Niyogi, Krishna

TitleBiologist Faculty
InstitutionLawrence Berkeley National Lab
DepartmentMolecular Biophys & Integ Bio
Address1 Cyclotron Road
Berkeley CA 94720
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    Collapse Research 
    Collapse Research Activities and Funding
    Reverse genetics of Chlamydomonas using TILLING
    NIH/NIGMS R24GM076676Sep 1, 2006 - Aug 31, 2010
    Role: Principal Investigator
    Singlet Oxygen Signaling
    NIH/NIGMS R01GM071908Aug 1, 2004 - Jul 31, 2010
    Role: Principal Investigator
    Antioxidant metabolism in Chlamydomonas
    NIH/NIGMS R01GM058799Jan 1, 1999 - Feb 28, 2010
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Wittkopp TM, Saroussi S, Yang W, Johnson X, Kim RG, Heinnickel ML, Russell JJ, Phuthong W, Dent RM, Broeckling CD, Peers G, Lohr M, Wollman FA, Niyogi K, Grossman AR. GreenCut protein CPLD49 of Chlamydomonas reinhardtii associates with thylakoid membranes and is required for cytochrome b6 f complex accumulation. Plant J. 2018 Mar 30. PMID: 29602195.
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    2. Glowacka K, Kromdijk J, Kucera K, Xie J, Cavanagh AP, Leonelli L, Leakey ADB, Ort DR, Niyogi K, Long SP. Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop. Nat Commun. 2018 03 06; 9(1):868. PMID: 29511193.
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    3. Malnoë A, Schultink A, Shahrasbi S, Rumeau D, Havaux M, Niyogi K. The Plastid Lipocalin LCNP Is Required for Sustained Photoprotective Energy Dissipation in Arabidopsis. Plant Cell. 2018 Jan; 30(1):196-208. PMID: 29233855.
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    4. Park S, Fischer AL, Li Z, Bassi R, Niyogi K, Fleming GR. Snapshot Transient Absorption Spectroscopy of Carotenoid Radical Cations in High-Light-Acclimating Thylakoid Membranes. J Phys Chem Lett. 2017 Nov 16; 8(22):5548-5554. PMID: 29083901.
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    5. Leonelli L, Brooks MD, Niyogi K. Engineering the lutein epoxide cycle into Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2017 Aug 15; 114(33):E7002-E7008. PMID: 28760990.
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    6. Leuenberger M, Morris JM, Chan AM, Leonelli L, Niyogi K, Fleming GR. Dissecting and modeling zeaxanthin- and lutein-dependent nonphotochemical quenching in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2017 Aug 15; 114(33):E7009-E7017. PMID: 28652334.
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    7. Niyogi K. Editorial overview: Physiology and metabolism: Light responses from photoreceptors to photosynthesis and photoprotection. Curr Opin Plant Biol. 2017 Jun; 37:iv-vi. PMID: 28606394.
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    8. Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. PLoS Genet. 2017 May; 13(5):e1006802. PMID: 28542203.
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    9. Xu CS, Hayworth KJ, Lu Z, Grob P, Hassan AM, García-Cerdán JG, Niyogi K, Nogales E, Weinberg RJ, Hess HF. Enhanced FIB-SEM systems for large-volume 3D imaging. Elife. 2017 05 13; 6. PMID: 28500755.
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    10. Roth MS, Cokus SJ, Gallaher SD, Walter A, Lopez D, Erickson E, Endelman B, Westcott D, Larabell CA, Merchant SS, Pellegrini M, Niyogi K. Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production. Proc Natl Acad Sci U S A. 2017 05 23; 114(21):E4296-E4305. PMID: 28484037.
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    11. Dall'Osto L, Cazzaniga S, Bressan M, Palecek D, Židek K, Niyogi K, Fleming GR, Zigmantas D, Bassi R. Two mechanisms for dissipation of excess light in monomeric and trimeric light-harvesting complexes. Nat Plants. 2017 04 10; 3:17033. PMID: 28394312.
