych DH, Zuckermann R. Cleavable hydrophilic linker for one-bead-one-compound sequencing of oligomer libraries by tandem mass spectrometry. J Comb Chem. 2006 May-Jun; 8(3):417-26. PMID: 16677012.
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    64. Huang K, Wu CW, Sanborn TJ, Patch JA, Kirshenbaum K, Zuckermann R, Barron AE, Radhakrishnan I. A threaded loop conformation adopted by a family of peptoid nonamers. J Am Chem Soc. 2006 Feb 08; 128(5):1733-8. PMID: 16448149; PMCID: PMC2527689.
    65. Lee BC, Zuckermann R, Dill KA. Folding a nonbiological polymer into a compact multihelical structure. J Am Chem Soc. 2005 Aug 10; 127(31):10999-1009. PMID: 16076207.
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    66. Horn T, Lee BC, Dill KA, Zuckermann R. Incorporation of chemoselective functionalities into peptoids via solid-phase submonomer synthesis. Bioconjug Chem. 2004 Mar-Apr; 15(2):428-35. PMID: 15025542.
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    67. Wu CW, Kirshenbaum K, Sanborn TJ, Patch JA, Huang K, Dill KA, Zuckermann R, Barron AE. Structural and spectroscopic studies of peptoid oligomers with alpha-chiral aliphatic side chains. J Am Chem Soc. 2003 Nov 05; 125(44):13525-30. PMID: 14583049.
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    68. Lobo BA, Vetro JA, Suich DM, Zuckermann R, Middaugh CR. Structure/function analysis of peptoid/lipitoid:DNA complexes. J Pharm Sci. 2003 Sep; 92(9):1905-18. PMID: 12950008.
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    69. Burkoth TS, Fafarman AT, Charych DH, Connolly MD, Zuckermann R. Incorporation of unprotected heterocyclic side chains into peptoid oligomers via solid-phase submonomer synthesis. J Am Chem Soc. 2003 Jul 23; 125(29):8841-5. PMID: 12862480.
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    70. Burkoth TS, Beausoleil E, Kaur S, Tang D, Cohen FE, Zuckermann R. Toward the synthesis of artificial proteins: the discovery of an amphiphilic helical peptoid assembly. Chem Biol. 2002 May; 9(5):647-54. PMID: 12031671.
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    71. Sanborn TJ, Wu CW, Zuckermann R, Barron AE. Extreme stability of helices formed by water-soluble poly-N-substituted glycines (polypeptoids) with alpha-chiral side chains. Biopolymers. 2002 Jan; 63(1):12-20. PMID: 11754344.
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