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Geissler, Phillip

TitleBiologist Faculty Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentChemical Sciences
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/642-8716
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Rotskoff GM, Geissler P. Robust nonequilibrium pathways to microcompartment assembly. Proc Natl Acad Sci U S A. 2018 Jun 04. PMID: 29866851.
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    2. Delor M, Dai J, Roberts TD, Rogers JR, Hamed SM, Neaton JB, Geissler P, Francis MB, Ginsberg NS. Exploiting Chromophore-Protein Interactions through Linker Engineering To Tune Photoinduced Dynamics in a Biomimetic Light-Harvesting Platform. J Am Chem Soc. 2018 May 09. PMID: 29741876.
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    3. Forth J, Liu X, Hasnain J, Toor A, Miszta K, Shi S, Geissler P, Emrick T, Helms BA, Russell TP. Reconfigurable Printed Liquids. Adv Mater. 2018 Apr; 30(16):e1707603. PMID: 29573293.
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    4. Klymko K, Geissler P, Garrahan JP, Whitelam S. Rare behavior of growth processes via umbrella sampling of trajectories. Phys Rev E. 2018 Mar; 97(3-1):032123. PMID: 29776178.
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    5. DuBay KH, Iwan K, Osorio-Planes L, Geissler P, Groll M, Trauner D, Broichhagen J. A Predictive Approach for the Optical Control of Carbonic Anhydrase II Activity. ACS Chem Biol. 2018 Mar 16; 13(3):793-800. PMID: 29357237.
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    6. McCaffrey DL, Nguyen SC, Cox SJ, Weller H, Alivisatos AP, Geissler P, Saykally RJ. Mechanism of ion adsorption to aqueous interfaces: Graphene/water vs. air/water. Proc Natl Acad Sci U S A. 2017 Dec 19; 114(51):13369-13373. PMID: 28827359.
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    7. Garrahan JP, Geissler P, Limmer DT. Virtual Issue in Memory of David Chandler. J Phys Chem B. 2017 06 01; 121(21):5309-5311. PMID: 28565909.
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    8. Schwierz N, Frost CV, Geissler P, Zacharias M. From Aß Filament to Fibril: Molecular Mechanism of Surface-Activated Secondary Nucleation from All-Atom MD Simulations. J Phys Chem B. 2017 02 02; 121(4):671-682. PMID: 27992231.
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    9. Ye X, Jones MR, Frechette LB, Chen Q, Powers AS, Ercius P, Dunn G, Rotskoff GM, Nguyen SC, Adiga VP, Zettl A, Rabani E, Geissler P, Alivisatos AP. Single-particle mapping of nonequilibrium nanocrystal transformations. Science. 2016 11 18; 354(6314):874-877. PMID: 27856905.
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    10. Gingrich TR, Rotskoff GM, Crooks GE, Geissler P. Near-optimal protocols in complex nonequilibrium transformations. Proc Natl Acad Sci U S A. 2016 09 13; 113(37):10263-8. PMID: 27573816; PMCID: PMC5027427 [Available on 03/13/17].
    11. Klymko K, Geissler P, Whitelam S. Microscopic origin and macroscopic implications of lane formation in mixtures of oppositely driven particles. Phys Rev E. 2016 Aug; 94(2-1):022608. PMID: 27627361.
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    12. Weichsel J, Geissler P. The More the Tubular: Dynamic Bundling of Actin Filaments for Membrane Tube Formation. PLoS Comput Biol. 2016 Jul; 12(7):e1004982. PMID: 27384915; PMCID: PMC4934920.
    13. Vaikuntanathan S, Rotskoff G, Hudson A, Geissler P. Necessity of capillary modes in a minimal model of nanoscale hydrophobic solvation. Proc Natl Acad Sci U S A. 2016 Apr 19; 113(16):E2224-30. PMID: 26957607; PMCID: PMC4843481 [Available on 10/19/16].
    14. Schmid EM, Bakalar MH, Choudhuri K, Weichsel J, Ann H, Geissler P, Dustin ML, Fletcher DA. Size-dependent protein segregation at membrane interfaces. Nat Phys. 2016 Jul; 12(7):704-711. PMID: 27980602.