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    12. Gee CW, Niyogi K. The carbonic anhydrase CAH1 is an essential component of the carbon-concentrating mechanism in Nannochloropsis oceanica. Proc Natl Acad Sci U S A. 2017 04 25; 114(17):4537-4542. PMID: 28396394.
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    13. Kirst H, Gabilly ST, Niyogi K, Lemaux PG, Melis A. Photosynthetic antenna engineering to improve crop yields. Planta. 2017 May; 245(5):1009-1020. PMID: 28188423.
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    14. Allorent G, Lefebvre-Legendre L, Chappuis R, Kuntz M, Truong TB, Niyogi K, Ulm R, Goldschmidt-Clermont M. UV-B photoreceptor-mediated protection of the photosynthetic machinery in Chlamydomonas reinhardtii. Proc Natl Acad Sci U S A. 2016 12 20; 113(51):14864-14869. PMID: 27930292.
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    15. Kromdijk J, Glowacka K, Leonelli L, Gabilly ST, Iwai M, Niyogi K, Long SP. Improving photosynthesis and crop productivity by accelerating recovery from photoprotection. Science. 2016 11 18; 354(6314):857-861. PMID: 27856901.
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    16. Leonelli L, Erickson E, Lyska D, Niyogi K. Transient expression in Nicotiana benthamiana for rapid functional analysis of genes involved in non-photochemical quenching and carotenoid biosynthesis. Plant J. 2016 Nov; 88(3):375-386. PMID: 27407008.
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    17. Li Z, Peers G, Dent RM, Bai Y, Yang SY, Apel W, Leonelli L, Niyogi K. Evolution of an atypical de-epoxidase for photoprotection in the green lineage. Nat Plants. 2016 09 12; 2:16140. PMID: 27618685.
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    18. Correa-Galvis V, Redekop P, Guan K, Griess A, Truong TB, Wakao S, Niyogi K, Jahns P. Photosystem II Subunit PsbS Is Involved in the Induction of LHCSR Protein-dependent Energy Dissipation in Chlamydomonas reinhardtii. J Biol Chem. 2016 08 12; 291(33):17478-87. PMID: 27358399; PMCID: PMC5016143 [Available on 08/12/17].
    19. Armbruster U, Leonelli L, Correa Galvis V, Strand D, Quinn EH, Jonikas MC, Niyogi K. Regulation and Levels of the Thylakoid K+/H+ Antiporter KEA3 Shape the Dynamic Response of Photosynthesis in Fluctuating Light. Plant Cell Physiol. 2016 Jul; 57(7):1557-1567. PMID: 27335350.
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    20. Ballottari M, Truong TB, De Re E, Erickson E, Stella GR, Fleming GR, Bassi R, Niyogi K. Identification of pH-sensing Sites in the Light Harvesting Complex Stress-related 3 Protein Essential for Triggering Non-photochemical Quenching in Chlamydomonas reinhardtii. J Biol Chem. 2016 Apr 01; 291(14):7334-46. PMID: 26817847; PMCID: PMC4817166.
    21. Brzezowski P, Sharifi MN, Dent RM, Morhard MK, Niyogi K, Grimm B. Mg chelatase in chlorophyll synthesis and retrograde signaling in Chlamydomonas reinhardtii: CHLI2 cannot substitute for CHLI1. J Exp Bot. 2016 06; 67(13):3925-38. PMID: 26809558; PMCID: PMC4915523.
    22. Glowacka K, Kromdijk J, Leonelli L, Niyogi K, Clemente TE, Long SP. An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants. Plant Cell Environ. 2016 Apr; 39(4):908-17. PMID: 26670088; PMCID: PMC5021166.
