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    Ronald, Pamela

    TitleBiologist Faculty Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/495-2459
    vCardDownload vCard

      Collapse Bibliographic 
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Li G, Jain R, Chern M, Pham NT, Martin JA, Wei T, Schackwitz WS, Lipzen AM, Duong PQ, Jones KC, Jiang L, Ruan D, Bauer D, Peng Y, Barry KW, Schmutz J, Ronald P. The Sequences of 1,504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies. Plant Cell. 2017 Jun 02. PMID: 28576844.
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      2. Park CJ, Wei T, Sharma R, Ronald P. Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae. Rice (N Y). 2017 Dec; 10(1):27. PMID: 28577284.
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      3. Pruitt RN, Joe A, Zhang W, Feng W, Stewart V, Schwessinger B, Dinneny JR, Ronald P. A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone. New Phytol. 2017 May 30. PMID: 28556915.
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      4. Caddell DF, Park CJ, Thomas NC, Canlas PE, Ronald P. Silencing of the Rice Gene LRR1 Compromises Rice Xa21 Transcript Accumulation and XA21-Mediated Immunity. Rice (N Y). 2017 Dec; 10(1):23. PMID: 28534133.
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      5. Wei T, Chen TC, Ho YT, Ronald P. Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae. PeerJ. 2016; 4:e2507. PMID: 27761320.
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      6. Thomas NC, Schwessinger B, Liu F, Chen H, Wei T, Nguyen YP, Shaker IW, Ronald P. XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves. PeerJ. 2016; 4:e2446. PMID: 27703843.
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      7. Chandran AK, Yoo YH, Cao P, Sharma R, Sharma M, Dardick C, Ronald P, Jung KH. Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes. Rice (N Y). 2016 Dec; 9(1):40. PMID: 27540739.
        View in: PubMed
      8. Lin F, Manisseri C, Fagerström A, Peck ML, Vega-Sánchez ME, Williams B, Chiniquy DM, Saha P, Pattathil S, Conlin B, Zhu L, Hahn MG, Willats WG, Scheller HV, Ronald P, Bartley LE. Cell Wall Composition and Candidate Biosynthesis Gene Expression During Rice Development. Plant Cell Physiol. 2016 Oct; 57(10):2058-2075. PMID: 27481893.
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      9. Chern M, Xu Q, Bart RS, Bai W, Ruan D, Sze-To WH, Canlas PE, Jain R, Chen X, Ronald P. Correction: A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet. 2016 Jul; 12(7):e1006182. PMID: 27385201.
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      10. Chern M, Xu Q, Bart RS, Bai W, Ruan D, Sze-To WH, Canlas PE, Jain R, Chen X, Ronald P. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet. 2016 May; 12(5):e1006049. PMID: 27176732.
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      11. Dong W, Thomas N, Ronald P, Goyer A. Overexpression of Thiamin Biosynthesis Genes in Rice Increases Leaf and Unpolished Grain Thiamin Content But Not Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci. 2016; 7:616. PMID: 27242822.
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      12. Wei T, Chern M, Liu F, Ronald P. Suppression of bacterial infection in rice by treatment with a sulfated peptide. Mol Plant Pathol. 2016 Dec; 17(9):1493-1498. PMID: 26765864.
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      13. Bahar O, Mordukhovich G, Luu DD, Schwessinger B, Daudi A, Jehle AK, Felix G, Ronald P. Bacterial Outer Membrane Vesicles Induce Plant Immune Responses. Mol Plant Microbe Interact. 2016 May; 29(5):374-84. PMID: 26926999.
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      14. Zhou X, Wang J, Peng C, Zhu X, Yin J, Li W, He M, Wang J, Chern M, Yuan C, Wu W, Ma W, Qin P, Ma B, Wu X, Li S, Ronald P, Chen X. Four receptor-like cytoplasmic kinases regulate development and immunity in rice. Plant Cell Environ. 2016 Jun; 39(6):1381-92. PMID: 26679011.
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      15. Harkenrider M, Sharma R, De Vleesschauwer D, Tsao L, Zhang X, Chern M, Canlas P, Zuo S, Ronald P. Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens. PLoS One. 2016; 11(1):e0147310. PMID: 26795719.
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      16. Schwessinger B, Li X, Ellinghaus TL, Chan LJ, Wei T, Joe A, Thomas N, Pruitt R, Adams PD, Chern MS, Petzold CJ, Liu CC, Ronald P. A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection. Integr Biol (Camb). 2016 Apr 18; 8(4):542-5. PMID: 26611838.