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    15. Widmer-Cooper A, Geissler P. Ligand-Mediated Interactions between Nanoscale Surfaces Depend Sensitively and Nonlinearly on Temperature, Facet Dimensions, and Ligand Coverage. ACS Nano. 2016 Feb 23; 10(2):1877-87. PMID: 26756464.
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    16. Schwierz N, Frost CV, Geissler P, Zacharias M. Dynamics of Seeded Aß40-Fibril Growth from Atomistic Molecular Dynamics Simulations: Kinetic Trapping and Reduced Water Mobility in the Locking Step. J Am Chem Soc. 2016 Jan 20; 138(2):527-39. PMID: 26694883.
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    17. Grünwald M, Tricard S, Whitesides GM, Geissler P. Exploiting non-equilibrium phase separation for self-assembly. Soft Matter. 2016 Feb 07; 12(5):1517-24. PMID: 26658789.
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    18. Gingrich TR, Geissler P. Preserving correlations between trajectories for efficient path sampling. J Chem Phys. 2015 Jun 21; 142(23):234104. PMID: 26093547.
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    19. Noriega R, Finley DT, Haberstroh J, Geissler P, Francis MB, Ginsberg NS. Manipulating Excited-State Dynamics of Individual Light-Harvesting Chromophores through Restricted Motions in a Hydrated Nanoscale Protein Cavity. J Phys Chem B. 2015 Jun 11; 119(23):6963-73. PMID: 26035585.
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    20. DuBay KH, Bowman GR, Geissler P. Fluctuations within folded proteins: implications for thermodynamic and allosteric regulation. Acc Chem Res. 2015 Apr 21; 48(4):1098-105. PMID: 25688669.
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    21. Hohlfeld E, Geissler P. Communication: Dominance of extreme statistics in a prototype many-body Brownian ratchet. J Chem Phys. 2014 Oct 28; 141(16):161101. PMID: 25362262.
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    22. Gingrich TR, Vaikuntanathan S, Geissler P. Heterogeneity-induced large deviations in activity and (in some cases) entropy production. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Oct; 90(4):042123. PMID: 25375454.
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    23. Onoa B, Schneider AR, Brooks MD, Grob P, Nogales E, Geissler P, Niyogi KK, Bustamante C. Atomic force microscopy of photosystem II and its unit cell clustering quantitatively delineate the mesoscale variability in Arabidopsis thylakoids. PLoS One. 2014; 9(7):e101470. PMID: 25007326; PMCID: PMC4090009.
    24. Vaikuntanathan S, Gingrich TR, Geissler P. Dynamic phase transitions in simple driven kinetic networks. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun; 89(6):062108. PMID: 25019726.
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    25. Grünwald M, Geissler P. Patterns without patches: hierarchical self-assembly of complex structures from simple building blocks. ACS Nano. 2014 Jun 24; 8(6):5891-7. PMID: 24816138; PMCID: PMC4071109.
    26. Bowman GR, Geissler P. Extensive conformational heterogeneity within protein cores. J Phys Chem B. 2014 Jun 19; 118(24):6417-23. PMID: 24564338; PMCID: PMC4065209.
    27. Mey AS, Geissler P, Garrahan JP. Rare-event trajectory ensemble analysis reveals metastable dynamical phases in lattice proteins. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Mar; 89(3):032109. PMID: 24730792.
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    28. Schneider AR, Geissler P. Coarse-grained computer simulation of dynamics in thylakoid membranes: methods and opportunities. Front Plant Sci. 2013; 4:555. PMID: 24478781; PMCID: PMC3896813.
    29. Vaikuntanathan S, Geissler P. Putting water on a lattice: the importance of long wavelength density fluctuations in theories of hydrophobic and interfacial phenomena. Phys Rev Lett. 2014 Jan 17; 112(2):020603. PMID: 24483999.
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    30. Widmer-Cooper A, Geissler P. Orientational ordering of passivating ligands on CdS nanorods in solution generates strong rod-rod interactions. Nano Lett. 2014 Jan 08; 14(1):57-65. PMID: 24295449.
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    31. Schneider AR, Geissler P. Coexistence of fluid and crystalline phases of proteins in photosynthetic membranes. Biophys J. 2013 Sep 03; 105(5):1161-70. PMID: 24010659; PMCID: PMC3762348.