    23. Tibiletti T, Hernández-Prieto MA, Matthijs HC, Niyogi K, Funk C. Deletion of the gene family of small chlorophyll-binding proteins (ScpABCDE) offsets C/N homeostasis in Synechocystis PCC 6803. Biochim Biophys Acta. 2016 Apr; 1857(4):396-407. PMID: 26646103.
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    24. Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, Lim J, Tice H, Daum C, Xu J, Northen T, Visel A, Bristow J, Niyogi K, Wei CL. Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae. Nat Plants. 2015 Jul 27; 1:15107. PMID: 27250540.
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    25. Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi K, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG. Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proc Natl Acad Sci U S A. 2015 Jul 14; 112(28):8529-36. PMID: 26124102.
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    26. Tietz S, Puthiyaveetil S, Enlow HM, Yarbrough R, Wood M, Semchonok DA, Lowry T, Li Z, Jahns P, Boekema EJ, Lenhert S, Niyogi K, Kirchhoff H. Functional Implications of Photosystem II Crystal Formation in Photosynthetic Membranes. J Biol Chem. 2015 May 29; 290(22):14091-106. PMID: 25897076; PMCID: PMC4447980.
    27. Erickson E, Wakao S, Niyogi K. Light stress and photoprotection in Chlamydomonas reinhardtii. Plant J. 2015 May; 82(3):449-65. PMID: 25758978.
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    28. Dent RM, Sharifi MN, Malnoë A, Haglund C, Calderon RH, Wakao S, Niyogi K. Large-scale insertional mutagenesis of Chlamydomonas supports phylogenomic functional prediction of photosynthetic genes and analysis of classical acetate-requiring mutants. Plant J. 2015 Apr; 82(2):337-51. PMID: 25711437.
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    29. Sylak-Glassman EJ, Malnoë A, De Re E, Brooks MD, Fischer AL, Niyogi K, Fleming GR. Distinct roles of the photosystem II protein PsbS and zeaxanthin in the regulation of light harvesting in plants revealed by fluorescence lifetime snapshots. Proc Natl Acad Sci U S A. 2014 Dec 09; 111(49):17498-503. PMID: 25422428; PMCID: PMC4267351.
    30. Onoa B, Schneider AR, Brooks MD, Grob P, Nogales E, Geissler PL, Niyogi K, Bustamante C. Atomic force microscopy of photosystem II and its unit cell clustering quantitatively delineate the mesoscale variability in Arabidopsis thylakoids. PLoS One. 2014; 9(7):e101470. PMID: 25007326; PMCID: PMC4090009.
    31. Brzezowski P, Schlicke H, Richter A, Dent RM, Niyogi K, Grimm B. The GUN4 protein plays a regulatory role in tetrapyrrole biosynthesis and chloroplast-to-nucleus signalling in Chlamydomonas reinhardtii. Plant J. 2014 Jul; 79(2):285-98. PMID: 24861705.
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    32. Wakao S, Chin BL, Ledford HK, Dent RM, Casero D, Pellegrini M, Merchant SS, Niyogi K. Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii. Elife. 2014 May 23; 3:e02286. PMID: 24859755; PMCID: PMC4067076.
    33. Clausen CH, Brooks MD, Li TD, Grob P, Kemalyan G, Nogales E, Niyogi K, Fletcher DA. Dynamic mechanical responses of Arabidopsis thylakoid membranes during PSII-specific illumination. Biophys J. 2014 May 06; 106(9):1864-70. PMID: 24806918; PMCID: PMC4017268.
    34. Johnson X, Steinbeck J, Dent RM, Takahashi H, Richaud P, Ozawa S, Houille-Vernes L, Petroutsos D, Rappaport F, Grossman AR, Niyogi K, Hippler M, Alric J. Proton gradient regulation 5-mediated cyclic electron flow under ATP- or redox-limited conditions: a study of ?ATpase pgr5 and ?rbcL pgr5 mutants in the green alga Chlamydomonas reinhardtii. Plant Physiol. 2014 May; 165(1):438-52. PMID: 24623849; PMCID: PMC4012601.
