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Francis, Matthew

TitleChemist Faculty
InstitutionLawrence Berkeley National Lab
DepartmentMaterials Sciences
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/643-9915
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    Collapse Research 
    Collapse Research Activities and Funding
    Targeted Imaging Agents Based on Synthetically Modified Viral Capsids
    NIH/NIBIB R21EB018055Sep 30, 2014 - Jun 30, 2016
    Role: Principal Investigator
    The development of a microscopy-based cell-array toxicity assay for quantifying C
    NIH/NCI R33CA174616Sep 23, 2013 - Aug 31, 2015
    Role: Co-Principal Investigator
    New Synthetic Strategies for Protein Engineering
    NIH/NIGMS R01GM072700Mar 1, 2005 - Feb 28, 2011
    Role: Principal Investigator
    University of California Berkeley Chemistry-Biology Interface Training Program
    NIH/NIGMS T32GM066698Jul 1, 2004 - Jun 30, 2019
    Role: Co-Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Furst AL, Smith MJ, Francis M. New Techniques for the Generation and Analysis of Tailored Microbial Systems on Surfaces. Biochemistry. 2018 May 17. PMID: 29771497.
      View in: PubMed
    2. Delor M, Dai J, Roberts TD, Rogers JR, Hamed SM, Neaton JB, Geissler PL, Francis M, Ginsberg NS. Exploiting Chromophore-Protein Interactions through Linker Engineering To Tune Photoinduced Dynamics in a Biomimetic Light-Harvesting Platform. J Am Chem Soc. 2018 May 09. PMID: 29741876.
      View in: PubMed
    3. Hartman EC, Jakobson CM, Favor AH, Lobba MJ, Álvarez-Benedicto E, Francis M, Tullman-Ercek D. Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle. Nat Commun. 2018 Apr 11; 9(1):1385. PMID: 29643335.
      View in: PubMed
    4. Lei R, Lee JP, Francis M, Kumar S. Structural Regulation of a Neurofilament-Inspired Intrinsically Disordered Protein Brush by Multisite Phosphorylation. Biochemistry. 2018 Apr 06. PMID: 29557644.
      View in: PubMed
    5. Smith MJ, Francis M. Methods for Generating Microbial Cocultures that Grow in the Absence of Fixed Carbon or Nitrogen. Methods Mol Biol. 2018; 1772:45-60. PMID: 29754222.
      View in: PubMed
    6. Aanei IL, Francis M. Dual Surface Modification of Genome-Free MS2 Capsids for Delivery Applications. Methods Mol Biol. 2018; 1776:629-642. PMID: 29869270.
      View in: PubMed
    7. ElSohly AM, Netirojjanakul C, Francis M. Antibody Modification of p-Aminophenylalanine-Containing Proteins. Methods Mol Biol. 2018; 1798:195-201. PMID: 29868961.
      View in: PubMed
    8. Aanei IL, Glasgow JE, Capehart SL, Francis M. Encapsulation of Negatively Charged Cargo in MS2 Viral Capsids. Methods Mol Biol. 2018; 1776:303-317. PMID: 29869251.
      View in: PubMed
    9. Furst AL, Smith MJ, Francis M. Direct Electrochemical Bioconjugation on Metal Surfaces. J Am Chem Soc. 2017 Sep 13; 139(36):12610-12616. PMID: 28858482.
      View in: PubMed
    10. Finbloom JA, Han K, Slack CC, Furst AL, Francis M. Cucurbit[6]uril-Promoted Click Chemistry for Protein Modification. J Am Chem Soc. 2017 Jul 19; 139(28):9691-9697. PMID: 28650616.
      View in: PubMed
    11. Rosen CB, Francis M. Targeting the N terminus for site-selective protein modification. Nat Chem Biol. 2017 Jul; 13(7):697-705. PMID: 28632705.
      View in: PubMed
    12. Knight AS, Kulkarni RU, Zhou EY, Franke JM, Miller EW, Francis M. A modular platform to develop peptoid-based selective fluorescent metal sensors. Chem Commun (Camb). 2017 Mar 25; 53(24):3477-3480. PMID: 28272633.
      View in: PubMed
    13. ElSohly AM, MacDonald JI, Hentzen NB, Aanei IL, El Muslemany KM, Francis M. ortho-Methoxyphenols as Convenient Oxidative Bioconjugation Reagents with Application to Site-Selective Heterobifunctional Cross-Linkers. J Am Chem Soc. 2017 03 15; 139(10):3767-3773. PMID: 28207247.