    32. Geissler P. Water interfaces, solvation, and spectroscopy. Annu Rev Phys Chem. 2013; 64:317-37. PMID: 23298244.
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    33. Vaikuntanathan S, Shaffer PR, Geissler P. Adsorption of solutes at liquid-vapor interfaces: insights from lattice gas models. Faraday Discuss. 2013; 160:63-74; discussion 103-20. PMID: 23795493.
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    34. Stachowiak JC, Schmid EM, Ryan CJ, Ann HS, Sasaki DY, Sherman MB, Geissler P, Fletcher DA, Hayden CC. Membrane bending by protein-protein crowding. Nat Cell Biol. 2012 Sep; 14(9):944-9. PMID: 22902598.
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    35. Grünwald M, Lutker K, Alivisatos AP, Rabani E, Geissler P. Metastability in pressure-induced structural transformations of CdSe/ZnS core/shell nanocrystals. Nano Lett. 2013 Apr 10; 13(4):1367-72. PMID: 22800435.
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    36. Bowman GR, Geissler P. Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites. Proc Natl Acad Sci U S A. 2012 Jul 17; 109(29):11681-6. PMID: 22753506; PMCID: PMC3406870.
    37. Grünwald M, Zayak A, Neaton JB, Geissler P, Rabani E. Transferable pair potentials for CdS and ZnS crystals. J Chem Phys. 2012 Jun 21; 136(23):234111. PMID: 22779585.
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    38. Chandler D, Dellago C, Geissler P. Ion dynamics: Wired-up water. Nat Chem. 2012 Mar 22; 4(4):245-7. PMID: 22437703.
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    39. Park J, Zheng H, Lee WC, Geissler P, Rabani E, Alivisatos AP. Direct observation of nanoparticle superlattice formation by using liquid cell transmission electron microscopy. ACS Nano. 2012 Mar 27; 6(3):2078-85. PMID: 22360715.
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    40. Crow A, Webster KD, Hohlfeld E, Ng WP, Geissler P, Fletcher DA. Contractile equilibration of single cells to step changes in extracellular stiffness. Biophys J. 2012 Feb 08; 102(3):443-51. PMID: 22325266; PMCID: PMC3274802.
    41. Risca VI, Wang EB, Chaudhuri O, Chia JJ, Geissler P, Fletcher DA. Actin filament curvature biases branching direction. Proc Natl Acad Sci U S A. 2012 Feb 21; 109(8):2913-8. PMID: 22308368; PMCID: PMC3286980.
    42. Sivak DA, Geissler P. Consequences of local inter-strand dehybridization for large-amplitude bending fluctuations of double-stranded DNA. J Chem Phys. 2012 Jan 28; 136(4):045102. PMID: 22299918.
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    43. Otten DE, Shaffer PR, Geissler P, Saykally RJ. Elucidating the mechanism of selective ion adsorption to the liquid water surface. Proc Natl Acad Sci U S A. 2012 Jan 17; 109(3):701-5. PMID: 22233805; PMCID: PMC3271925.
    44. Henzie J, Grünwald M, Widmer-Cooper A, Geissler P, Yang P. Self-assembly of uniform polyhedral silver nanocrystals into densest packings and exotic superlattices. Nat Mater. 2011 Nov 20; 11(2):131-7. PMID: 22101811.
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    45. Dubay KH, Bothma JP, Geissler P. Long-range intra-protein communication can be transmitted by correlated side-chain fluctuations alone. PLoS Comput Biol. 2011 Sep; 7(9):e1002168. PMID: 21980271; PMCID: PMC3182858.
    46. Ku J, Aruguete DM, Alivisatos AP, Geissler P. Self-assembly of magnetic nanoparticles in evaporating solution. J Am Chem Soc. 2011 Feb 02; 133(4):838-48. PMID: 21158454.
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    47. Browne W, Geissler P. The susceptibility of a-helical secondary structure to steric strain: Coarse-grained simulation of dendronized polypeptides. J Chem Phys. 2010 Oct 14; 133(14):145102. PMID: 20950049.
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    48. Whitelam S, Geissler P, Pronk S. Microscopic implications of S-DNA. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Aug; 82(2 Pt 1):021907. PMID: 20866837.
