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    Han, Ju

    TitleElectronic Research Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentBiological Systems & Eng
    Address1 Cyclotron Road
    Berkeley CA 94720
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H. Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Med Image Comput Comput Assist Interv. 2016 Oct; 9900:72-80. PMID: 28018994.
        View in: PubMed
      2. Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H. When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections. Med Image Anal. 2017 Jan; 35:530-543. PMID: 27644083.
        View in: PubMed
      3. Bilgin CC, Fontenay G, Cheng Q, Chang H, Han J, Parvin B. BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 2016; 11(3):e0148379. PMID: 26978075; PMCID: PMC4792475.
      4. Becker-Weimann S, Xiong G, Furuta S, Han J, Kuhn I, Akavia UD, Pe'er D, Bissell MJ, Xu R. NFkB disrupts tissue polarity in 3D by preventing integration of microenvironmental signals. Oncotarget. 2013 Nov; 4(11):2010-20. PMID: 24243820; PMCID: PMC3875766.
      5. Chang H, Han J, Borowsky A, Loss L, Gray JW, Spellman PT, Parvin B. Invariant delineation of nuclear architecture in glioblastoma multiforme for clinical and molecular association. IEEE Trans Med Imaging. 2013 Apr; 32(4):670-82. PMID: 23221815; PMCID: PMC3728287.
      6. Snijders AM, Marchetti F, Bhatnagar S, Duru N, Han J, Hu Z, Mao JH, Gray JW, Wyrobek AJ. Genetic differences in transcript responses to low-dose ionizing radiation identify tissue functions associated with breast cancer susceptibility. PLoS One. 2012; 7(10):e45394. PMID: 23077491; PMCID: PMC3471924.
      7. Chang H, Han J, Spellman PT, Parvin B. Multireference level set for the characterization of nuclear morphology in glioblastoma multiforme. IEEE Trans Biomed Eng. 2012 Dec; 59(12):3460-7. PMID: 22987497; PMCID: PMC3728286.
      8. Zhang K, Han J, Groesser T, Fontenay G, Parvin B. Inference of causal networks from time-varying transcriptome data via sparse coding. PLoS One. 2012; 7(8):e42306. PMID: 22916126; PMCID: PMC3423420.
      9. Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang YT, Parvin B. Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 2012; 7(1):e28802. PMID: 22242152; PMCID: PMC3252290.
      10. Chang H, Fontenay GV, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B. Morphometic analysis of TCGA glioblastoma multiforme. BMC Bioinformatics. 2011 Dec 20; 12:484. PMID: 22185703; PMCID: PMC3271112.
      11. Han J, Chang H, Loss L, Zhang K, Baehner FL, Gray JW, Spellman P, Parvin B. COMPARISON OF SPARSE CODING AND KERNEL METHODS FOR HISTOPATHOLOGICAL CLASSIFICATION OF GLIOBASTOMA MULTIFORME. Proc IEEE Int Symp Biomed Imaging. 2011 Jun 09; 2011:711-714. PMID: 23243485.
        View in: PubMed
      12. Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B. Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 2010 Feb 26; 6(2):e1000684. PMID: 20195492; PMCID: PMC2829039.
      13. Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MH, Parvin B. Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar; 7(1):80-90. PMID: 20150670.
        View in: PubMed
      14. Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B. MORPHOMETRIC SUBTYPING FOR A PANEL OF BREAST CANCER CELL LINES. Proc IEEE Int Symp Biomed Imaging. 2009 Jun 28; 6:791-794. PMID: 20011457.
        View in: PubMed
      15. Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MH. Iterative voting for inference of structural saliency and characterization of subcellular events. IEEE Trans Image Process. 2007 Mar; 16(3):615-23. PMID: 17357723.
        View in: PubMed

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