      View in: PubMed
    14. Smith MJ, Francis M. Improving metabolite production in microbial co-cultures using a spatially constrained hydrogel. Biotechnol Bioeng. 2017 06; 114(6):1195-1200. PMID: 27943258.
      View in: PubMed
    15. Palla KS, Hurlburt TJ, Buyanin AM, Somorjai GA, Francis M. Site-Selective Oxidative Coupling Reactions for the Attachment of Enzymes to Glass Surfaces through DNA-Directed Immobilization. J Am Chem Soc. 2017 02 08; 139(5):1967-1974. PMID: 28001056.
      View in: PubMed
    16. Slack CC, Finbloom JA, Jeong K, Bruns CJ, Wemmer DE, Pines A, Francis M. Rotaxane probes for protease detection by 129Xe hyperCEST NMR. Chem Commun (Camb). 2017 Jan 17; 53(6):1076-1079. PMID: 28044166.
      View in: PubMed
    17. Furst AL, Hoepker AC, Francis M. Quantifying Hormone Disruptors with an Engineered Bacterial Biosensor. ACS Cent Sci. 2017 Feb 22; 3(2):110-116. PMID: 28280777.
      View in: PubMed
    18. Bruns CJ, Liu H, Francis M. Near-Quantitative Aqueous Synthesis of Rotaxanes via Bioconjugation to Oligopeptides and Proteins. J Am Chem Soc. 2016 11 30; 138(47):15307-15310. PMID: 27933926.
      View in: PubMed
    19. Finbloom JA, Han K, Aanei IL, Hartman EC, Finley DT, Dedeo MT, Fishman M, Downing KH, Francis M. Stable Disk Assemblies of a Tobacco Mosaic Virus Mutant as Nanoscale Scaffolds for Applications in Drug Delivery. Bioconjug Chem. 2016 Oct 07. PMID: 27712069.
      View in: PubMed
    20. Aanei IL, ElSohly AM, Farkas ME, Netirojjanakul C, Regan M, Taylor Murphy S, O'Neil JP, Seo Y, Francis M. Biodistribution of Antibody-MS2 Viral Capsid Conjugates in Breast Cancer Models. Mol Pharm. 2016 11 07; 13(11):3764-3772. PMID: 27611245.
      View in: PubMed
    21. Jeong K, Netirojjanakul C, Munch HK, Sun J, Finbloom JA, Wemmer DE, Pines A, Francis M. Targeted Molecular Imaging of Cancer Cells Using MS2-Based (129)Xe NMR. Bioconjug Chem. 2016 08 17; 27(8):1796-801. PMID: 27454679.
      View in: PubMed
    22. Gomes MD, Dao P, Jeong K, Slack CC, Vassiliou CC, Finbloom JA, Francis M, Wemmer DE, Pines A. (129)Xe NMR Relaxation-Based Macromolecular Sensing. J Am Chem Soc. 2016 08 10; 138(31):9747-50. PMID: 27472048.
      View in: PubMed
    23. Sangsuwan R, Obermeyer AC, Tachachartvanich P, Palaniappan KK, Francis M. Direct detection of nitrotyrosine-containing proteins using an aniline-based oxidative coupling strategy. Chem Commun (Camb). 2016 Aug 21; 52(65):10036-9. PMID: 27447346; PMCID: PMC5001876 [Available on 08/21/17].
    24. Lee JP, Kassianidou E, MacDonald JI, Francis M, Kumar S. N-terminal specific conjugation of extracellular matrix proteins to 2-pyridinecarboxaldehyde functionalized polyacrylamide hydrogels. Biomaterials. 2016 09; 102:268-76. PMID: 27348850; PMCID: PMC4939314 [Available on 09/01/17].
    25. Smith MJ, Francis M. A Designed A. vinelandii-S. elongatus Coculture for Chemical Photoproduction from Air, Water, Phosphate, and Trace Metals. ACS Synth Biol. 2016 09 16; 5(9):955-61. PMID: 27232890.
      View in: PubMed
    26. Rosen CB, Kwant RL, MacDonald JI, Rao M, Francis M. Capture and Recycling of Sortase A through Site-Specific Labeling with Lithocholic Acid. Angew Chem Int Ed Engl. 2016 Jul 18; 55(30):8585-9. PMID: 27239057.
