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Hallatschek, Oskar

TitleBiologist Faculty Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentEnviron Genomics & Systems Bio
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/495-2116
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Kayser J, Schreck CF, Yu Q, Gralka M, Hallatschek O. Emergence of evolutionary driving forces in pattern-forming microbial populations. Philos Trans R Soc Lond B Biol Sci. 2018 May 26; 373(1747). PMID: 29632260.
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    2. Birzu G, Hallatschek O, Korolev KS. Fluctuations uncover a distinct class of traveling waves. Proc Natl Acad Sci U S A. 2018 Apr 17; 115(16):E3645-E3654. PMID: 29610340.
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    3. Delarue M, Poterewicz G, Hoxha O, Choi J, Yoo W, Kayser J, Holt L, Hallatschek O. SCWISh network is essential for survival under mechanical pressure. Proc Natl Acad Sci U S A. 2017 Dec 19; 114(51):13465-13470. PMID: 29187529.
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    4. Delarue M, Weissman D, Hallatschek O. A simple molecular mechanism explains multiple patterns of cell-size regulation. PLoS One. 2017; 12(8):e0182633. PMID: 28813456.
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    5. Gralka M, Fusco D, Martis S, Hallatschek O. Convection shapes the trade-off between antibiotic efficacy and the selection for resistance in spatial gradients. Phys Biol. 2017 Jul 19; 14(4):045011. PMID: 28649977.
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    6. Weissman DB, Hallatschek O. Minimal-assumption inference from population-genomic data. Elife. 2017 07 03; 6. PMID: 28671549.
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    7. Farrell FD, Gralka M, Hallatschek O, Waclaw B. Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations. J R Soc Interface. 2017 Jun; 14(131). PMID: 28592660.
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    8. Fusco D, Gralka M, Kayser J, Anderson A, Hallatschek O. Excess of mutational jackpot events in expanding populations revealed by spatial Luria-Delbrück experiments. Nat Commun. 2016 Oct 03; 7:12760. PMID: 27694797.
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    9. Buss C, Heussinger C, Hallatschek O. Thermalized connectivity networks of jammed packings. Soft Matter. 2016 Sep 28; 12(36):7682-7. PMID: 27491337.
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    10. Gralka M, Fusco D, Hallatschek O. Watching Populations Melt Down. Biophys J. 2016 Jul 26; 111(2):271-272. PMID: 27463129; PMCID: PMC4968479 [Available on 07/26/17].
    11. Gralka M, Stiewe F, Farrell F, Möbius W, Waclaw B, Hallatschek O. Allele surfing promotes microbial adaptation from standing variation. Ecol Lett. 2016 08; 19(8):889-98. PMID: 27307400; PMCID: PMC4942372 [Available on 08/01/17].
    12. Delarue M, Hartung J, Schreck C, Gniewek P, Hu L, Herminghaus S, Hallatschek O. Self-Driven Jamming in Growing Microbial Populations. Nat Phys. 2016 Aug; 12(8):762-766. PMID: 27642362.
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    13. Hallatschek O, Geyrhofer L. Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves. Genetics. 2016 Mar; 202(3):1201-27. PMID: 26819246; PMCID: PMC4788118 [Available on 03/01/17].
    14. Sedeh RS, Pan K, Adendorff MR, Hallatschek O, Bathe KJ, Bathe M. Computing Nonequilibrium Conformational Dynamics of Structured Nucleic Acid Assemblies. J Chem Theory Comput. 2016 Jan 12; 12(1):261-73. PMID: 26636351.
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    15. Hallatschek O, Fisher DS. Acceleration of evolutionary spread by long-range dispersal. Proc Natl Acad Sci U S A. 2014 Nov 18; 111(46):E4911-9. PMID: 25368183; PMCID: PMC4246332.
    16. Weissman DB, Hallatschek O. The rate of adaptation in large sexual populations with linear chromosomes. Genetics. 2014 Apr; 196(4):1167-83. PMID: 24429280; PMCID: PMC3982688.
    17. Farrell FD, Hallatschek O, Marenduzzo D, Waclaw B. Mechanically driven growth of quasi-two-dimensional microbial colonies. Phys Rev Lett. 2013 Oct 18; 111(16):168101. PMID: 24182305.
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    18. Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature. 2013 Aug 22; 500(7463):453-7. PMID: 23873043.
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    19. Martens EA, Thutupalli S, Fourrière A, Hallatschek O. Chimera states in mechanical oscillator networks. Proc Natl Acad Sci U S A. 2013 Jun 25; 110(26):10563-7. PMID: 23759743; PMCID: PMC3696826.
    20. Nullmeier J, Hallatschek O. The coalescent in boundary-limited range expansions. Evolution. 2013 May; 67(5):1307-20. PMID: 23617910.