    35. Shih PM, Zarzycki J, Niyogi K, Kerfeld CA. Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium. J Biol Chem. 2014 Apr 04; 289(14):9493-500. PMID: 24558040; PMCID: PMC3975000.
    36. Calderon RH, García-Cerdán JG, Malnoë A, Cook R, Russell JJ, Gaw C, Dent RM, de Vitry C, Niyogi K. A conserved rubredoxin is necessary for photosystem II accumulation in diverse oxygenic photoautotrophs. J Biol Chem. 2013 Sep 13; 288(37):26688-96. PMID: 23900844; PMCID: PMC3772215.
    37. Brooks MD, Sylak-Glassman EJ, Fleming GR, Niyogi K. A thioredoxin-like/ß-propeller protein maintains the efficiency of light harvesting in Arabidopsis. Proc Natl Acad Sci U S A. 2013 Jul 16; 110(29):E2733-40. PMID: 23818601; PMCID: PMC3718131.
    38. Kobayashi K, Sasaki D, Noguchi K, Fujinuma D, Komatsu H, Kobayashi M, Sato M, Toyooka K, Sugimoto K, Niyogi K, Wada H, Masuda T. Photosynthesis of root chloroplasts developed in Arabidopsis lines overexpressing GOLDEN2-LIKE transcription factors. Plant Cell Physiol. 2013 Aug; 54(8):1365-77. PMID: 23749810; PMCID: PMC3730084.
    39. Niyogi K, Truong TB. Evolution of flexible non-photochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis. Curr Opin Plant Biol. 2013 Jun; 16(3):307-14. PMID: 23583332.
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    40. Allorent G, Tokutsu R, Roach T, Peers G, Cardol P, Girard-Bascou J, Seigneurin-Berny D, Petroutsos D, Kuntz M, Breyton C, Franck F, Wollman FA, Niyogi K, Krieger-Liszkay A, Minagawa J, Finazzi G. A dual strategy to cope with high light in Chlamydomonas reinhardtii. Plant Cell. 2013 Feb; 25(2):545-57. PMID: 23424243; PMCID: PMC3608777.
    41. Duanmu D, Casero D, Dent RM, Gallaher S, Yang W, Rockwell NC, Martin SS, Pellegrini M, Niyogi K, Merchant SS, Grossman AR, Lagarias JC. Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proc Natl Acad Sci U S A. 2013 Feb 26; 110(9):3621-6. PMID: 23345435; PMCID: PMC3587268.
    42. Heinnickel ML, Alric J, Wittkopp T, Yang W, Catalanotti C, Dent R, Niyogi K, Wollman FA, Grossman AR. Novel thylakoid membrane GreenCut protein CPLD38 impacts accumulation of the cytochrome b6f complex and associated regulatory processes. J Biol Chem. 2013 Mar 08; 288(10):7024-36. PMID: 23303190; PMCID: PMC3591612.
    43. Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. PLoS Genet. 2012; 8(11):e1003064. PMID: 23166516; PMCID: PMC3499364.
    44. Caliandro R, Nagel KA, Kastenholz B, Bassi R, Li Z, Niyogi K, Pogson BJ, Schurr U, Matsubara S. Effects of altered a- and ß-branch carotenoid biosynthesis on photoprotection and whole-plant acclimation of Arabidopsis to photo-oxidative stress. Plant Cell Environ. 2013 Feb; 36(2):438-53. PMID: 22860767; PMCID: PMC3640260.
    45. Zaks J, Amarnath K, Kramer DM, Niyogi K, Fleming GR. A kinetic model of rapidly reversible nonphotochemical quenching. Proc Natl Acad Sci U S A. 2012 Sep 25; 109(39):15757-62. PMID: 22891305; PMCID: PMC3465407.