      View in: PubMed
    27. Finbloom JA, Slack CC, Bruns CJ, Jeong K, Wemmer DE, Pines A, Francis M. Rotaxane-mediated suppression and activation of cucurbit[6]uril for molecular detection by (129)Xe hyperCEST NMR. Chem Commun (Camb). 2016 Feb 21; 52(15):3119-22. PMID: 26795714.
      View in: PubMed
    28. Carrico ZM, Strobel KL, Atreya ME, Clark DS, Francis M. Simultaneous selection and counter-selection for the directed evolution of proteases in E. coli using a cytoplasmic anchoring strategy. Biotechnol Bioeng. 2016 06; 113(6):1187-93. PMID: 26666461.
      View in: PubMed
    29. Jeong K, Slack CC, Vassiliou CC, Dao P, Gomes MD, Kennedy DJ, Truxal AE, Sperling LJ, Francis M, Wemmer DE, Pines A. Investigation of DOTA-Metal Chelation Effects on the Chemical Shift of (129) Xe. Chemphyschem. 2015 Dec 01; 16(17):3573-7. PMID: 26376768.
      View in: PubMed
    30. ElSohly AM, Netirojjanakul C, Aanei IL, Jager A, Bendall SC, Farkas ME, Nolan GP, Francis M. Synthetically Modified Viral Capsids as Versatile Carriers for Use in Antibody-Based Cell Targeting. Bioconjug Chem. 2015 Aug 19; 26(8):1590-6. PMID: 26076186; PMCID: PMC4758138.
    31. ElSohly AM, Francis M. Development of oxidative coupling strategies for site-selective protein modification. Acc Chem Res. 2015 Jul 21; 48(7):1971-8. PMID: 26057118.
      View in: PubMed
    32. Noriega R, Finley DT, Haberstroh J, Geissler PL, Francis M, Ginsberg NS. Manipulating Excited-State Dynamics of Individual Light-Harvesting Chromophores through Restricted Motions in a Hydrated Nanoscale Protein Cavity. J Phys Chem B. 2015 Jun 11; 119(23):6963-73. PMID: 26035585.
      View in: PubMed
    33. Knight AS, Zhou EY, Francis M. Development of Peptoid-Based Ligands for the Removal of Cadmium from Biological Media. Chem Sci. 2015 Jul 01; 7(6):4042-4048. PMID: 26918113.
      View in: PubMed
    34. Glasgow JE, Asensio MA, Jakobson CM, Francis M, Tullman-Ercek D. Influence of Electrostatics on Small Molecule Flux through a Protein Nanoreactor. ACS Synth Biol. 2015 Sep 18; 4(9):1011-9. PMID: 25893987.
      View in: PubMed
    35. Knight AS, Zhou EY, Francis M, Zuckermann RN. Sequence Programmable Peptoid Polymers for Diverse Materials Applications. Adv Mater. 2015 Oct 14; 27(38):5665-91. PMID: 25855478.
      View in: PubMed
    36. MacDonald JI, Munch HK, Moore T, Francis M. One-step site-specific modification of native proteins with 2-pyridinecarboxyaldehydes. Nat Chem Biol. 2015 May; 11(5):326-31. PMID: 25822913.
      View in: PubMed
    37. Kwant RL, Jaffe J, Palmere PJ, Francis M. Controlled levels of protein modification through a chromatography-mediated bioconjugation. Chem Sci. 2015 Apr 16; 6(4):2596-2601. PMID: 28706661.
      View in: PubMed
    38. Palla KS, Witus LS, Mackenzie KJ, Netirojjanakul C, Francis M. Optimization and expansion of a site-selective N-methylpyridinium-4-carboxaldehyde-mediated transamination for bacterially expressed proteins. J Am Chem Soc. 2015 Jan 28; 137(3):1123-9. PMID: 25486267.
      View in: PubMed
    39. Bernard JM, Francis M. Chemical strategies for the covalent modification of filamentous phage. Front Microbiol. 2014; 5:734. PMID: 25566240; PMCID: PMC4274979.
    40. Capehart SL, ElSohly AM, Obermeyer AC, Francis M. Bioconjugation of gold nanoparticles through the oxidative coupling of ortho-aminophenols and anilines. Bioconjug Chem. 2014 Oct 15; 25(10):1888-92. PMID: 25275488.