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    49. Miller RA, Stephanopoulos N, McFarland JM, Rosko AS, Geissler P, Francis MB. Impact of assembly state on the defect tolerance of TMV-based light harvesting arrays. J Am Chem Soc. 2010 May 05; 132(17):6068-74. PMID: 20392093.
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    50. Pasqua A, Maibaum L, Oster G, Fletcher DA, Geissler P. Large-scale simulations of fluctuating biological membranes. J Chem Phys. 2010 Apr 21; 132(15):154107. PMID: 20423168; PMCID: PMC3188600.
    51. Baker JL, Widmer-Cooper A, Toney MF, Geissler P, Alivisatos AP. Device-scale perpendicular alignment of colloidal nanorods. Nano Lett. 2010 Jan; 10(1):195-201. PMID: 19961233.
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    52. Mastroianni AJ, Sivak DA, Geissler P, Alivisatos AP. Probing the conformational distributions of subpersistence length DNA. Biophys J. 2009 Sep 02; 97(5):1408-17. PMID: 19720029; PMCID: PMC2749763.
    53. Noah-Vanhoucke J, Geissler P. On the fluctuations that drive small ions toward, and away from, interfaces between polar liquids and their vapors. Proc Natl Acad Sci U S A. 2009 Sep 08; 106(36):15125-30. PMID: 19720991; PMCID: PMC2741216.
    54. Gin BC, Garrahan JP, Geissler P. The limited role of nonnative contacts in the folding pathways of a lattice protein. J Mol Biol. 2009 Oct 09; 392(5):1303-14. PMID: 19576901.
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    55. DuBay KH, Geissler P. Calculation of proteins' total side-chain torsional entropy and its influence on protein-ligand interactions. J Mol Biol. 2009 Aug 14; 391(2):484-97. PMID: 19481551.
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    56. Pronk S, Geissler P. Faster strain fluctuation methods through partial volume updates. J Chem Phys. 2009 May 21; 130(19):194706. PMID: 19466854; PMCID: PMC2832050.
    57. Noah-Vanhoucke J, Smith JD, Geissler P. Toward a simple molecular understanding of sum frequency generation at air-water interfaces. J Phys Chem B. 2009 Apr 02; 113(13):4065-74. PMID: 19278256.
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    58. Whitelam S, Rogers C, Pasqua A, Paavola C, Trent J, Geissler P. The impact of conformational fluctuations on self-assembly: cooperative aggregation of archaeal chaperonin proteins. Nano Lett. 2009 Jan; 9(1):292-7. PMID: 19072304; PMCID: PMC2670443.
    59. Fletcher DA, Geissler P. Active biological materials. Annu Rev Phys Chem. 2009; 60:469-86. PMID: 18999991; PMCID: PMC3236678.
    60. Whitelam S, Pronk S, Geissler P. Stretching chimeric DNA: a test for the putative S-form. J Chem Phys. 2008 Nov 28; 129(20):205101. PMID: 19045879.
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    61. Grünwald M, Dellago C, Geissler P. Precision shooting: Sampling long transition pathways. J Chem Phys. 2008 Nov 21; 129(19):194101. PMID: 19026039.
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    62. Whitelam S, Feng EH, Hagan MF, Geissler P. The role of collective motion in examples of coarsening and self-assembly. Soft Matter. 2009 Mar 21; 5(6):1251-1262. PMID: 23227104.
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    63. Liu AP, Richmond DL, Maibaum L, Pronk S, Geissler P, Fletcher DA. Membrane-induced bundling of actin filaments. Nat Phys. 2008 Aug 31; 4:789-793. PMID: 19746192.
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    64. Pronk S, Geissler P, Fletcher DA. Limits of filopodium stability. Phys Rev Lett. 2008 Jun 27; 100(25):258102. PMID: 18643706; PMCID: PMC2494850.
    65. Shroff H, Sivak D, Siegel JJ, McEvoy AL, Siu M, Spakowitz A, Geissler P, Liphardt J. Optical measurement of mechanical forces inside short DNA loops. Biophys J. 2008 Mar 15; 94(6):2179-86. PMID: 18065484; PMCID: PMC2257878.
