Shih, Patrick

TitleBiologist Postdoc Fellow
InstitutionLawrence Berkeley National Lab
DepartmentEnviron Genomics & Systems Bio
Address1 Cyclotron Road
Berkeley CA 94720
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Shih P. Towards a sustainable bio-based economy: Redirecting primary metabolism to new products with plant synthetic biology. Plant Sci. 2018 Aug; 273:84-91. PMID: 29907312.
      View in: PubMed
    2. Ward LM, Hemp J, Shih P, McGlynn SE, Fischer WW. Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer. Front Microbiol. 2018; 9:260. PMID: 29515543.
      View in: PubMed
    3. Aznar A, Chalvin C, Shih P, Maimann M, Ebert B, Birdseye DS, Loqué D, Scheller HV. Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass. Biotechnol Biofuels. 2018; 11:2. PMID: 29321811.
      View in: PubMed
    4. Shih P, Ward LM, Fischer WW. Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi. Proc Natl Acad Sci U S A. 2017 Oct 03; 114(40):10749-10754. PMID: 28923961.
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    5. Shih P, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D. A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nat Commun. 2016 Oct 26; 7:13215. PMID: 27782150.
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    6. Shih P, Liang Y, Loqué D. Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops. Plant J. 2016 07; 87(1):103-17. PMID: 27030440.
      View in: PubMed
    7. Shih P, Occhialini A, Cameron JC, Andralojc PJ, Parry MA, Kerfeld CA. Biochemical characterization of predicted Precambrian RuBisCO. Nat Commun. 2016 Jan 21; 7:10382. PMID: 26790750; PMCID: PMC4735906.
    8. Shih P. Photosynthesis and early Earth. Curr Biol. 2015 Oct 05; 25(19):R855-9. PMID: 26439346.
      View in: PubMed
    9. Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, Ajioka J, Baulcombe DC, Zipfel C, Kamoun S, Jones JD, Kuhn H, Robatzek S, Van Esse HP, Sanders D, Oldroyd G, Martin C, Field R, O'Connor S, Fox S, Wulff B, Miller B, Breakspear A, Radhakrishnan G, Delaux PM, Loqué D, Granell A, Tissier A, Shih P, Brutnell TP, Quick WP, Rischer H, Fraser PD, Aharoni A, Raines C, South PF, Ané JM, Hamberger BR, Langdale J, Stougaard J, Bouwmeester H, Udvardi M, Murray JA, Ntoukakis V, Schäfer P, Denby K, Edwards KJ, Osbourn A, Haseloff J. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytol. 2015 Oct; 208(1):13-9. PMID: 26171760.
      View in: PubMed
    10. Shih P. Cyanobacterial evolution: fresh insight into ancient questions. Curr Biol. 2015 Mar 02; 25(5):R192-3. PMID: 25734266.
      View in: PubMed
    11. Shih P, Zarzycki J, Niyogi KK, Kerfeld CA. Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium. J Biol Chem. 2014 Apr 04; 289(14):9493-500. PMID: 24558040; PMCID: PMC3975000.
    12. Matzke NJ, Shih P, Kerfeld CA. Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer. PLoS One. 2014; 9(1):e85103. PMID: 24465485.
      View in: PubMed
    13. Shih P, Matzke NJ. Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins. Proc Natl Acad Sci U S A. 2013 Jul 23; 110(30):12355-60. PMID: 23776247; PMCID: PMC3725117.
    14. Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih P, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J. 2013 Nov; 7(11):2178-91. PMID: 23739051; PMCID: PMC3806265.
    15. Shih P, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, Nolan M, Davenport KW, Han CS, Rubin EM, Eisen JA, Woyke T, Gugger M, Kerfeld CA. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc Natl Acad Sci U S A. 2013 Jan 15; 110(3):1053-8. PMID: 23277585; PMCID: PMC3549136.
    16. Chábera P, Durchan M, Shih P, Kerfeld CA, Polívka T. Excited-state properties of the 16kDa red carotenoid protein from Arthrospira maxima. Biochim Biophys Acta. 2011 Jan; 1807(1):30-5. PMID: 20813093.
      View in: PubMed
    17. Jung HS, Okegawa Y, Shih P, Kellogg E, Abdel-Ghany SE, Pilon M, Sjölander K, Shikanai T, Niyogi KK. Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport. PLoS One. 2010 Jul 21; 5(7):e11688. PMID: 20657737; PMCID: PMC2908147.

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