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      17. Sun L, Singh S, Joo M, Vega-Sanchez M, Ronald P, Simmons BA, Adams P, Auer M. Non-invasive imaging of cellulose microfibril orientation within plant cell walls by polarized Raman microspectroscopy. Biotechnol Bioeng. 2016 Jan; 113(1):82-90. PMID: 26137889.
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      18. Smith-Moritz AM, Hao Z, Fernández-Niño SG, Fangel JU, Verhertbruggen Y, Holman HY, Willats WG, Ronald P, Scheller HV, Heazlewood JL, Vega-Sánchez ME. Structural characterization of a mixed-linkage glucan deficient mutant reveals alteration in cellulose microfibril orientation in rice coleoptile mesophyll cell walls. Front Plant Sci. 2015; 6:628. PMID: 26347754.
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      19. Jung KH, Cao P, Sharma R, Jain R, Ronald P. Phylogenomics databases for facilitating functional genomics in rice. Rice (N Y). 2015 Dec; 8(1):60. PMID: 26223238.
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      20. Pruitt RN, Schwessinger B, Joe A, Thomas N, Liu F, Albert M, Robinson MR, Chan LJ, Luu DD, Chen H, Bahar O, Daudi A, De Vleesschauwer D, Caddell D, Zhang W, Zhao X, Li X, Heazlewood JL, Ruan D, Majumder D, Chern M, Kalbacher H, Midha S, Patil PB, Sonti RV, Petzold CJ, Liu CC, Brodbelt JS, Felix G, Ronald P. The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium. Sci Adv. 2015 Jul; 1(6):e1500245. PMID: 26601222.
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      21. Li W, Liu Y, Wang J, He M, Zhou X, Yang C, Yuan C, Wang J, Chern M, Yin J, Chen W, Ma B, Wang Y, Qin P, Li S, Ronald P, Chen X. The durably resistant rice cultivar Digu activates defence gene expression before the full maturation of Magnaporthe oryzae appressorium. Mol Plant Pathol. 2016 Apr; 17(3):354-68. PMID: 26095454.
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      22. Caddell DF, Wei T, Park CJ, Ronald P. The Use of a Dexamethasone-inducible System to Synchronize Xa21 Expression to Study Rice Immunity. Bio Protoc. 2015 May 05; 5(9). PMID: 27525297.
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      23. Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald P. Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses. PLoS Pathog. 2015 Apr; 11(4):e1004872. PMID: 25906371.
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      24. Schwessinger B, Bahar O, Thomas N, Holton N, Nekrasov V, Ruan D, Canlas PE, Daudi A, Petzold CJ, Singan VR, Kuo R, Chovatia M, Daum C, Heazlewood JL, Zipfel C, Ronald P. Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses. PLoS Pathog. 2015 Mar; 11(3):e1004809. PMID: 25821973.
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      25. Lao J, Sharma MK, Sharma R, Fernández-Niño SM, Schmutz J, Ronald P, Heazlewood JL, Schwessinger B. Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum). Proteomics. 2015 Jul; 15(13):2286-90. PMID: 25677556.
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      26. Holton N, Nekrasov V, Ronald P, Zipfel C. The Phylogenetically-Related Pattern Recognition Receptors EFR and XA21 Recruit Similar Immune Signaling Components in Monocots and Dicots. PLoS Pathog. 2015 Jan; 11(1):e1004602. PMID: 25607985.
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      27. Vega-Sánchez ME, Loqué D, Lao J, Catena M, Verhertbruggen Y, Herter T, Yang F, Harholt J, Ebert B, Baidoo EE, Keasling JD, Scheller HV, Heazlewood JL, Ronald P. Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls. Plant Biotechnol J. 2015 Sep; 13(7):903-14. PMID: 25586315.
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      28. McAndrew R, Pruitt RN, Kamita SG, Pereira JH, Majumdar D, Hammock BD, Adams PD, Ronald P. Structure of the OsSERK2 leucine-rich repeat extracellular domain. Acta Crystallogr D Biol Crystallogr. 2014 Nov; 70(Pt 11):3080-6. PMID: 25372696.
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      29. Ronald P. The Role of RaxST, a Prokaryotic Sulfotransferase, and RaxABC, a Putative Type I Secretion System, in Activation of the Rice XA21-Mediated Immune Response. Scientifica (Cairo). 2014; 2014:532816. PMID: 25386383.