      View in: PubMed
    41. El Muslemany KM, Twite AA, ElSohly AM, Obermeyer AC, Mathies RA, Francis M. Photoactivated bioconjugation between ortho-azidophenols and anilines: a facile approach to biomolecular photopatterning. J Am Chem Soc. 2014 Sep 10; 136(36):12600-6. PMID: 25171554.
      View in: PubMed
    42. Wang D, Capehart SL, Pal S, Liu M, Zhang L, Schuck PJ, Liu Y, Yan H, Francis M, De Yoreo JJ. Hierarchical assembly of plasmonic nanostructures using virus capsid scaffolds on DNA origami templates. ACS Nano. 2014 Aug 26; 8(8):7896-904. PMID: 25020109.
      View in: PubMed
    43. Mackenzie KJ, Francis M. Effects of NIPAm polymer additives on the enzymatic hydrolysis of Avicel and pretreated Miscanthus. Biotechnol Bioeng. 2014 Sep; 111(9):1792-800. PMID: 24729018.
      View in: PubMed
    44. Obermeyer AC, Jarman JB, Francis M. N-terminal modification of proteins with o-aminophenols. J Am Chem Soc. 2014 Jul 09; 136(27):9572-9. PMID: 24963951; PMCID: PMC4353012.
    45. Obermeyer AC, Capehart SL, Jarman JB, Francis M. Multivalent viral capsids with internal cargo for fibrin imaging. PLoS One. 2014; 9(6):e100678. PMID: 24960118; PMCID: PMC4069081.
    46. Garimella PD, Meldrum T, Witus LS, Smith M, Bajaj VS, Wemmer DE, Francis M, Pines A. Hyperpolarized xenon-based molecular sensors for label-free detection of analytes. J Am Chem Soc. 2014 Jan 08; 136(1):164-8. PMID: 24313335.
      View in: PubMed
    47. Obermeyer AC, Jarman JB, Netirojjanakul C, El Muslemany K, Francis M. Mild bioconjugation through the oxidative coupling of ortho-aminophenols and anilines with ferricyanide. Angew Chem Int Ed Engl. 2014 Jan 20; 53(4):1057-61. PMID: 24311449.
      View in: PubMed
    48. Knight AS, Zhou EY, Pelton JG, Francis M. Selective chromium(VI) ligands identified using combinatorial peptoid libraries. J Am Chem Soc. 2013 Nov 20; 135(46):17488-93. PMID: 24195610; PMCID: PMC4136388.
    49. Witus LS, Netirojjanakul C, Palla KS, Muehl EM, Weng CH, Iavarone AT, Francis M. Site-specific protein transamination using N-methylpyridinium-4-carboxaldehyde. J Am Chem Soc. 2013 Nov 13; 135(45):17223-9. PMID: 24191658; PMCID: PMC4136391.
    50. Sack JT, Stephanopoulos N, Austin DC, Francis M, Trimmer JS. Antibody-guided photoablation of voltage-gated potassium currents. J Gen Physiol. 2013 Sep; 142(3):315-24. PMID: 23940262; PMCID: PMC3753605.
    51. Hsiao SC, Liu H, Holstlaw TA, Liu C, Francis CY, Francis M. Real time assays for quantifying cytotoxicity with single cell resolution. PLoS One. 2013; 8(6):e66739. PMID: 23826123; PMCID: PMC3691166.
    52. Palaniappan KK, Ramirez RM, Bajaj VS, Wemmer DE, Pines A, Francis M. Molecular imaging of cancer cells using a bacteriophage-based 129Xe NMR biosensor. Angew Chem Int Ed Engl. 2013 Apr 26; 52(18):4849-53. PMID: 23554263.
      View in: PubMed
    53. Coyle MP, Xu Q, Chiang S, Francis M, Groves JT. DNA-mediated assembly of protein heterodimers on membrane surfaces. J Am Chem Soc. 2013 Apr 03; 135(13):5012-6. PMID: 23530555; PMCID: PMC3626235.
    54. Capehart SL, Coyle MP, Glasgow JE, Francis M. Controlled integration of gold nanoparticles and organic fluorophores using synthetically modified MS2 viral capsids. J Am Chem Soc. 2013 Feb 27; 135(8):3011-6. PMID: 23402352; PMCID: PMC3625702.
    55. Mackenzie KJ, Francis M. Recyclable thermoresponsive polymer-cellulase bioconjugates for biomass depolymerization. J Am Chem Soc. 2013 Jan 09; 135(1):293-300. PMID: 23270527; PMCID: PMC3593141.
