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Hillson, Nathan

TitleComputer Staff Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/486-6754
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Barajas JF, Zargar A, Pang B, Benites VT, Gin J, Baidoo EEK, Petzold CJ, Hillson N, Keasling JD. Biochemical Characterization of ß-Amino Acid Incorporation in Fluvirucin B2 Biosynthesis. Chembiochem. 2018 Mar 30. PMID: 29603548.
      View in: PubMed
    2. Thompson MG, Sedaghatian N, Barajas JF, Wehrs M, Bailey CB, Kaplan N, Hillson N, Mukhopadhyay A, Keasling JD. Isolation and characterization of novel mutations in the pSC101 origin that increase copy number. Sci Rep. 2018 Jan 25; 8(1):1590. PMID: 29371642.
      View in: PubMed
    3. Dossani ZY, Reider Apel A, Szmidt-Middleton H, Hillson N, Deutsch S, Keasling JD, Mukhopadhyay A. A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering. Yeast. 2018 03; 35(3):273-280. PMID: 29084380.
      View in: PubMed
    4. Gach PC, Iwai K, Kim PW, Hillson N, Singh AK. Droplet microfluidics for synthetic biology. Lab Chip. 2017 10 11; 17(20):3388-3400. PMID: 28820204.
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    5. de Rond T, Stow P, Eigl I, Johnson RE, Chan LJG, Goyal G, Baidoo EEK, Hillson N, Petzold CJ, Sarpong R, Keasling JD. Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme. Nat Chem Biol. 2017 Nov; 13(11):1155-1157. PMID: 28892091.
      View in: PubMed
    6. Morrell WC, Birkel GW, Forrer M, Lopez T, Backman TWH, Dussault M, Petzold CJ, Baidoo EEK, Costello Z, Ando D, Alonso-Gutierrez J, George KW, Mukhopadhyay A, Vaino I, Keasling JD, Adams PD, Hillson N, Garcia Martin H. The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization. ACS Synth Biol. 2017 12 15; 6(12):2248-2259. PMID: 28826210.
      View in: PubMed
    7. Oberortner E, Cheng JF, Hillson N, Deutsch S. Streamlining the Design-to-Build Transition with Build-Optimization Software Tools. ACS Synth Biol. 2017 03 17; 6(3):485-496. PMID: 28004921.
      View in: PubMed
    8. Reider Apel A, d'Espaux L, Wehrs M, Sachs D, Li RA, Tong GJ, Garber M, Nnadi O, Zhuang W, Hillson N, Keasling JD, Mukhopadhyay A. A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae. Nucleic Acids Res. 2017 Jan 09; 45(1):496-508. PMID: 27899650.
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    9. Hillson N, Plahar HA, Beal J, Prithviraj R. Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs. ACS Synth Biol. 2016 06 17; 5(6):449-51. PMID: 27267452.
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    10. Javidpour P, Deutsch S, Mutalik VK, Hillson N, Petzold CJ, Keasling JD, Beller HR. Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. PLoS One. 2016; 11(3):e0151087. PMID: 26975050; PMCID: PMC4790861.
    11. Gach PC, Shih SC, Sustarich J, Keasling JD, Hillson N, Adams PD, Singh AK. A Droplet Microfluidic Platform for Automating Genetic Engineering. ACS Synth Biol. 2016 05 20; 5(5):426-33. PMID: 26830031.
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    12. Linshiz G, Jensen E, Stawski N, Bi C, Elsbree N, Jiao H, Kim J, Mathies R, Keasling JD, Hillson N. End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. J Biol Eng. 2016; 10:3. PMID: 26839585; PMCID: PMC4736182.
    13. Quinn JY, Cox RS, Adler A, Beal J, Bhatia S, Cai Y, Chen J, Clancy K, Galdzicki M, Hillson N, Le Novère N, Maheshwari AJ, McLaughlin JA, Myers CJ, P U, Pocock M, Rodriguez C, Soldatova L, Stan GB, Swainston N, Wipat A, Sauro HM. SBOL Visual: A Graphical Language for Genetic Designs. PLoS Biol. 2015 Dec; 13(12):e1002310. PMID: 26633141; PMCID: PMC4669170.