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      30. Lao J, Oikawa A, Bromley JR, McInerney P, Suttangkakul A, Smith-Moritz AM, Plahar H, Chiu TY, González Fernández-Niño SM, Ebert B, Yang F, Christiansen KM, Hansen SF, Stonebloom S, Adams PD, Ronald P, Hillson NJ, Hadi MZ, Vega-Sánchez ME, Loqué D, Scheller HV, Heazlewood JL. The plant glycosyltransferase clone collection for functional genomics. Plant J. 2014 Aug; 79(3):517-29. PMID: 24905498.
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      31. Chern M, Bai W, Ruan D, Oh T, Chen X, Ronald P. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics. 2014; 15(1):461. PMID: 24919709.
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      32. Ronald P. Lab to farm: applying research on plant genetics and genomics to crop improvement. PLoS Biol. 2014 Jun; 12(6):e1001878. PMID: 24915201.
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      33. Park CJ, Song MY, Kim CY, Jeon JS, Ronald P. Rice BiP3 regulates immunity mediated by the PRRs XA3 and XA21 but not immunity mediated by the NB-LRR protein, Pi5. Biochem Biophys Res Commun. 2014 May 23; 448(1):70-5. PMID: 24780396.
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      34. Tripathi JN, Lorenzen J, Bahar O, Ronald P, Tripathi L. Transgenic expression of the rice Xa21 pattern-recognition receptor in banana (Musa sp.) confers resistance to Xanthomonas campestris pv. musacearum. Plant Biotechnol J. 2014 Aug; 12(6):663-73. PMID: 24612254.
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      35. Chen X, Zuo S, Schwessinger B, Chern M, Canlas PE, Ruan D, Zhou X, Wang J, Daudi A, Petzold CJ, Heazlewood JL, Ronald P. An XA21-Associated Kinase (OsSERK2) Regulates Immunity Mediated by the XA21 and XA3 Immune Receptors. Mol Plant. 2014 May; 7(5):874-92. PMID: 24482436.
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      36. Lee SW, Han SW, Sririyanum M, Park CJ, Seo YS, Ronald P. Retraction. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science. 2013 Oct 11; 342(6155):191. PMID: 24115421.
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      37. Sharma R, Cao P, Jung KH, Sharma MK, Ronald P. Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research. Front Plant Sci. 2013; 4:330. PMID: 23986771.
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      38. Yang B, Ruan R, Cantu D, Wang X, Ji W, Ronald P, Dubcovsky J. A comparative approach expands the protein-protein interaction node of the immune receptor XA21 in wheat and rice. Genome. 2013 Jun; 56(6):315-26. PMID: 23957671.
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      39. Park CJ, Sharma R, Lefebvre B, Canlas PE, Ronald P. The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice. Plant Sci. 2013 Sep; 210:53-60. PMID: 23849113.
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      40. Rodrigues JA, Ruan R, Nishimura T, Sharma MK, Sharma R, Ronald P, Fischer RL, Zilberman D. Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm. Proc Natl Acad Sci U S A. 2013 May 7; 110(19):7934-9. PMID: 23613580.
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      41. Chiniquy D, Varanasi P, Oh T, Harholt J, Katnelson J, Singh S, Auer M, Simmons B, Adams PD, Scheller HV, Ronald P. Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis. Front Plant Sci. 2013; 4:83. PMID: 23596448.
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      42. Schmitz AJ, Folsom JJ, Jikamaru Y, Ronald P, Walia H. SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway. New Phytol. 2013 Jun; 198(4):1060-70. PMID: 23496140.
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      43. Cantu D, Yang B, Ruan R, Li K, Menzo V, Fu D, Chern M, Ronald P, Dubcovsky J. Comparative analysis of protein-protein interactions in the defense response of rice and wheat. BMC Genomics. 2013; 14:166. PMID: 23496930.
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      44. Zhang JY, Lee YC, Torres-Jerez I, Wang M, Yin Y, Chou WC, He J, Shen H, Srivastava AC, Pennacchio C, Lindquist E, Grimwood J, Schmutz J, Xu Y, Sharma M, Sharma R, Bartley LE, Ronald P, Saha MC, Dixon RA, Tang Y, Udvardi MK. Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.). Plant J. 2013 Apr; 74(1):160-73. PMID: 23289674.
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      45. Chern M, Bai W, Chen X, Canlas PE, Ronald P. Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice. PeerJ. 2013; 1:e28. PMID: 23638363.
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      46. Bartley LE, Peck ML, Kim SR, Ebert B, Manisseri C, Chiniquy DM, Sykes R, Gao L, Rautengarten C, Vega-Sánchez ME, Benke PI, Canlas PE, Cao P, Brewer S, Lin F, Smith WL, Zhang X, Keasling JD, Jentoff RE, Foster SB, Zhou J, Ziebell A, An G, Scheller HV, Ronald P. Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification. Plant Physiol. 2013 Apr; 161(4):1615-33. PMID: 23391577.