    46. Tran PT, Sharifi MN, Poddar S, Dent RM, Niyogi K. Intragenic enhancers and suppressors of phytoene desaturase mutations in Chlamydomonas reinhardtii. PLoS One. 2012; 7(8):e42196. PMID: 22912689; PMCID: PMC3419514.
    47. Cazzaniga S, Li Z, Niyogi K, Bassi R, Dall'Osto L. The Arabidopsis szl1 mutant reveals a critical role of ß-carotene in photosystem I photoprotection. Plant Physiol. 2012 Aug; 159(4):1745-58. PMID: 23029671; PMCID: PMC3425210.
    48. Amarnath K, Zaks J, Park SD, Niyogi K, Fleming GR. Fluorescence lifetime snapshots reveal two rapidly reversible mechanisms of photoprotection in live cells of Chlamydomonas reinhardtii. Proc Natl Acad Sci U S A. 2012 May 29; 109(22):8405-10. PMID: 22586081; PMCID: PMC3365229.
    49. Fischer BB, Ledford HK, Wakao S, Huang SG, Casero D, Pellegrini M, Merchant SS, Koller A, Eggen RI, Niyogi K. SINGLET OXYGEN RESISTANT 1 links reactive electrophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii. Proc Natl Acad Sci U S A. 2012 May 15; 109(20):E1302-11. PMID: 22529359; PMCID: PMC3356615.
    50. Kilian O, Benemann CS, Niyogi K, Vick B. High-efficiency homologous recombination in the oil-producing alga Nannochloropsis sp. Proc Natl Acad Sci U S A. 2011 Dec 27; 108(52):21265-9. PMID: 22123974; PMCID: PMC3248512.
    51. Li Z, Keasling JD, Niyogi K. Overlapping photoprotective function of vitamin E and carotenoids in Chlamydomonas. Plant Physiol. 2012 Jan; 158(1):313-23. PMID: 22080601; PMCID: PMC3252108.
    52. Bonente G, Ballottari M, Truong TB, Morosinotto T, Ahn TK, Fleming GR, Niyogi K, Bassi R. Analysis of LhcSR3, a protein essential for feedback de-excitation in the green alga Chlamydomonas reinhardtii. PLoS Biol. 2011 Jan 18; 9(1):e1000577. PMID: 21267060; PMCID: PMC3022525.
    53. Brooks MD, Niyogi K. Use of a pulse-amplitude modulated chlorophyll fluorometer to study the efficiency of photosynthesis in Arabidopsis plants. Methods Mol Biol. 2011; 775:299-310. PMID: 21863450.
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    54. Fischer BB, Eggen RI, Niyogi K. Characterization of singlet oxygen-accumulating mutants isolated in a screen for altered oxidative stress response in Chlamydomonas reinhardtii. BMC Plant Biol. 2010 Dec 17; 10:279. PMID: 21167020; PMCID: PMC3022906.
    55. Murchie EH, Niyogi K. Manipulation of photoprotection to improve plant photosynthesis. Plant Physiol. 2011 Jan; 155(1):86-92. PMID: 21084435; PMCID: PMC3075776.
    56. Jung HS, Okegawa Y, Shih PM, Kellogg E, Abdel-Ghany SE, Pilon M, Sjölander K, Shikanai T, Niyogi K. Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport. PLoS One. 2010 Jul 21; 5(7):e11688. PMID: 20657737; PMCID: PMC2908147.
    57. Terauchi AM, Peers G, Kobayashi MC, Niyogi K, Merchant SS. Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis. Photosynth Res. 2010 Jul; 105(1):39-49. PMID: 20535560; PMCID: PMC2885298.
    58. Grossman AR, Karpowicz SJ, Heinnickel M, Dewez D, Hamel B, Dent R, Niyogi K, Johnson X, Alric J, Wollman FA, Li H, Merchant SS. Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation. Photosynth Res. 2010 Nov; 106(1-2):3-17. PMID: 20490922; PMCID: PMC2947710.
