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    Price, Morgan

    TitleCompl Biologist Res Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Rand JM, Pisithkul T, Clark RL, Thiede JM, Mehrer CR, Agnew DE, Campbell CE, Markley AL, Price M, Ray J, Wetmore KM, Suh Y, Arkin AP, Deutschbauer AM, Amador-Noguez D, Pfleger BF. A metabolic pathway for catabolizing levulinic acid in bacteria. Nat Microbiol. 2017 Dec; 2(12):1624-1634. PMID: 28947739.
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      2. Price M, Arkin AP. PaperBLAST: Text Mining Papers for Information about Homologs. mSystems. 2017 Jul-Aug; 2(4). PMID: 28845458.
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      3. Sagawa S, Price M, Deutschbauer AM, Arkin AP. Validating regulatory predictions from diverse bacteria with mutant fitness data. PLoS One. 2017; 12(5):e0178258. PMID: 28542589.
        View in: PubMed
      4. Price M, Wetmore KM, Deutschbauer AM, Arkin AP. A Comparison of the Costs and Benefits of Bacterial Gene Expression. PLoS One. 2016; 11(10):e0164314. PMID: 27711251.
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      5. Price M, Arkin AP. A Theoretical Lower Bound for Selection on the Expression Levels of Proteins. Genome Biol Evol. 2016 07 02; 8(6):1917-28. PMID: 27289091; PMCID: PMC4943197.
      6. Price M, Arkin AP. Weakly Deleterious Mutations and Low Rates of Recombination Limit the Impact of Natural Selection on Bacterial Genomes. MBio. 2015 Dec 15; 6(6):e01302-15. PMID: 26670382; PMCID: PMC4701828.
      7. Rubin BE, Wetmore KM, Price M, Diamond S, Shultzaberger RK, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proc Natl Acad Sci U S A. 2015 Dec 01; 112(48):E6634-43. PMID: 26508635; PMCID: PMC4672817.
      8. Vaccaro BJ, Thorgersen MP, Lancaster WA, Price M, Wetmore KM, Poole FL, Deutschbauer A, Arkin AP, Adams MW. Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses. Appl Environ Microbiol. 2015 Oct 09; 82(1):51-61. PMID: 26452555; PMCID: PMC4702625.
      9. Ray J, Waters RJ, Skerker JM, Kuehl JV, Price M, Huang J, Chakraborty R, Arkin AP, Deutschbauer A. Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site. Genome Announc. 2015 May 14; 3(3). PMID: 25977418; PMCID: PMC4432324.
      10. Wetmore KM, Price M, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. MBio. 2015 May 12; 6(3):e00306-15. PMID: 25968644; PMCID: PMC4436071.
      11. Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price M, Iavarone AT, Deutschbauer AM, Arkin AP, Coates JD. Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase. MBio. 2015 May 12; 6(3):e00233-15. PMID: 25968643; PMCID: PMC4436054.
      12. Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price M, Deutschbauer AM, Arkin AP, Coates JD. Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate. ISME J. 2015 Jun; 9(6):1295-305. PMID: 25405978; PMCID: PMC4438318.
      13. Price M, Ray J, Wetmore KM, Kuehl JV, Bauer S, Deutschbauer AM, Arkin AP. The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Front Microbiol. 2014; 5:577. PMID: 25400629; PMCID: PMC4215793.
      14. Deutschbauer A, Price M, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM. Towards an informative mutant phenotype for every bacterial gene. J Bacteriol. 2014 Oct; 196(20):3643-55. PMID: 25112473; PMCID: PMC4187699.
      15. Shao W, Price M, Deutschbauer AM, Romine MF, Arkin AP. Conservation of transcription start sites within genes across a bacterial genus. MBio. 2014 Jul 01; 5(4):e01398-14. PMID: 24987095; PMCID: PMC4161247.
      16. Kuehl JV, Price M, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A. Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20. MBio. 2014 May 27; 5(3):e01041-14. PMID: 24865553; PMCID: PMC4045070.
      17. Korte HL, Fels SR, Christensen GA, Price M, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD. Genetic basis for nitrate resistance in Desulfovibrio strains. Front Microbiol. 2014; 5:153. PMID: 24795702; PMCID: PMC4001038.
      18. Meyer B, Kuehl JV, Price M, Ray J, Deutschbauer AM, Arkin AP, Stahl DA. The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf. Environ Microbiol. 2014 Nov; 16(11):3463-86. PMID: 24447568.
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      19. Novichkov PS, Li X, Kuehl JV, Deutschbauer AM, Arkin AP, Price M, Rodionov DA. Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria. Environ Microbiol. 2014 Jan; 16(1):1-8. PMID: 24118949.
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      20. Skerker JM, Leon D, Price M, Mar JS, Tarjan DR, Wetmore KM, Deutschbauer AM, Baumohl JK, Bauer S, Ibáñez AB, Mitchell VD, Wu CH, Hu P, Hazen T, Arkin AP. Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates. Mol Syst Biol. 2013 Jun 18; 9:674. PMID: 23774757; PMCID: PMC3964314.
      21. Price M, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP. Indirect and suboptimal control of gene expression is widespread in bacteria. Mol Syst Biol. 2013 Apr 16; 9:660. PMID: 23591776; PMCID: PMC3658271.
      22. Meyer B, Kuehl J, Deutschbauer AM, Price M, Arkin AP, Stahl DA. Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth. J Bacteriol. 2013 Mar; 195(5):990-1004. PMID: 23264581; PMCID: PMC3571329.