    14. Shih SC, Goyal G, Kim PW, Koutsoubelis N, Keasling JD, Adams PD, Hillson N, Singh AK. A Versatile Microfluidic Device for Automating Synthetic Biology. ACS Synth Biol. 2015 Oct 16; 4(10):1151-64. PMID: 26075958.
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    15. Alonso-Gutierrez J, Kim EM, Batth TS, Cho N, Hu Q, Chan LJG, Petzold CJ, Hillson N, Adams PD, Keasling JD, Garcia Martin H, Lee TS. Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering. Metab Eng. 2015 Mar; 28:123-133. PMID: 25554074.
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    16. Lee S, Geller JT, Torok T, Wu CH, Singer M, Reid FC, Tarjan DR, Hazen TC, Arkin AP, Hillson N. Characterization of wastewater treatment plant microbial communities and the effects of carbon sources on diversity in laboratory models. PLoS One. 2014; 9(8):e105689. PMID: 25148472; PMCID: PMC4141834.
    17. Lao J, Oikawa A, Bromley JR, McInerney P, Suttangkakul A, Smith-Moritz AM, Plahar H, Chiu TY, González Fernández-Niño SM, Ebert B, Yang F, Christiansen KM, Hansen SF, Stonebloom S, Adams PD, Ronald PC, Hillson N, Hadi MZ, Vega-Sánchez ME, Loqué D, Scheller HV, Heazlewood JL. The plant glycosyltransferase clone collection for functional genomics. Plant J. 2014 Aug; 79(3):517-29. PMID: 24905498.
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    18. Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson N, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nat Biotechnol. 2014 Jun; 32(6):545-50. PMID: 24911500.
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    19. Golberg A, Linshiz G, Kravets I, Stawski N, Hillson N, Yarmush ML, Marks RS, Konry T. Cloud-enabled microscopy and droplet microfluidic platform for specific detection of Escherichia coli in water. PLoS One. 2014; 9(1):e86341. PMID: 24475107; PMCID: PMC3903517.
    20. Linshiz G, Stawski N, Goyal G, Bi C, Poust S, Sharma M, Mutalik V, Keasling JD, Hillson N. PR-PR: cross-platform laboratory automation system. ACS Synth Biol. 2014 Aug 15; 3(8):515-24. PMID: 25126893.
      View in: PubMed
    21. Hillson N. j5 DNA assembly design automation. Methods Mol Biol. 2014; 1116:245-69. PMID: 24395369.
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    22. Bi C, Su P, Müller J, Yeh YC, Chhabra SR, Beller HR, Singer SW, Hillson N. Development of a broad-host synthetic biology toolbox for Ralstonia eutropha and its application to engineering hydrocarbon biofuel production. Microb Cell Fact. 2013 Nov 13; 12:107. PMID: 24219429; PMCID: PMC3831590.
    23. Müller J, MacEachran D, Burd H, Sathitsuksanoh N, Bi C, Yeh YC, Lee TS, Hillson N, Chhabra SR, Singer SW, Beller HR. Engineering of Ralstonia eutropha H16 for autotrophic and heterotrophic production of methyl ketones. Appl Environ Microbiol. 2013 Jul; 79(14):4433-9. PMID: 23686271; PMCID: PMC3697500.
    24. Yeh YC, Müller J, Bi C, Hillson N, Beller HR, Chhabra SR, Singer SW. Functionalizing bacterial cell surfaces with a phage protein. Chem Commun (Camb). 2013 Jan 30; 49(9):910-2. PMID: 23247551.
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    25. Linshiz G, Stawski N, Poust S, Bi C, Keasling JD, Hillson N. PaR-PaR laboratory automation platform. ACS Synth Biol. 2013 May 17; 2(5):216-22. PMID: 23654257.
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    26. Ham TS, Dmytriv Z, Plahar H, Chen J, Hillson N, Keasling JD. Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools. Nucleic Acids Res. 2012 Oct; 40(18):e141. PMID: 22718978; PMCID: PMC3467034.
    27. Chen J, Densmore D, Ham TS, Keasling JD, Hillson N. DeviceEditor visual biological CAD canvas. J Biol Eng. 2012 Feb 28; 6(1):1. PMID: 22373390; PMCID: PMC3317443.