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    21. Neher RA, Hallatschek O. Genealogies of rapidly adapting populations. Proc Natl Acad Sci U S A. 2013 Jan 08; 110(2):437-42. PMID: 23269838; PMCID: PMC3545819.
    22. Korolev KS, Müller MJ, Karahan N, Murray AW, Hallatschek O, Nelson DR. Selective sweeps in growing microbial colonies. Phys Biol. 2012; 9(2):026008. PMID: 22476106; PMCID: PMC3359763.
    23. Lehe R, Hallatschek O, Peliti L. The rate of beneficial mutations surfing on the wave of a range expansion. PLoS Comput Biol. 2012; 8(3):e1002447. PMID: 22479175; PMCID: PMC3315454.
    24. Good BH, Rouzine IM, Balick DJ, Hallatschek O, Desai MM. Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. Proc Natl Acad Sci U S A. 2012 Mar 27; 109(13):4950-5. PMID: 22371564; PMCID: PMC3323973.
    25. Martens EA, Kostadinov R, Maley CC, Hallatschek O. Spatial structure increases the waiting time for cancer. New J Phys. 2011 Nov 01; 13. PMID: 22707911.
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    26. Martens EA, Hallatschek O. Interfering waves of adaptation promote spatial mixing. Genetics. 2011 Nov; 189(3):1045-60. PMID: 21900264; PMCID: PMC3213383.
    27. Hallatschek O. Noise driven evolutionary waves. PLoS Comput Biol. 2011 Mar; 7(3):e1002005. PMID: 21423714; PMCID: PMC3053316.
    28. Hallatschek O. The noisy edge of traveling waves. Proc Natl Acad Sci U S A. 2011 Feb 01; 108(5):1783-7. PMID: 21187435; PMCID: PMC3033244.
    29. Korolev KS, Avlund M, Hallatschek O, Nelson DR. Genetic demixing and evolution in linear stepping stone models. Rev Mod Phys. 2010 Jun 01; 82(2):1691-1718. PMID: 21072144.
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    30. Hallatschek O, Korolev KS. Fisher waves in the strong noise limit. Phys Rev Lett. 2009 Sep 04; 103(10):108103. PMID: 19792344.
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    31. Hallatschek O, Nelson DR. Life at the front of an expanding population. Evolution. 2010 Jan; 64(1):193-206. PMID: 19682067.
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    32. Obermayer B, Möbius W, Hallatschek O, Frey E, Kroy K. Freely relaxing polymers remember how they were straightened. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Feb; 79(2 Pt 1):021804. PMID: 19391769.
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    33. Glaser J, Hallatschek O, Kroy K. Dynamic structure factor of a stiff polymer in a glassy solution. Eur Phys J E Soft Matter. 2008 May-Jun; 26(1-2):123-36. PMID: 18491032.
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    34. Hallatschek O, Hersen P, Ramanathan S, Nelson DR. Genetic drift at expanding frontiers promotes gene segregation. Proc Natl Acad Sci U S A. 2007 Dec 11; 104(50):19926-30. PMID: 18056799; PMCID: PMC2148399.
    35. Hallatschek O, Nelson DR. Gene surfing in expanding populations. Theor Popul Biol. 2008 Feb; 73(1):158-70. PMID: 17963807.
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    36. Obermayer B, Hallatschek O. Coupling of transverse and longitudinal response in stiff polymers. Phys Rev Lett. 2007 Aug 31; 99(9):098302. PMID: 17931042.
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    37. Obermayer B, Hallatschek O, Frey E, Kroy K. Stretching dynamics of semiflexible polymers. Eur Phys J E Soft Matter. 2007 Aug; 23(4):375-88. PMID: 17728980.
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    38. Hallatschek O, Frey E, Kroy K. Tension dynamics in semiflexible polymers. I. Coarse-grained equations of motion. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar; 75(3 Pt 1):031905. PMID: 17500724.
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    39. Hallatschek O, Frey E, Kroy K. Tension dynamics in semiflexible polymers. II. Scaling solutions and applications. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar; 75(3 Pt 1):031906. PMID: 17500725.
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    40. Munk T, Hallatschek O, Wiggins CH, Frey E. Dynamics of semiflexible polymers in a flow field. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Oct; 74(4 Pt 1):041911. PMID: 17155100.
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    41. Hallatschek O, Frey E, Kroy K. Propagation and relaxation of tension in stiff polymers. Phys Rev Lett. 2005 Feb 25; 94(7):077804. PMID: 15783856.
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    42. Hallatschek O, Frey E, Kroy K. Overdamped stress relaxation in buckled rods. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Sep; 70(3 Pt 1):031802. PMID: 15524542.
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    43. Le Goff L, Hallatschek O, Frey E, Amblard F. Tracer studies on f-actin fluctuations. Phys Rev Lett. 2002 Dec 16; 89(25):258101. PMID: 12484923.
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