      23. Baran R, Bowen BP, Price M, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. ACS Chem Biol. 2013 Jan 18; 8(1):189-99. PMID: 23082955.
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      24. Kazakov AE, Rodionov DA, Price M, Arkin AP, Dubchak I, Novichkov PS. Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes. J Bacteriol. 2013 Jan; 195(1):29-38. PMID: 23086211; PMCID: PMC3536172.
      25. McDonald D, Price M, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012 Mar; 6(3):610-8. PMID: 22134646; PMCID: PMC3280142.
      26. Deutschbauer A, Price M, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. PLoS Genet. 2011 Nov; 7(11):e1002385. PMID: 22125499; PMCID: PMC3219624.
      27. Rajeev L, Luning EG, Dehal PS, Price M, Arkin AP, Mukhopadhyay A. Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium. Genome Biol. 2011 Oct 12; 12(10):R99. PMID: 21992415; PMCID: PMC3333781.
      28. Chhabra SR, Butland G, Elias DA, Chandonia JM, Fok OY, Juba TR, Gorur A, Allen S, Leung CM, Keller KL, Reveco S, Zane GM, Semkiw E, Prathapam R, Gold B, Singer M, Ouellet M, Szakal ED, Jorgens D, Price M, Witkowska HE, Beller HR, Arkin AP, Hazen TC, Biggin MD, Auer M, Wall JD, Keasling JD. Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome. Appl Environ Microbiol. 2011 Nov; 77(21):7595-604. PMID: 21908633; PMCID: PMC3209177.
      29. Price M, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP. Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J Bacteriol. 2011 Oct; 193(20):5716-27. PMID: 21840973; PMCID: PMC3187205.
      30. Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price M, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, Singh AK, Keasling JD. Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough. PLoS One. 2011; 6(6):e21470. PMID: 21738675; PMCID: PMC3125180.
      31. Hauser LJ, Land ML, Brown SD, Larimer F, Keller KL, Rapp-Giles BJ, Price M, Lin M, Bruce DC, Detter JC, Tapia R, Han CS, Goodwin LA, Cheng JF, Pitluck S, Copeland A, Lucas S, Nolan M, Lapidus AL, Palumbo AV, Wall JD. Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20. J Bacteriol. 2011 Aug; 193(16):4268-9. PMID: 21685289; PMCID: PMC3147700.
      32. Oh J, Fung E, Price M, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Res. 2010 Aug; 38(14):e146. PMID: 20494978; PMCID: PMC2919733.
      33. He Q, He Z, Joyner DC, Joachimiak M, Price M, Yang ZK, Yen HC, Hemme CL, Chen W, Fields MM, Stahl DA, Keasling JD, Keller M, Arkin AP, Hazen TC, Wall JD, Zhou J. Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris. ISME J. 2010 Nov; 4(11):1386-97. PMID: 20445634.
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      34. Price M, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One. 2010 Mar 10; 5(3):e9490. PMID: 20224823; PMCID: PMC2835736.
      35. Dehal PS, Joachimiak MP, Price M, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 2010 Jan; 38(Database issue):D396-400. PMID: 19906701; PMCID: PMC2808868.
      36. Price M, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009 Jul; 26(7):1641-50. PMID: 19377059; PMCID: PMC2693737.
      37. Price M, Dehal PS, Arkin AP. FastBLAST: homology relationships for millions of proteins. PLoS One. 2008; 3(10):e3589. PMID: 18974889; PMCID: PMC2571987.
      38. Price M, Dehal PS, Arkin AP. Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol. 2008 Jan 07; 9(1):R4. PMID: 18179685.
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      39. Price M, Dehal PS, Arkin AP. Orthologous transcription factors in bacteria have different functions and regulate different genes. PLoS Comput Biol. 2007 Sep; 3(9):1739-50. PMID: 17845071; PMCID: PMC1971122.
      40. Price M, Arkin AP, Alm EJ. The life-cycle of operons. PLoS Genet. 2006 Jun; 2(6):e96. PMID: 16789824; PMCID: PMC1480536.
      41. Price M, Alm EJ, Arkin AP. The histidine operon is ancient. J Mol Evol. 2006 Jun; 62(6):807-8. PMID: 16612542.
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      42. Price M, Arkin AP, Alm EJ. OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments. BMC Bioinformatics. 2006 Jan 13; 7:19. PMID: 16412220; PMCID: PMC1397872.
      43. Alm EJ, Huang KH, Price M, Koche RP, Keller K, Dubchak IL, Arkin AP. The MicrobesOnline Web site for comparative genomics. Genome Res. 2005 Jul; 15(7):1015-22. PMID: 15998914; PMCID: PMC1172046.
      44. Price M, Alm EJ, Arkin AP. Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication. Nucleic Acids Res. 2005; 33(10):3224-34. PMID: 15942025; PMCID: PMC1143696.
      45. Price M, Huang KH, Arkin AP, Alm EJ. Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res. 2005 Jun; 15(6):809-19. PMID: 15930492; PMCID: PMC1142471.
      46. Price M, Huang KH, Alm EJ, Arkin AP. A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Res. 2005; 33(3):880-92. PMID: 15701760; PMCID: PMC549399.
      47. Price M, Rieffel E. Finding coexpressed genes in counts-based data: an improved measure with validation experiments. Bioinformatics. 2004 Apr 12; 20(6):945-52. PMID: 14751974.
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