    28. Linshiz G, Goldberg A, Konry T, Hillson N. The fusion of biology, computer science, and engineering: towards efficient and successful synthetic biology. Perspect Biol Med. 2012; 55(4):503-20. PMID: 23502561.
      View in: PubMed
    29. Hillson N, Rosengarten RD, Keasling JD. j5 DNA assembly design automation software. ACS Synth Biol. 2012 Jan 20; 1(1):14-21. PMID: 23651006.
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    30. Iniesta AA, Hillson N, Shapiro L. Polar remodeling and histidine kinase activation, which is essential for Caulobacter cell cycle progression, are dependent on DNA replication initiation. J Bacteriol. 2010 Aug; 192(15):3893-902. PMID: 20525830; PMCID: PMC2916389.
    31. Iniesta AA, Hillson N, Shapiro L. Cell pole-specific activation of a critical bacterial cell cycle kinase. Proc Natl Acad Sci U S A. 2010 Apr 13; 107(15):7012-7. PMID: 20351295; PMCID: PMC2872457.
    32. Christen B, Fero MJ, Hillson N, Bowman G, Hong SH, Shapiro L, McAdams HH. High-throughput identification of protein localization dependency networks. Proc Natl Acad Sci U S A. 2010 Mar 09; 107(10):4681-6. PMID: 20176934; PMCID: PMC2842071.
    33. Hillson N, Hu P, Andersen GL, Shapiro L. Caulobacter crescentus as a whole-cell uranium biosensor. Appl Environ Microbiol. 2007 Dec; 73(23):7615-21. PMID: 17905881; PMCID: PMC2168040.
    34. McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, Tan MH, Hillson N, Hu P, Shapiro L, McAdams HH. High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. Nat Biotechnol. 2007 May; 25(5):584-92. PMID: 17401361.
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    35. Hicks LM, Balibar CJ, Walsh CT, Kelleher NL, Hillson N. Probing intra- versus interchain kinetic preferences of L-Thr acylation on dimeric VibF with mass spectrometry. Biophys J. 2006 Oct 01; 91(7):2609-19. PMID: 16815901; PMCID: PMC1562378.
    36. Kelly WL, Hillson N, Walsh CT. Excision of the epothilone synthetase B cyclization domain and demonstration of in trans condensation/cyclodehydration activity. Biochemistry. 2005 Oct 11; 44(40):13385-93. PMID: 16201763.
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    37. Pacholec M, Hillson N, Walsh CT. NovJ/NovK catalyze benzylic oxidation of a beta-hydroxyl tyrosyl-S-pantetheinyl enzyme during aminocoumarin ring formation in novobiocin biosynthesis. Biochemistry. 2005 Sep 27; 44(38):12819-26. PMID: 16171397.
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    38. Hillson N, Balibar CJ, Walsh CT. Catalytically inactive condensation domain C1 is responsible for the dimerization of the VibF subunit of vibriobactin synthetase. Biochemistry. 2004 Sep 07; 43(35):11344-51. PMID: 15366944.
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    39. Hillson N, Walsh CT. Dimeric structure of the six-domain VibF subunit of vibriobactin synthetase: mutant domain activity regain and ultracentrifugation studies. Biochemistry. 2003 Jan 28; 42(3):766-75. PMID: 12534289.
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    40. Sieber SA, Linne U, Hillson N, Roche E, Walsh CT, Marahiel MA. Evidence for a monomeric structure of nonribosomal Peptide synthetases. Chem Biol. 2002 Sep; 9(9):997-1008. PMID: 12323374.
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    41. Miller DA, Luo L, Hillson N, Keating TA, Walsh CT. Yersiniabactin synthetase: a four-protein assembly line producing the nonribosomal peptide/polyketide hybrid siderophore of Yersinia pestis. Chem Biol. 2002 Mar; 9(3):333-44. PMID: 11927258.
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    42. Marshall CG, Hillson N, Walsh CT. Catalytic mapping of the vibriobactin biosynthetic enzyme VibF. Biochemistry. 2002 Jan 08; 41(1):244-50. PMID: 11772022.
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