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      47. Vega-Sánchez ME, Verhertbruggen Y, Scheller HV, Ronald P. Abundance of mixed linkage glucan in mature tissues and secondary cell walls of grasses. Plant Signal Behav. 2013 Feb 1; 8(2). PMID: 23299432.
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      48. Sharma R, De Vleesschauwer D, Sharma MK, Ronald P. Recent advances in dissecting stress-regulatory crosstalk in rice. Mol Plant. 2013 Mar; 6(2):250-60. PMID: 23292878.
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      49. Jung KH, Ronald P. Transcriptome profiling analysis using rice oligonucleotide microarrays. Methods Mol Biol. 2013; 956:95-107. PMID: 23135847.
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      50. Chen X, Vega-Sánchez ME, Verhertbruggen Y, Chiniquy D, Canlas PE, Fagerström A, Prak L, Christensen U, Oikawa A, Chern M, Zuo S, Lin F, Auer M, Willats WG, Bartley L, Harholt J, Scheller HV, Ronald P. Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification. Mol Plant. 2013 Mar; 6(2):570-3. PMID: 23180670.
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      51. Chiniquy D, Sharma V, Schultink A, Baidoo EE, Rautengarten C, Cheng K, Carroll A, Ulvskov P, Harholt J, Keasling JD, Pauly M, Scheller HV, Ronald P. XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A. 2012 Oct 16; 109(42):17117-22. PMID: 23027943.
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      52. Park CJ, Caddell DF, Ronald P. Protein phosphorylation in plant immunity: insights into the regulation of pattern recognition receptor-mediated signaling. Front Plant Sci. 2012; 3:177. PMID: 22876255.
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      53. Park CJ, Ronald P. Cleavage and nuclear localization of the rice XA21 immune receptor. Nat Commun. 2012; 3:920. PMID: 22735448.
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      54. Dardick C, Schwessinger B, Ronald P. Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures. Curr Opin Plant Biol. 2012 Aug; 15(4):358-66. PMID: 22658367.
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      55. Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald P, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM. Reference genome sequence of the model plant Setaria. Nat Biotechnol. 2012 Jun; 30(6):555-61. PMID: 22580951.
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      56. Sharma MK, Sharma R, Cao P, Jenkins J, Bartley LE, Qualls M, Grimwood J, Schmutz J, Rokhsar D, Ronald P. A genome-wide survey of switchgrass genome structure and organization. PLoS One. 2012; 7(4):e33892. PMID: 22511929.
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      57. Vega-Sánchez ME, Verhertbruggen Y, Christensen U, Chen X, Sharma V, Varanasi P, Jobling SA, Talbot M, White RG, Joo M, Singh S, Auer M, Scheller HV, Ronald P. Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice. Plant Physiol. 2012 May; 159(1):56-69. PMID: 22388489.
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      58. Schwessinger B, Ronald P. Plant innate immunity: perception of conserved microbial signatures. Annu Rev Plant Biol. 2012; 63:451-82. PMID: 22404464.
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      59. Han SW, Lee SW, Bahar O, Schwessinger B, Robinson MR, Shaw JB, Madsen JA, Brodbelt JS, Ronald P. Tyrosine sulfation in a Gram-negative bacterium. Nat Commun. 2012; 3:1153. PMID: 23093190.
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      60. Han SW, Sriariyanun M, Lee SW, Sharma M, Bahar O, Bower Z, Ronald P. Small protein-mediated quorum sensing in a Gram-negative bacterium. PLoS One. 2011; 6(12):e29192. PMID: 22174954.
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      61. Ronald P. Small protein-mediated quorum sensing in a gram-negative bacterium: novel targets for control of infectious disease. Discov Med. 2011 Dec; 12(67):461-70. PMID: 22204763.
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      62. Sharma R, Tan F, Jung KH, Sharma MK, Peng Z, Ronald P. Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice. Plant Mol Biol. 2011 Nov; 77(4-5):391-406. PMID: 21887580.
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      63. Smith-Moritz AM, Chern M, Lao J, Sze-To WH, Heazlewood JL, Ronald P, Vega-Sánchez ME. Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier Transform Near Infrared spectroscopy. Plant Methods. 2011; 7:26. PMID: 21851585.
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      64. Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald P, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. J Bacteriol. 2011 Oct; 193(19):5450-64. PMID: 21784931.