    66. Whitelam S, Pronk S, Geissler P. There and (slowly) back again: entropy-driven hysteresis in a model of DNA overstretching. Biophys J. 2008 Apr 01; 94(7):2452-69. PMID: 17981894; PMCID: PMC2267113.
    67. Smith JD, Saykally RJ, Geissler P. The effects of dissolved halide anions on hydrogen bonding in liquid water. J Am Chem Soc. 2007 Nov 14; 129(45):13847-56. PMID: 17958418.
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    68. Grünwald M, Dellago C, Geissler P. An efficient transition path sampling algorithm for nanoparticles under pressure. J Chem Phys. 2007 Oct 21; 127(15):154718. PMID: 17949202.
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    69. Whitelam S, Geissler P. Avoiding unphysical kinetic traps in Monte Carlo simulations of strongly attractive particles. J Chem Phys. 2007 Oct 21; 127(15):154101. PMID: 17949126.
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    70. Trepagnier EH, Radenovic A, Sivak D, Geissler P, Liphardt J. Controlling DNA capture and propagation through artificial nanopores. Nano Lett. 2007 Sep; 7(9):2824-30. PMID: 17705552.
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    71. Lechner W, Oberhofer H, Dellago C, Geissler P. Equilibrium free energies from fast-switching trajectories with large time steps. J Chem Phys. 2006 Jan 28; 124(4):044113. PMID: 16460155.
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    72. Whitelam S, Geissler P. Two-stage coarsening mechanism in a kinetically constrained model of an attractive colloid. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan; 73(1 Pt 2):016115. PMID: 16486224.
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    73. Eaves JD, Tokmakoff A, Geissler P. Electric field fluctuations drive vibrational dephasing in water. J Phys Chem A. 2005 Oct 27; 109(42):9424-36. PMID: 16866391.
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    74. Geissler P. Temperature dependence of inhomogeneous broadening: on the meaning of isosbestic points. J Am Chem Soc. 2005 Oct 26; 127(42):14930-5. PMID: 16231949.
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    75. Smith JD, Cappa CD, Wilson KR, Cohen RC, Geissler P, Saykally RJ. Unified description of temperature-dependent hydrogen-bond rearrangements in liquid water. Proc Natl Acad Sci U S A. 2005 Oct 04; 102(40):14171-4. PMID: 16179387; PMCID: PMC1242322.
    76. Reichman DR, Rabani E, Geissler P. Comparison of dynamical heterogeneity in hard-sphere and attractive glass formers. J Phys Chem B. 2005 Aug 04; 109(30):14654-8. PMID: 16852849.
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    77. Oberhofer H, Dellago C, Geissler P. Biased sampling of nonequilibrium trajectories: can fast switching simulations outperform conventional free energy calculation methods? J Phys Chem B. 2005 Apr 14; 109(14):6902-15. PMID: 16851777.
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    78. Geissler P, Reichman DR. Short-ranged attractions in jammed liquids: how cooling can melt a glass. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Mar; 71(3 Pt 1):031206. PMID: 15903419.
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    79. Geissler P, Shakhnovich EI, Grosberg AY. Solvation versus freezing in a heteropolymer globule. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug; 70(2 Pt 1):021802. PMID: 15447508.
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    80. Geissler P, Reichman DR. Nature of slow dynamics in a minimal model of frustration-limited domains. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Feb; 69(2 Pt 1):021501. PMID: 14995443.
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    81. Rabani E, Reichman DR, Geissler P, Brus LE. Drying-mediated self-assembly of nanoparticles. Nature. 2003 Nov 20; 426(6964):271-4. PMID: 14628047.
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    82. Dellago C, Geissler P, Chandler D, Hutter J, Parrinello M. Comment on "Dissociation of water under pressure". Phys Rev Lett. 2002 Nov 04; 89(19):199601; author reply 199602. PMID: 12443160.
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    83. Geissler P, Shakhnovich EI. Reversible stretching of random heteropolymers. Phys Rev E Stat Nonlin Soft Matter Phys. 2002 May; 65(5 Pt 2):056110. PMID: 12059650.
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    84. Bolhuis PG, Chandler D, Dellago C, Geissler P. Transition path sampling: throwing ropes over rough mountain passes, in the dark. Annu Rev Phys Chem. 2002; 53:291-318. PMID: 11972010.
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