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Hammond, Ming

TitleChemist Faculty Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/642-0509
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    Collapse Research 
    Collapse Research Activities and Funding
    Enabling High-Throughput Analysis and Single-Cell Imaging of Bacterial Signals
    NIH/NIGMS R01GM124589Sep 1, 2017 - Jul 31, 2021
    Role: Principal Investigator
    A Chemical Biology Approach to Tagging RNAs in Live Cells
    NIH DP2OD008677Sep 30, 2011 - Jun 30, 2016
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Dippel AB, Anderson WA, Evans RS, Deutsch S, Hammond M. Chemiluminescent Biosensors for Detection of Second Messenger Cyclic di-GMP. ACS Chem Biol. 2018 Mar 05. PMID: 29466657.
      View in: PubMed
    2. Truong J, Hsieh YF, Truong L, Jia G, Hammond M. Designing fluorescent biosensors using circular permutations of riboswitches. Methods. 2018 Feb 16. PMID: 29458090.
      View in: PubMed
    3. Yeo J, Dippel AB, Wang XC, Hammond M. In Vivo Biochemistry: Single-Cell Dynamics of Cyclic Di-GMP in Escherichia coli in Response to Zinc Overload. Biochemistry. 2018 01 09; 57(1):108-116. PMID: 29052983.
      View in: PubMed
    4. Hallberg ZF, Su Y, Kitto RZ, Hammond M. Engineering and In Vivo Applications of Riboswitches. Annu Rev Biochem. 2017 Jun 20; 86:515-539. PMID: 28375743.
      View in: PubMed
    5. Yeo J, Wang XC, Hammond M. Live Flow Cytometry Analysis of c-di-GMP Levels in Single Cell Populations. Methods Mol Biol. 2017; 1657:111-130. PMID: 28889290.
      View in: PubMed
    6. Bose D, Su Y, Marcus A, Raulet DH, Hammond M. An RNA-Based Fluorescent Biosensor for High-Throughput Analysis of the cGAS-cGAMP-STING Pathway. Cell Chem Biol. 2016 Dec 22; 23(12):1539-1549. PMID: 27889408.
      View in: PubMed
    7. Wang XC, Wilson SC, Hammond M. Next-generation RNA-based fluorescent biosensors enable anaerobic detection of cyclic di-GMP. Nucleic Acids Res. 2016 09 30; 44(17):e139. PMID: 27382070.
      View in: PubMed
    8. Su Y, Hickey SF, Keyser SG, Hammond M. In Vitro and In Vivo Enzyme Activity Screening via RNA-Based Fluorescent Biosensors for S-Adenosyl-l-homocysteine (SAH). J Am Chem Soc. 2016 06 08; 138(22):7040-7. PMID: 27191512.
      View in: PubMed
    9. Hallberg ZF, Wang XC, Wright TA, Nan B, Ad O, Yeo J, Hammond M. Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3', 3'-cGAMP). Proc Natl Acad Sci U S A. 2016 Feb 16; 113(7):1790-5. PMID: 26839412; PMCID: PMC4763787.
    10. Muller RY, Hammond M, Rio DC, Lee YJ. An Efficient Method for Electroporation of Small Interfering RNAs into ENCODE Project Tier 1 GM12878 and K562 Cell Lines. J Biomol Tech. 2015 Dec; 26(4):142-9. PMID: 26543439; PMCID: PMC4627513.
    11. Gonzalez TL, Liang Y, Nguyen BN, Staskawicz BJ, Loqué D, Hammond M. Tight regulation of plant immune responses by combining promoter and suicide exon elements. Nucleic Acids Res. 2015 Aug 18; 43(14):7152-61. PMID: 26138488; PMCID: PMC4538838.
    12. Kellenberger CA, Sales-Lee J, Pan Y, Gassaway MM, Herr AE, Hammond M. A minimalist biosensor: Quantitation of cyclic di-GMP using the conformational change of a riboswitch aptamer. RNA Biol. 2015; 12(11):1189-97. PMID: 26114964; PMCID: PMC4829349.
    13. Kellenberger CA, Chen C, Whiteley AT, Portnoy DA, Hammond M. RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP. J Am Chem Soc. 2015 May 27; 137(20):6432-5. PMID: 25965978; PMCID: PMC4521591.
    14. Kellenberger CA, Wilson SC, Hickey SF, Gonzalez TL, Su Y, Hallberg ZF, Brewer TF, Iavarone AT, Carlson HK, Hsieh YF, Hammond M. GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP. Proc Natl Acad Sci U S A. 2015 Apr 28; 112(17):5383-8. PMID: 25848022; PMCID: PMC4418906.
    15. Ren A, Wang XC, Kellenberger CA, Rajashankar KR, Jones RA, Hammond M, Patel DJ. Structural basis for molecular discrimination by a 3',3'-cGAMP sensing riboswitch. Cell Rep. 2015 Apr 07; 11(1):1-12. PMID: 25818298; PMCID: PMC4732562.