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      65. Chen X, Ronald P. Innate immunity in rice. Trends Plant Sci. 2011 Aug; 16(8):451-9. PMID: 21602092.
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      66. Ronald P. Plant genetics, sustainable agriculture and global food security. Genetics. 2011 May; 188(1):11-20. PMID: 21546547.
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      67. Seo YS, Chern M, Bartley LE, Han M, Jung KH, Lee I, Walia H, Richter T, Xu X, Cao P, Bai W, Ramanan R, Amonpant F, Arul L, Canlas PE, Ruan R, Park CJ, Chen X, Hwang S, Jeon JS, Ronald P. Towards establishment of a rice stress response interactome. PLoS Genet. 2011 Apr; 7(4):e1002020. PMID: 21533176.
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      68. Bai W, Chern M, Ruan D, Canlas PE, Sze-To WH, Ronald P. Enhanced disease resistance and hypersensitivity to BTH by introduction of an NH1/OsNPR1 paralog. Plant Biotechnol J. 2011 Feb; 9(2):205-15. PMID: 20561248.
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      69. Han SW, Lee SW, Ronald P. Secretion, modification, and regulation of Ax21. Curr Opin Microbiol. 2011 Feb; 14(1):62-7. PMID: 21236725.
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      70. Laurent JM, Vogel C, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald P, Marcotte EM. Protein abundances are more conserved than mRNA abundances across diverse taxa. Proteomics. 2010 Dec; 10(23):4209-12. PMID: 21089048.
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      71. Ronald P, Beutler B. Plant and animal sensors of conserved microbial signatures. Science. 2010 Nov 19; 330(6007):1061-4. PMID: 21097929.
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      72. Park CJ, Lee SW, Chern M, Sharma R, Canlas PE, Song MY, Jeon JS, Ronald P. Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae. Plant Sci. 2010 Nov; 179(5):466-71. PMID: 21076626.
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      73. Bart RS, Chern M, Vega-Sánchez ME, Canlas P, Ronald P. Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae. PLoS Genet. 2010 Sep; 6(9):e1001123. PMID: 20862311.
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      74. Jung KH, Cao P, Seo YS, Dardick C, Ronald P. The Rice Kinase Phylogenomics Database: a guide for systematic analysis of the rice kinase super-family. Trends Plant Sci. 2010 Nov; 15(11):595-9. PMID: 20832349.
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      75. Park CJ, Han SW, Chen X, Ronald P. Elucidation of XA21-mediated innate immunity. Cell Microbiol. 2010 Aug; 12(8):1017-25. PMID: 20590657.
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      76. Chen X, Chern M, Canlas PE, Ruan D, Jiang C, Ronald P. An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity. Proc Natl Acad Sci U S A. 2010 Apr 27; 107(17):8029-34. PMID: 20385831.
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      77. Ronald P, Adamchak R. The future of sustainable food production. Ann N Y Acad Sci. 2010 Mar; 1190:184-5. PMID: 20388151.
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      78. Vega-Sánchez ME, Ronald P. Genetic and biotechnological approaches for biofuel crop improvement. Curr Opin Biotechnol. 2010 Apr; 21(2):218-24. PMID: 20181473.
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      79. Peng Y, Bartley LE, Canlas P, Ronald P. OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y). 2010 Mar; 3(1):36-42. PMID: 21961049.
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      80. Park CJ, Bart R, Chern M, Canlas PE, Bai W, Ronald P. Overexpression of the endoplasmic reticulum chaperone BiP3 regulates XA21-mediated innate immunity in rice. PLoS One. 2010; 5(2):e9262. PMID: 20174657.
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      81. Zhao N, Guan J, Ferrer JL, Engle N, Chern M, Ronald P, Tschaplinski TJ, Chen F. Biosynthesis and emission of insect-induced methyl salicylate and methyl benzoate from rice. Plant Physiol Biochem. 2010 Apr; 48(4):279-87. PMID: 20199866.
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      82. Chen X, Chern M, Canlas PE, Jiang C, Ruan D, Cao P, Ronald P. A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity. J Biol Chem. 2010 Apr 2; 285(14):10454-63. PMID: 20118235.
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      83. Jung KH, Seo YS, Walia H, Cao P, Fukao T, Canlas PE, Amonpant F, Bailey-Serres J, Ronald P. The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiol. 2010 Mar; 152(3):1674-92. PMID: 20107022.
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      84. Lee SW, Han SW, Sririyanum M, Park CJ, Seo YS, Ronald P. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science. 2009 Nov 6; 326(5954):850-3. PMID: 19892983.