    56. Farkas ME, Aanei IL, Behrens CR, Tong GJ, Murphy ST, O'Neil JP, Francis M. PET Imaging and biodistribution of chemically modified bacteriophage MS2. Mol Pharm. 2013 Jan 07; 10(1):69-76. PMID: 23214968.
      View in: PubMed
    57. Glasgow JE, Capehart SL, Francis M, Tullman-Ercek D. Osmolyte-mediated encapsulation of proteins inside MS2 viral capsids. ACS Nano. 2012 Oct 23; 6(10):8658-64. PMID: 22953696; PMCID: PMC3479312.
    58. Carrico ZM, Farkas ME, Zhou Y, Hsiao SC, Marks JD, Chokhawala H, Clark DS, Francis M. N-Terminal labeling of filamentous phage to create cancer marker imaging agents. ACS Nano. 2012 Aug 28; 6(8):6675-80. PMID: 22830952; PMCID: PMC3435507.
    59. Stevens TK, Palaniappan KK, Ramirez RM, Francis M, Wemmer DE, Pines A. HyperCEST detection of a 129Xe-based contrast agent composed of cryptophane-A molecular cages on a bacteriophage scaffold. Magn Reson Med. 2013 May; 69(5):1245-52. PMID: 22791581.
      View in: PubMed
    60. Onoe H, Hsiao SC, Douglas ES, Gartner ZJ, Bertozzi CR, Francis M, Mathies RA. Cellular microfabrication: observing intercellular interactions using lithographically-defined DNA capture sequences. Langmuir. 2012 May 29; 28(21):8120-6. PMID: 22512362.
      View in: PubMed
    61. Twite AA, Hsiao SC, Onoe H, Mathies RA, Francis M. Direct attachment of microbial organisms to material surfaces through sequence-specific DNA hybridization. Adv Mater. 2012 May 08; 24(18):2380-5. PMID: 22431245.
      View in: PubMed
    62. Stephanopoulos N, Francis M. Choosing an effective protein bioconjugation strategy. Nat Chem Biol. 2011 Nov 15; 7(12):876-84. PMID: 22086289.
      View in: PubMed
    63. Seim KL, Obermeyer AC, Francis M. Oxidative modification of native protein residues using cerium(IV) ammonium nitrate. J Am Chem Soc. 2011 Oct 26; 133(42):16970-6. PMID: 21967510; PMCID: PMC3381880.
    64. Behrens CR, Hooker JM, Obermeyer AC, Romanini DW, Katz EM, Francis M. Rapid chemoselective bioconjugation through oxidative coupling of anilines and aminophenols. J Am Chem Soc. 2011 Oct 19; 133(41):16398-401. PMID: 21919497; PMCID: PMC3389565.
    65. Garimella PD, Datta A, Romanini DW, Raymond KN, Francis M. Multivalent, high-relaxivity MRI contrast agents using rigid cysteine-reactive gadolinium complexes. J Am Chem Soc. 2011 Sep 21; 133(37):14704-9. PMID: 21800868; PMCID: PMC3188312.
    66. Witus LS, Francis M. Using synthetically modified proteins to make new materials. Acc Chem Res. 2011 Sep 20; 44(9):774-83. PMID: 21812400; PMCID: PMC3177999.
    67. Dedeo MT, Finley DT, Francis M. Viral capsids as self-assembling templates for new materials. Prog Mol Biol Transl Sci. 2011; 103:353-92. PMID: 22000000.
      View in: PubMed
    68. Francis M, Carrico IS. New frontiers in protein bioconjugation. Curr Opin Chem Biol. 2010 Dec; 14(6):771-3. PMID: 21112236.
      View in: PubMed
    69. Witus LS, Moore T, Thuronyi BW, Esser-Kahn AP, Scheck RA, Iavarone AT, Francis M. Identification of highly reactive sequences for PLP-mediated bioconjugation using a combinatorial peptide library. J Am Chem Soc. 2010 Dec 01; 132(47):16812-7. PMID: 21067189; PMCID: PMC2997844.
    70. Stephanopoulos N, Tong GJ, Hsiao SC, Francis M. Dual-surface modified virus capsids for targeted delivery of photodynamic agents to cancer cells. ACS Nano. 2010 Oct 26; 4(10):6014-20. PMID: 20863095.