    16. Kellenberger CA, Hallberg ZF, Hammond M. Live Cell Imaging Using Riboswitch-Spinach tRNA Fusions as Metabolite-Sensing Fluorescent Biosensors. Methods Mol Biol. 2015; 1316:87-103. PMID: 25967055.
      View in: PubMed
    17. Kellenberger CA, Hammond M. In vitro analysis of riboswitch-Spinach aptamer fusions as metabolite-sensing fluorescent biosensors. Methods Enzymol. 2015; 550:147-72. PMID: 25605385.
      View in: PubMed
    18. Pan Y, Duncombe TA, Kellenberger CA, Hammond M, Herr AE. High-throughput electrophoretic mobility shift assays for quantitative analysis of molecular binding reactions. Anal Chem. 2014 Oct 21; 86(20):10357-64. PMID: 25233437; PMCID: PMC4204909.
    19. Wilson SC, Cohen DT, Wang XC, Hammond M. A neutral pH thermal hydrolysis method for quantification of structured RNAs. RNA. 2014 Jul; 20(7):1153-60. PMID: 24860014; PMCID: PMC4114692.
    20. Hickey SF, Hammond M. Structure-guided design of fluorescent S-adenosylmethionine analogs for a high-throughput screen to target SAM-I riboswitch RNAs. Chem Biol. 2014 Mar 20; 21(3):345-56. PMID: 24560607; PMCID: PMC4074398.
    21. Sadhu MJ, Guan Q, Li F, Sales-Lee J, Iavarone AT, Hammond M, Cande WZ, Rine J. Nutritional control of epigenetic processes in yeast and human cells. Genetics. 2013 Nov; 195(3):831-44. PMID: 23979574; PMCID: PMC3813867.
    22. Diner EJ, Burdette DL, Wilson SC, Monroe KM, Kellenberger CA, Hyodo M, Hayakawa Y, Hammond M, Vance RE. The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING. Cell Rep. 2013 May 30; 3(5):1355-61. PMID: 23707065; PMCID: PMC3706192.
    23. Leppek K, Schott J, Reitter S, Poetz F, Hammond M, Stoecklin G. Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs. Cell. 2013 May 09; 153(4):869-81. PMID: 23663784.
      View in: PubMed
    24. Kellenberger CA, Wilson SC, Sales-Lee J, Hammond M. RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. J Am Chem Soc. 2013 Apr 03; 135(13):4906-9. PMID: 23488798; PMCID: PMC3775879.
    25. Karns K, Vogan JM, Qin Q, Hickey SF, Wilson SC, Hammond M, Herr AE. Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function. J Am Chem Soc. 2013 Feb 27; 135(8):3136-43. PMID: 23343213; PMCID: PMC3644558.
    26. Hickey SF, Sridhar M, Westermann AJ, Qin Q, Vijayendra P, Liou G, Hammond M. Transgene regulation in plants by alternative splicing of a suicide exon. Nucleic Acids Res. 2012 May; 40(10):4701-10. PMID: 22311854; PMCID: PMC3378873.
    27. Hammond M. RNA folding: a tale of two riboswitches. Nat Chem Biol. 2011 Jun; 7(6):342-3. PMID: 21587253.
      View in: PubMed
    28. Meyer MM, Hammond M, Salinas Y, Roth A, Sudarsan N, Breaker RR. Challenges of ligand identification for riboswitch candidates. RNA Biol. 2011 Jan-Feb; 8(1):5-10. PMID: 21317561; PMCID: PMC3142362.
    29. Block KF, Hammond M, Breaker RR. Evidence for widespread gene control function by the ydaO riboswitch candidate. J Bacteriol. 2010 Aug; 192(15):3983-9. PMID: 20511502; PMCID: PMC2916388.
    30. Hammond M, Wachter A, Breaker RR. A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs. Nat Struct Mol Biol. 2009 May; 16(5):541-9. PMID: 19377483; PMCID: PMC2680232.
    31. Weinberg Z, Regulski EE, Hammond M, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches. RNA. 2008 May; 14(5):822-8. PMID: 18369181; PMCID: PMC2327355.
    32. Hammond M, Bartlett PA. Synthesis of amino acid-derived cyclic acyl amidines for use in beta-strand peptidomimetics. J Org Chem. 2007 Apr 13; 72(8):3104-7. PMID: 17371075; PMCID: PMC2536638.
    33. Hammond M, Harris BZ, Lim WA, Bartlett PA. Beta strand peptidomimetics as potent PDZ domain ligands. Chem Biol. 2006 Dec; 13(12):1247-51. PMID: 17185220.
      View in: PubMed
    34. Sudarsan N, Hammond M, Block KF, Welz R, Barrick JE, Roth A, Breaker RR. Tandem riboswitch architectures exhibit complex gene control functions. Science. 2006 Oct 13; 314(5797):300-4. PMID: 17038623.
      View in: PubMed
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