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      85. Qu S, Jeon JS, Ouwerkerk PB, Bellizzi M, Leach J, Ronald P, Wang GL. Construction and application of efficient Ac-Ds transposon tagging vectors in rice. J Integr Plant Biol. 2009 Nov; 51(11):982-92. PMID: 19903220.
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      87. Lee SK, Song MY, Seo YS, Kim HK, Ko S, Cao PJ, Suh JP, Yi G, Roh JH, Lee S, An G, Hahn TR, Wang GL, Ronald P, Jeon JS. Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes. Genetics. 2009 Apr; 181(4):1627-38. PMID: 19153255.
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      88. Ding X, Richter T, Chen M, Fujii H, Seo YS, Xie M, Zheng X, Kanrar S, Stevenson RA, Dardick C, Li Y, Jiang H, Zhang Y, Yu F, Bartley LE, Chern M, Bart R, Chen X, Zhu L, Farmerie WG, Gribskov M, Zhu JK, Fromm ME, Ronald P, Song WY. A rice kinase-protein interaction map. Plant Physiol. 2009 Mar; 149(3):1478-92. PMID: 19109415.
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      95. Peng Y, Bartley LE, Chen X, Dardick C, Chern M, Ruan R, Canlas PE, Ronald P. OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice. Mol Plant. 2008 May; 1(3):446-58. PMID: 19825552.
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      97. Chern M, Canlas PE, Ronald P. Strong suppression of systemic acquired resistance in Arabidopsis by NRR is dependent on its ability to interact with NPR1 and its putative repression domain. Mol Plant. 2008 May; 1(3):552-9. PMID: 19825560.
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      98. Jung KH, An G, Ronald P. Towards a better bowl of rice: assigning function to tens of thousands of rice genes. Nat Rev Genet. 2008 Feb; 9(2):91-101. PMID: 18160965.
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      99. Lee SW, Jeong KS, Han SW, Lee SE, Phee BK, Hahn TR, Ronald P. The Xanthomonas oryzae pv. oryzae PhoPQ two-component system is required for AvrXA21 activity, hrpG expression, and virulence. J Bacteriol. 2008 Mar; 190(6):2183-97. PMID: 18203830.
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      100. Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW. Global identification and characterization of transcriptionally active regions in the rice genome. PLoS One. 2007; 2(3):e294. PMID: 17372628.
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      101. Chern M, Richter T, Ronald P. Yeast two-hybrid approaches to dissecting the plant defense response. Methods Mol Biol. 2007; 354:79-83. PMID: 17172746.
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      102. Lee SW, Ronald P. Marker-exchange mutagenesis and complementation strategies for the Gram-negative bacteria Xanthomonas oryzae pv. oryzae. Methods Mol Biol. 2007; 354:11-8. PMID: 17172740.
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      103. Wang YS, Pi LY, Chen X, Chakrabarty PK, Jiang J, De Leon AL, Liu GZ, Li L, Benny U, Oard J, Ronald P, Song WY. Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance. Plant Cell. 2006 Dec; 18(12):3635-46. PMID: 17172358.
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      104. Lee SW, Han SW, Bartley LE, Ronald P. From the Academy: Colloquium review. Unique characteristics of Xanthomonas oryzae pv. oryzae AvrXa21 and implications for plant innate immunity. Proc Natl Acad Sci U S A. 2006 Dec 5; 103(49):18395-400. PMID: 17082309.
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      105. Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald P, Mackill DJ. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature. 2006 Aug 10; 442(7103):705-8. PMID: 16900200.
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      106. Seo YS, Rojas MR, Lee JY, Lee SW, Jeon JS, Ronald P, Lucas WJ, Gilbertson RL. A viral resistance gene from common bean functions across plant families and is up-regulated in a non-virus-specific manner. Proc Natl Acad Sci U S A. 2006 Aug 8; 103(32):11856-61. PMID: 16880399.
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      107. Fukao T, Xu K, Ronald P, Bailey-Serres J. A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. Plant Cell. 2006 Aug; 18(8):2021-34. PMID: 16816135.
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      108. Bart R, Chern M, Park CJ, Bartley L, Ronald P. A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts. Plant Methods. 2006; 2:13. PMID: 16808845.
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      109. Bart R, Ronald P, Hake S. Fertility versus disease resistance, a hard choice. Genes Dev. 2006 May 15; 20(10):1215-7. PMID: 16702399.
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      110. Rohila JS, Chen M, Chen S, Chen J, Cerny R, Dardick C, Canlas P, Xu X, Gribskov M, Kanrar S, Zhu JK, Ronald P, Fromm ME. Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice. Plant J. 2006 Apr; 46(1):1-13. PMID: 16553892.
