Loading...

Chu, Ken

TitleComputer Systems Group Lead
InstitutionLawrence Berkeley National Lab
DepartmentComputational Research
Address1 Cyclotron Road
Berkeley CA 94720
Phone925/296-5691
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
    List All   |   Timeline
    1. Hadjithomas M, Chen IA, Chu K, Huang J, Ratner A, Palaniappan K, Andersen E, Markowitz V, Kyrpides NC, Ivanova NN. IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res. 2017 Jan 04; 45(D1):D560-D565. PMID: 27903896.
      View in: PubMed
    2. Chen IA, Markowitz VM, Chu K, Palaniappan K, Szeto E, Pillay M, Ratner A, Huang J, Andersen E, Huntemann M, Varghese N, Hadjithomas M, Tennessen K, Nielsen T, Ivanova NN, Kyrpides NC. IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res. 2017 Jan 04; 45(D1):D507-D516. PMID: 27738135.
      View in: PubMed
    3. Chen IM, Markowitz VM, Palaniappan K, Szeto E, Chu K, Huang J, Ratner A, Pillay M, Hadjithomas M, Huntemann M, Mikhailova N, Ovchinnikova G, Ivanova NN, Kyrpides NC. Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system. BMC Genomics. 2016 Apr 26; 17:307. PMID: 27118214; PMCID: PMC4847265.
    4. Markowitz VM, Chen IA, Chu K, Pati A, Ivanova NN, Kyrpides NC. Ten years of maintaining and expanding a microbial genome and metagenome analysis system. Trends Microbiol. 2015 Nov; 23(11):730-741. PMID: 26439299.
      View in: PubMed
    5. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Pillay M, Ratner A, Huang J, Woyke T, Huntemann M, Anderson I, Billis K, Varghese N, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC. IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res. 2014 Jan; 42(Database issue):D560-7. PMID: 24165883; PMCID: PMC3965111.
    6. Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Pillay M, Ratner A, Huang J, Pagani I, Tringe S, Huntemann M, Billis K, Varghese N, Tennessen K, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC. IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 2014 Jan; 42(Database issue):D568-73. PMID: 24136997; PMCID: PMC3964948.
    7. Chen IM, Markowitz VM, Chu K, Anderson I, Mavromatis K, Kyrpides NC, Ivanova NN. Improving microbial genome annotations in an integrated database context. PLoS One. 2013; 8(2):e54859. PMID: 23424620; PMCID: PMC3570495.
    8. Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Jacob B, Ratner A, Liolios K, Pagani I, Huntemann M, Mavromatis K, Ivanova NN, Kyrpides NC. IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project. PLoS One. 2012; 7(7):e40151. PMID: 22792232; PMCID: PMC3390314.
    9. Fan B, Dachrut S, Coral H, Yuen ST, Chu K, Law S, Zhang L, Ji J, Leung SY, Chen X. Integration of DNA copy number alterations and transcriptional expression analysis in human gastric cancer. PLoS One. 2012; 7(4):e29824. PMID: 22539939; PMCID: PMC3335165.
    10. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res. 2012 Jan; 40(Database issue):D115-22. PMID: 22194640; PMCID: PMC3245086.
    11. Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Grechkin Y, Ratner A, Jacob B, Pati A, Huntemann M, Liolios K, Pagani I, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res. 2012 Jan; 40(Database issue):D123-9. PMID: 22086953; PMCID: PMC3245048.
    12. Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC. Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One. 2009 Nov 24; 4(11):e7979. PMID: 19956731; PMCID: PMC2776528.
    13. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC. The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. 2010 Jan; 38(Database issue):D382-90. PMID: 19864254; PMCID: PMC2808961.
    14. Markowitz VM, Mavromatis K, Ivanova NN, Chen IM, Chu K, Kyrpides NC. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics. 2009 Sep 01; 25(17):2271-8. PMID: 19561336.
      View in: PubMed
    15. Markowitz VM, Szeto E, Palaniappan K, Grechkin Y, Chu K, Chen IM, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC. The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 2008 Jan; 36(Database issue):D528-33. PMID: 17933782; PMCID: PMC2238897.
    16. Markowitz VM, Ivanova NN, Szeto E, Palaniappan K, Chu K, Dalevi D, Chen IM, Grechkin Y, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Hugenholtz P, Kyrpides NC. IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 2008 Jan; 36(Database issue):D534-8. PMID: 17932063; PMCID: PMC2238950.
    17. Kem R, Chu K. Cambodian cancer incidence rates in California and Washington, 1998-2002. Cancer. 2007 Sep 15; 110(6):1370-5. PMID: 17654663.
      View in: PubMed
    Ken's Networks
    Concepts
    Derived automatically from this person's publications.
    _
    Co-Authors
    People in Profiles who have published with this person.
    _
    Related Authors
    People who share related concepts with this person.
    _

    This site is running Profiles RNS version v2.10.1-576-g789c7b32 on PROFILES-PWEB02.