      View in: PubMed
    71. Holder PG, Finley DT, Stephanopoulos N, Walton R, Clark DS, Francis M. Dramatic thermal stability of virus-polymer conjugates in hydrophobic solvents. Langmuir. 2010 Nov 16; 26(22):17383-8. PMID: 20964388.
      View in: PubMed
    72. Esser-Kahn AP, Trang V, Francis M. Incorporation of antifreeze proteins into polymer coatings using site-selective bioconjugation. J Am Chem Soc. 2010 Sep 29; 132(38):13264-9. PMID: 20825180.
      View in: PubMed
    73. Stephanopoulos N, Liu M, Tong GJ, Li Z, Liu Y, Yan H, Francis M. Immobilization and one-dimensional arrangement of virus capsids with nanoscale precision using DNA origami. Nano Lett. 2010 Jul 14; 10(7):2714-20. PMID: 20575574; PMCID: PMC3083853.
    74. Witus LS, Francis M. Site-Specific Protein Bioconjugation via a Pyridoxal 5'-Phosphate-Mediated N-Terminal Transamination Reaction. Curr Protoc Chem Biol. 2010 Jun 01; 2(2):125-34. PMID: 23836553; PMCID: PMC4286337.
    75. Crochet AP, Kabir MM, Francis M, Paavola CD. Site-selective dual modification of periplasmic binding proteins for sensing applications. Biosens Bioelectron. 2010 Sep 15; 26(1):55-61. PMID: 20541393.
      View in: PubMed
    76. Meldrum T, Seim KL, Bajaj VS, Palaniappan KK, Wu W, Francis M, Wemmer DE, Pines A. A xenon-based molecular sensor assembled on an MS2 viral capsid scaffold. J Am Chem Soc. 2010 May 05; 132(17):5936-7. PMID: 20392049.
      View in: PubMed
    77. Miller RA, Stephanopoulos N, McFarland JM, Rosko AS, Geissler PL, Francis M. Impact of assembly state on the defect tolerance of TMV-based light harvesting arrays. J Am Chem Soc. 2010 May 05; 132(17):6068-74. PMID: 20392093.
      View in: PubMed
    78. Dedeo MT, Duderstadt KE, Berger JM, Francis M. Nanoscale protein assemblies from a circular permutant of the tobacco mosaic virus. Nano Lett. 2010 Jan; 10(1):181-6. PMID: 19924865.
      View in: PubMed
    79. Tong GJ, Hsiao SC, Carrico ZM, Francis M. Viral capsid DNA aptamer conjugates as multivalent cell-targeting vehicles. J Am Chem Soc. 2009 Aug 12; 131(31):11174-8. PMID: 19603808; PMCID: PMC2737063.
    80. Hsiao SC, Shum BJ, Onoe H, Douglas ES, Gartner ZJ, Mathies RA, Bertozzi CR, Francis M. Direct cell surface modification with DNA for the capture of primary cells and the investigation of myotube formation on defined patterns. Langmuir. 2009 Jun 16; 25(12):6985-91. PMID: 19505164; PMCID: PMC2812030.
    81. Antos JM, McFarland JM, Iavarone AT, Francis M. Chemoselective tryptophan labeling with rhodium carbenoids at mild pH. J Am Chem Soc. 2009 May 06; 131(17):6301-8. PMID: 19366262; PMCID: PMC2722835.
    82. Douglas ES, Hsiao SC, Onoe H, Bertozzi CR, Francis M, Mathies RA. DNA-barcode directed capture and electrochemical metabolic analysis of single mammalian cells on a microelectrode array. Lab Chip. 2009 Jul 21; 9(14):2010-5. PMID: 19568668; PMCID: PMC2892333.
    83. Wu W, Hsiao SC, Carrico ZM, Francis M. Genome-free viral capsids as multivalent carriers for taxol delivery. Angew Chem Int Ed Engl. 2009; 48(50):9493-7. PMID: 19921725; PMCID: PMC2919582.
    84. Stephanopoulos N, Carrico ZM, Francis M. Nanoscale integration of sensitizing chromophores and porphyrins with bacteriophage MS2. Angew Chem Int Ed Engl. 2009; 48(50):9498-502. PMID: 19921726; PMCID: PMC3517085.
    85. Toriello NM, Douglas ES, Thaitrong N, Hsiao SC, Francis M, Bertozzi CR, Mathies RA. Integrated microfluidic bioprocessor for single-cell gene expression analysis. Proc Natl Acad Sci U S A. 2008 Dec 23; 105(51):20173-8. PMID: 19075237; PMCID: PMC2629289.