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      111. Dardick C, Ronald P. Plant and animal pathogen recognition receptors signal through non-RD kinases. PLoS Pathog. 2006 Jan; 2(1):e2. PMID: 16424920.
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      112. Chern M, Canlas PE, Fitzgerald HA, Ronald P. Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1. Plant J. 2005 Sep; 43(5):623-35. PMID: 16115061.
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      113. Fitzgerald HA, Canlas PE, Chern MS, Ronald P. Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae. Plant J. 2005 Aug; 43(3):335-47. PMID: 16045470.
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      114. Chern M, Fitzgerald HA, Canlas PE, Navarre DA, Ronald P. Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol Plant Microbe Interact. 2005 Jun; 18(6):511-20. PMID: 15986920.
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      115. Campbell MA, Ronald P. Characterization of four rice mutants with alterations in the defence response pathway. Mol Plant Pathol. 2005 Jan 1; 6(1):11-21. PMID: 20565634.
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      116. Burdman S, Shen Y, Lee SW, Xue Q, Ronald P. RaxH/RaxR: a two-component regulatory system in Xanthomonas oryzae pv. oryzae required for AvrXa21 activity. Mol Plant Microbe Interact. 2004 Jun; 17(6):602-12. PMID: 15195943.
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      117. da Silva FG, Shen Y, Dardick C, Burdman S, Yadav RC, de Leon AL, Ronald P. Bacterial genes involved in type I secretion and sulfation are required to elicit the rice Xa21-mediated innate immune response. Mol Plant Microbe Interact. 2004 Jun; 17(6):593-601. PMID: 15195942.
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      118. Fitzgerald HA, Chern MS, Navarre R, Ronald P. Overexpression of (At)NPR1 in rice leads to a BTH- and environment-induced lesion-mimic/cell death phenotype. Mol Plant Microbe Interact. 2004 Feb; 17(2):140-51. PMID: 14964528.
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      119. Wang GL, Wu C, Zeng L, He C, Baraoidan M, de Assis Goes da Silva F, Williams CE, Ronald P, Leung H. Isolation and characterization of rice mutants compromised in Xa21-mediated resistance to X. oryzae pv. oryzae. Theor Appl Genet. 2004 Feb; 108(3):379-84. PMID: 14523518.
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      120. Kachroo A, He Z, Patkar R, Zhu Q, Zhong J, Li D, Ronald P, Lamb C, Chattoo BB. Induction of H2O2 in transgenic rice leads to cell death and enhanced resistance to both bacterial and fungal pathogens. Transgenic Res. 2003 Oct; 12(5):577-86. PMID: 14601656.
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      121. Jeon JS, Chen D, Yi GH, Wang GL, Ronald P. Genetic and physical mapping of Pi5(t), a locus associated with broad-spectrum resistance to rice blast. Mol Genet Genomics. 2003 May; 269(2):280-9. PMID: 12756540.
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      122. Campbell MA, Fitzgerald HA, Ronald P. Engineering pathogen resistance in crop plants. Transgenic Res. 2002 Dec; 11(6):599-613. PMID: 12509135.
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      123. Shen Y, Ronald P. Molecular determinants of disease and resistance in interactions of Xanthomonas oryzae pv. oryzae and rice. Microbes Infect. 2002 Nov; 4(13):1361-7. PMID: 12443901.
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      124. Ronald P, Leung H. The rice genome. The most precious things are not jade and pearls. Science. 2002 Apr 5; 296(5565):58-9. PMID: 11935008.
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      125. Shen Y, Sharma P, da Silva FG, Ronald P. The Xanthomonas oryzae pv. lozengeoryzae raxP and raxQ genes encode an ATP sulphurylase and adenosine-5'-phosphosulphate kinase that are required for AvrXa21 avirulence activity. Mol Microbiol. 2002 Apr; 44(1):37-48. PMID: 11967067.
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      126. Liu GZ, Pi LY, Walker JC, Ronald P, Song WY. Biochemical characterization of the kinase domain of the rice disease resistance receptor-like kinase XA21. J Biol Chem. 2002 Jun 7; 277(23):20264-9. PMID: 11927577.
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      127. Li X, Song Y, Century K, Straight S, Ronald P, Dong X, Lassner M, Zhang Y. A fast neutron deletion mutagenesis-based reverse genetics system for plants. Plant J. 2001 Aug; 27(3):235-42. PMID: 11532169.