    59. Meinecke L, Alawady A, Schroda M, Willows R, Kobayashi MC, Niyogi K, Grimm B, Beck CF. Chlorophyll-deficient mutants of Chlamydomonas reinhardtii that accumulate magnesium protoporphyrin IX. Plant Mol Biol. 2010 Apr; 72(6):643-58. PMID: 20127142; PMCID: PMC2837180.
    60. Jung HS, Niyogi K. Mutations in Arabidopsis YCF20-like genes affect thermal dissipation of excess absorbed light energy. Planta. 2010 Mar; 231(4):923-37. PMID: 20087601; PMCID: PMC2820688.
    61. Peers G, Truong TB, Ostendorf E, Busch A, Elrad D, Grossman AR, Hippler M, Niyogi K. An ancient light-harvesting protein is critical for the regulation of algal photosynthesis. Nature. 2009 Nov 26; 462(7272):518-21. PMID: 19940928.
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    62. Cohu CM, Abdel-Ghany SE, Gogolin Reynolds KA, Onofrio AM, Bodecker JR, Kimbrel JA, Niyogi K, Pilon M. Copper delivery by the copper chaperone for chloroplast and cytosolic copper/zinc-superoxide dismutases: regulation and unexpected phenotypes in an Arabidopsis mutant. Mol Plant. 2009 Nov; 2(6):1336-50. PMID: 19969519.
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    63. Sirikhachornkit A, Shin JW, Baroli I, Niyogi K. Replacement of alpha-tocopherol by beta-tocopherol enhances resistance to photooxidative stress in a xanthophyll-deficient strain of Chlamydomonas reinhardtii. Eukaryot Cell. 2009 Nov; 8(11):1648-57. PMID: 19717743; PMCID: PMC2772410.
    64. Li Z, Ahn TK, Avenson TJ, Ballottari M, Cruz JA, Kramer DM, Bassi R, Fleming GR, Keasling JD, Niyogi K. Lutein accumulation in the absence of zeaxanthin restores nonphotochemical quenching in the Arabidopsis thaliana npq1 mutant. Plant Cell. 2009 Jun; 21(6):1798-812. PMID: 19549928.
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    65. Kim EH, Li XP, Razeghifard R, Anderson JM, Niyogi K, Pogson BJ, Chow WS. The multiple roles of light-harvesting chlorophyll a/b-protein complexes define structure and optimize function of Arabidopsis chloroplasts: a study using two chlorophyll b-less mutants. Biochim Biophys Acta. 2009 Aug; 1787(8):973-84. PMID: 19406099.
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    66. Gutman BL, Niyogi K. Evidence for base excision repair of oxidative DNA damage in chloroplasts of Arabidopsis thaliana. J Biol Chem. 2009 Jun 19; 284(25):17006-12. PMID: 19372224; PMCID: PMC2719338.
    67. Jung HS, Niyogi K. Quantitative genetic analysis of thermal dissipation in Arabidopsis. Plant Physiol. 2009 Jun; 150(2):977-86. PMID: 19339502; PMCID: PMC2689978.
    68. Li Z, Wakao S, Fischer BB, Niyogi K. Sensing and responding to excess light. Annu Rev Plant Biol. 2009; 60:239-60. PMID: 19575582.
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    69. Avenson TJ, Ahn TK, Niyogi K, Ballottari M, Bassi R, Fleming GR. Lutein can act as a switchable charge transfer quencher in the CP26 light-harvesting complex. J Biol Chem. 2009 Jan 30; 284(5):2830-5. PMID: 18990705.
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    70. Cheng YC, Ahn TK, Avenson TJ, Zigmantas D, Niyogi K, Ballottari M, Bassi R, Fleming GR. Kinetic modeling of charge-transfer quenching in the CP29 minor complex. J Phys Chem B. 2008 Oct 23; 112(42):13418-23. PMID: 18826191.