    86. Esser-Kahn AP, Iavarone AT, Francis M. Metallothionein-cross-linked hydrogels for the selective removal of heavy metals from water. J Am Chem Soc. 2008 Nov 26; 130(47):15820-2. PMID: 18980305.
      View in: PubMed
    87. Scheck RA, Dedeo MT, Iavarone AT, Francis M. Optimization of a biomimetic transamination reaction. J Am Chem Soc. 2008 Sep 03; 130(35):11762-70. PMID: 18683929.
      View in: PubMed
    88. McFarland JM, Joshi NS, Francis M. Characterization of a three-component coupling reaction on proteins by isotopic labeling and nuclear magnetic resonance spectroscopy. J Am Chem Soc. 2008 Jun 18; 130(24):7639-44. PMID: 18498164.
      View in: PubMed
    89. Ma YZ, Miller RA, Fleming GR, Francis M. Energy transfer dynamics in light-harvesting assemblies templated by the tobacco mosaic virus coat protein. J Phys Chem B. 2008 Jun 05; 112(22):6887-92. PMID: 18471010.
      View in: PubMed
    90. Hooker JM, O'Neil JP, Romanini DW, Taylor SE, Francis M. Genome-free viral capsids as carriers for positron emission tomography radiolabels. Mol Imaging Biol. 2008 Jul-Aug; 10(4):182-91. PMID: 18437498.
      View in: PubMed
    91. Chung SW, Presley AD, Elhadj S, Hok S, Hah SS, Chernov AA, Francis M, Eaton BE, Feldheim DL, DeYoreo JJ. Scanning probe-based fabrication of 3D nanostructures via affinity templates, functional RNA, and meniscus-mediated surface remodeling. Scanning. 2008 Mar-Apr; 30(2):159-71. PMID: 18220254.
      View in: PubMed
    92. Datta A, Hooker JM, Botta M, Francis M, Aime S, Raymond KN. High relaxivity gadolinium hydroxypyridonate-viral capsid conjugates: nanosized MRI contrast agents. J Am Chem Soc. 2008 Feb 27; 130(8):2546-52. PMID: 18247608.
      View in: PubMed
    93. Carrico ZM, Romanini DW, Mehl RA, Francis M. Oxidative coupling of peptides to a virus capsid containing unnatural amino acids. Chem Commun (Camb). 2008 Mar 14; (10):1205-7. PMID: 18309418.
      View in: PubMed
    94. Hsiao SC, Crow AK, Lam WA, Bertozzi CR, Fletcher DA, Francis M. DNA-coated AFM cantilevers for the investigation of cell adhesion and the patterning of live cells. Angew Chem Int Ed Engl. 2008; 47(44):8473-7. PMID: 18798192; PMCID: PMC2748828.
    95. Esser-Kahn AP, Francis M. Protein-cross-linked polymeric materials through site-selective bioconjugation. Angew Chem Int Ed Engl. 2008; 47(20):3751-4. PMID: 18399554.
      View in: PubMed
    96. Romanini DW, Francis M. Attachment of peptide building blocks to proteins through tyrosine bioconjugation. Bioconjug Chem. 2008 Jan; 19(1):153-7. PMID: 18069779.
      View in: PubMed
    97. Francis M, Doudna Cate JH. Chemical biology at Berkeley. ACS Chem Biol. 2007 Nov 20; 2(11):702-5. PMID: 18030983.
      View in: PubMed
    98. Douglas ES, Chandra RA, Bertozzi CR, Mathies RA, Francis M. Self-assembled cellular microarrays patterned using DNA barcodes. Lab Chip. 2007 Nov; 7(11):1442-8. PMID: 17960269.
      View in: PubMed
    99. Hooker JM, Datta A, Botta M, Raymond KN, Francis M. Magnetic resonance contrast agents from viral capsid shells: a comparison of exterior and interior cargo strategies. Nano Lett. 2007 Aug; 7(8):2207-10. PMID: 17630809.
      View in: PubMed
    100. Kovacs EW, Hooker JM, Romanini DW, Holder PG, Berry KE, Francis M. Dual-surface-modified bacteriophage MS2 as an ideal scaffold for a viral capsid-based drug delivery system. Bioconjug Chem. 2007 Jul-Aug; 18(4):1140-7. PMID: 17602681.