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      128. Chern MS, Fitzgerald HA, Yadav RC, Canlas PE, Dong X, Ronald P. Evidence for a disease-resistance pathway in rice similar to the NPR1-mediated signaling pathway in Arabidopsis. Plant J. 2001 Jul; 27(2):101-13. PMID: 11489188.
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      129. Shen Y, Chern M, Silva FG, Ronald P. Isolation of a Xanthomonas oryzae pv. oryzae flagellar operon region and molecular characterization of flhF. Mol Plant Microbe Interact. 2001 Feb; 14(2):204-13. PMID: 11204784.
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      130. Ilag LL, Yadav RC, Huang N, Ronald P, Ausubel FM. Isolation and characterization of disease resistance gene homologues from rice cultivar IR64. Gene. 2000 Sep 19; 255(2):245-55. PMID: 11024284.
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      131. He ZH, Dong HT, Dong JX, Li DB, Ronald P. The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons. Mol Gen Genet. 2000 Sep; 264(1-2):2-10. PMID: 11016827.
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      132. He Z, Wang ZY, Li J, Zhu Q, Lamb C, Ronald P, Chory J. Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1. Science. 2000 Jun 30; 288(5475):2360-3. PMID: 10875920.
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      133. Xu K, Xu X, Ronald P, Mackill DJ. A high-resolution linkage map of the vicinity of the rice submergence tolerance locus Sub1. Mol Gen Genet. 2000 May; 263(4):681-9. PMID: 10852491.
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      134. Richter TE, Ronald P. The evolution of disease resistance genes. Plant Mol Biol. 2000 Jan; 42(1):195-204. PMID: 10688137.
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      135. Century KS, Lagman RA, Adkisson M, Morlan J, Tobias R, Schwartz K, Smith A, Love J, Ronald P, Whalen MC. Short communication: developmental control of Xa21-mediated disease resistance in rice. Plant J. 1999 Oct; 20(2):231-6. PMID: 10571882.
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      136. van der Knaap E, Song WY, Ruan DL, Sauter M, Ronald P, Kende H. Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase. Plant Physiol. 1999 Jun; 120(2):559-70. PMID: 10364408.
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      139. Wang GL, Ruan DL, Song WY, Sideris S, Chen L, Pi LY, Zhang S, Zhang Z, Fauquet C, Gaut BS, Whalen MC, Ronald P. Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell. 1998 May; 10(5):765-79. PMID: 9596635.
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      140. Ronald P. The molecular basis of disease resistance in rice. Plant Mol Biol. 1997 Sep; 35(1-2):179-86. PMID: 9291971.
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      141. Song WY, Pi LY, Wang GL, Gardner J, Holsten T, Ronald P. Evolution of the rice Xa21 disease resistance gene family. Plant Cell. 1997 Aug; 9(8):1279-87. PMID: 9286106.
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      142. Wang GL, Song WY, Ruan DL, Sideris S, Ronald P. The cloned gene, Xa21, confers resistance to multiple Xanthomonas oryzae pv. oryzae isolates in transgenic plants. Mol Plant Microbe Interact. 1996 Dec; 9(9):850-5. PMID: 8969533.
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      143. Williams CE, Wang B, Holsten TE, Scambray J, de Assis Goes da Silva F, Ronald P. Markers for selection of the rice Xa21 disease resistance gene. Theor Appl Genet. 1996 Nov; 93(7):1119-22. PMID: 24162490.
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      144. Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science. 1995 Dec 15; 270(5243):1804-6. PMID: 8525370.
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      145. Wang GL, Holsten TE, Song WY, Wang HP, Ronald P. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 1995 Mar; 7(3):525-33. PMID: 7757120.
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      146. Williams CE, Ronald P. PCR template-DNA isolated quickly from monocot and dicot leaves without tissue homogenization. Nucleic Acids Res. 1994 May 25; 22(10):1917-8. PMID: 8208619.
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      147. Ronald P, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD. Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21. Mol Gen Genet. 1992 Dec; 236(1):113-20. PMID: 1362973.
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      148. Ronald P, Salmeron JM, Carland FM, Staskawicz BJ. The cloned avirulence gene avrPto induces disease resistance in tomato cultivars containing the Pto resistance gene. J Bacteriol. 1992 Mar; 174(5):1604-11. PMID: 1537802.
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      149. Ronald P, Staskawicz BJ. The avirulence gene avrBs1 from Xanthomonas campestris pv. vesicatoria encodes a 50-kD protein. Mol Plant Microbe Interact. 1988 May-Jun; 1(5):191-8. PMID: 2979910.
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