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    71. Ahn TK, Avenson TJ, Ballottari M, Cheng YC, Niyogi K, Bassi R, Fleming GR. Architecture of a charge-transfer state regulating light harvesting in a plant antenna protein. Science. 2008 May 09; 320(5877):794-7. PMID: 18467588.
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    72. Peers G, Niyogi K. Pond scum genomics: the genomes of Chlamydomonas and Ostreococcus. Plant Cell. 2008 Mar; 20(3):502-7. PMID: 18359853; PMCID: PMC2329942.
    73. Avenson TJ, Ahn TK, Zigmantas D, Niyogi K, Li Z, Ballottari M, Bassi R, Fleming GR. Zeaxanthin radical cation formation in minor light-harvesting complexes of higher plant antenna. J Biol Chem. 2008 Feb 08; 283(6):3550-8. PMID: 17991753.
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    74. Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, Kapitonov VV, Ren Q, Ferris P, Lindquist E, Shapiro H, Lucas SM, Grimwood J, Schmutz J, Cardol P, Cerutti H, Chanfreau G, Chen CL, Cognat V, Croft MT, Dent R, Dutcher S, Fernández E, Fukuzawa H, González-Ballester D, González-Halphen D, Hallmann A, Hanikenne M, Hippler M, Inwood W, Jabbari K, Kalanon M, Kuras R, Lefebvre PA, Lemaire SD, Lobanov AV, Lohr M, Manuell A, Meier I, Mets L, Mittag M, Mittelmeier T, Moroney JV, Moseley J, Napoli C, Nedelcu AM, Niyogi K, Novoselov SV, Paulsen IT, Pazour G, Purton S, Ral JP, Riaño-Pachón DM, Riekhof W, Rymarquis L, Schroda M, Stern D, Umen J, Willows R, Wilson N, Zimmer SL, Allmer J, Balk J, Bisova K, Chen CJ, Elias M, Gendler K, Hauser C, Lamb MR, Ledford H, Long JC, Minagawa J, Page MD, Pan J, Pootakham W, Roje S, Rose A, Stahlberg E, Terauchi AM, Yang P, Ball S, Bowler C, Dieckmann CL, Gladyshev VN, Green P, Jorgensen R, Mayfield S, Mueller-Roeber B, Rajamani S, Sayre RT, Brokstein P, Dubchak I, Goodstein D, Hornick L, Huang YW, Jhaveri J, Luo Y, Martínez D, Ngau WC, Otillar B, Poliakov A, Porter A, Szajkowski L, Werner G, Zhou K, Grigoriev IV, Rokhsar DS, Grossman AR. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science. 2007 Oct 12; 318(5848):245-50. PMID: 17932292; PMCID: PMC2875087.
    75. Ledford HK, Chin BL, Niyogi K. Acclimation to singlet oxygen stress in Chlamydomonas reinhardtii. Eukaryot Cell. 2007 Jun; 6(6):919-30. PMID: 17435007; PMCID: PMC1951523.
    76. Shao N, Vallon O, Dent R, Niyogi K, Beck CF. Defects in the cytochrome b6/f complex prevent light-induced expression of nuclear genes involved in chlorophyll biosynthesis. Plant Physiol. 2006 Jul; 141(3):1128-37. PMID: 16679422; PMCID: PMC1489919.
    77. Golan T, Müller-Moulé P, Niyogi K. Photoprotection mutants of Arabidopsis thaliana acclimate to high light by increasing photosynthesis and specific antioxidants. Plant Cell Environ. 2006 May; 29(5):879-87. PMID: 17087471.
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    78. Pichersky E, Niyogi K. Physiology and metabolism: the second coming of plant biochemistry and physiology. Curr Opin Plant Biol. 2006 Jun; 9(3):217-9. PMID: 16617033.
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