      View in: PubMed
    101. Johnson HR, Hooker JM, Francis M, Clark DS. Solubilization and stabilization of bacteriophage MS2 in organic solvents. Biotechnol Bioeng. 2007 Jun 01; 97(2):224-34. PMID: 17099911.
      View in: PubMed
    102. Scheck RA, Francis M. Regioselective labeling of antibodies through N-terminal transamination. ACS Chem Biol. 2007 Apr 24; 2(4):247-51. PMID: 17455901.
      View in: PubMed
    103. Miller RA, Presley AD, Francis M. Self-assembling light-harvesting systems from synthetically modified tobacco mosaic virus coat proteins. J Am Chem Soc. 2007 Mar 21; 129(11):3104-9. PMID: 17319656.
      View in: PubMed
    104. Holder PG, Francis M. Integration of a self-assembling protein scaffold with water-soluble single-walled carbon nanotubes. Angew Chem Int Ed Engl. 2007; 46(23):4370-3. PMID: 17458849.
      View in: PubMed
    105. Hooker JM, Esser-Kahn AP, Francis M. Modification of aniline containing proteins using an oxidative coupling strategy. J Am Chem Soc. 2006 Dec 13; 128(49):15558-9. PMID: 17147343.
      View in: PubMed
    106. Gilmore JM, Scheck RA, Esser-Kahn AP, Joshi NS, Francis M. N-terminal protein modification through a biomimetic transamination reaction. Angew Chem Int Ed Engl. 2006 Aug 11; 45(32):5307-11. PMID: 16847857.
      View in: PubMed
    107. Nguyen T, Joshi NS, Francis M. An affinity-based method for the purification of fluorescently-labeled biomolecules. Bioconjug Chem. 2006 Jul-Aug; 17(4):869-72. PMID: 16848391.
      View in: PubMed
    108. Antos JM, Francis M. Transition metal catalyzed methods for site-selective protein modification. Curr Opin Chem Biol. 2006 Jun; 10(3):253-62. PMID: 16698310.
      View in: PubMed
    109. Tilley SD, Francis M. Tyrosine-selective protein alkylation using pi-allylpalladium complexes. J Am Chem Soc. 2006 Feb 01; 128(4):1080-1. PMID: 16433516.
      View in: PubMed
    110. Chandra RA, Douglas ES, Mathies RA, Bertozzi CR, Francis M. Programmable cell adhesion encoded by DNA hybridization. Angew Chem Int Ed Engl. 2006 Jan 30; 45(6):896-901. PMID: 16370010.
      View in: PubMed
    111. McFarland JM, Francis M. Reductive alkylation of proteins using iridium catalyzed transfer hydrogenation. J Am Chem Soc. 2005 Oct 05; 127(39):13490-1. PMID: 16190700.
      View in: PubMed
    112. Schlick TL, Ding Z, Kovacs EW, Francis M. Dual-surface modification of the tobacco mosaic virus. J Am Chem Soc. 2005 Mar 23; 127(11):3718-23. PMID: 15771505.
      View in: PubMed
    113. Joshi NS, Whitaker LR, Francis M. A three-component Mannich-type reaction for selective tyrosine bioconjugation. J Am Chem Soc. 2004 Dec 15; 126(49):15942-3. PMID: 15584710.
      View in: PubMed
    114. Antos JM, Francis M. Selective tryptophan modification with rhodium carbenoids in aqueous solution. J Am Chem Soc. 2004 Aug 25; 126(33):10256-7. PMID: 15315433.
      View in: PubMed
    115. Hooker JM, Kovacs EW, Francis M. Interior surface modification of bacteriophage MS2. J Am Chem Soc. 2004 Mar 31; 126(12):3718-9. PMID: 15038717.
      View in: PubMed
    116. Nguyen T, Francis M. Practical synthetic route to functionalized rhodamine dyes. Org Lett. 2003 Sep 04; 5(18):3245-8. PMID: 12943398.
      View in: PubMed
    117. Goh SL, Francis M, Fréchet JM. Self-assembled oligonucleotide-polyester dendrimers. Chem Commun (Camb). 2002 Dec 21; (24):2954-5. PMID: 12536763.
      View in: PubMed
    118. Francis M, Jacobsen EN. Discovery of Novel Catalysts for Alkene Epoxidation from Metal-Binding Combinatorial Libraries. Angew Chem Int Ed Engl. 1999 Apr 01; 38(7):937-941. PMID: 29711875.
      View in: PubMed
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