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Dueber, John

TitleBiological Faculty Engineer
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/643-4616
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hsu TM, Welner DH, Russ ZN, Cervantes B, Prathuri RL, Adams PD, Dueber J. Employing a biochemical protecting group for a sustainable indigo dyeing strategy. Nat Chem Biol. 2018 Mar; 14(3):256-261. PMID: 29309053.
      View in: PubMed
    2. Grewal PS, Modavi C, Russ ZN, Harris NC, Dueber J. Bioproduction of a betalain color palette in Saccharomyces cerevisiae. Metab Eng. 2018 Jan; 45:180-188. PMID: 29247865.
      View in: PubMed
    3. Benz JP, Protzko RJ, Andrich JMS, Bauer S, Dueber J, Somerville CR. Correction to: Identification and characterization of a galacturonic acid transporter from Neurospora crassa and its application for Saccharomyces cerevisiae fermentation processes. Biotechnol Biofuels. 2017; 10:287. PMID: 29213326.
      View in: PubMed
    4. Latimer LN, Dueber J. Iterative optimization of xylose catabolism in Saccharomyces cerevisiae using combinatorial expression tuning. Biotechnol Bioeng. 2017 06; 114(6):1301-1309. PMID: 28165133.
      View in: PubMed
    5. Leal RA, Bischof C, Lee YV, Sawano S, McAtee CC, Latimer LN, Russ ZN, Dueber J, Yu JQ, Sarpong R. Application of a Palladium-Catalyzed C-H Functionalization/Indolization Method to Syntheses of cis-Trikentrin A and Herbindole B. Angew Chem Int Ed Engl. 2016 Sep 19; 55(39):11824-8. PMID: 27570932.
      View in: PubMed
    6. DeLoache WC, Russ ZN, Dueber J. Towards repurposing the yeast peroxisome for compartmentalizing heterologous metabolic pathways. Nat Commun. 2016 Mar 30; 7:11152. PMID: 27025684.
      View in: PubMed
    7. Narcross L, Fossati E, Bourgeois L, Dueber J, Martin VJJ. Microbial Factories for the Production of Benzylisoquinoline Alkaloids. Trends Biotechnol. 2016 Mar; 34(3):228-241. PMID: 26775900.
      View in: PubMed
    8. Chen R, Rishi HS, Potapov V, Yamada MR, Yeh VJ, Chow T, Cheung CL, Jones AT, Johnson TD, Keating AE, DeLoache WC, Dueber J. A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy. ACS Synth Biol. 2015 Nov 20; 4(11):1205-16. PMID: 26155738; PMCID: PMC4654675 [Available on 11/20/16].
    9. DeLoache WC, Russ ZN, Narcross L, Gonzales AM, Martin VJ, Dueber J. An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose. Nat Chem Biol. 2015 Jul; 11(7):465-71. PMID: 25984720.
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    10. Lee ME, DeLoache WC, Cervantes B, Dueber J. A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly. ACS Synth Biol. 2015 Sep 18; 4(9):975-86. PMID: 25871405.
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    11. Zalatan JG, Lee ME, Almeida R, Gilbert LA, Whitehead EH, La Russa M, Tsai JC, Weissman JS, Dueber J, Qi LS, Lim WA. Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds. Cell. 2015 Jan 15; 160(1-2):339-50. PMID: 25533786; PMCID: PMC4297522.
    12. Ryan OW, Skerker JM, Maurer MJ, Li X, Tsai JC, Poddar S, Lee ME, DeLoache W, Dueber J, Arkin AP, Cate JH. Selection of chromosomal DNA libraries using a multiplex CRISPR system. Elife. 2014 Aug 19; 3. PMID: 25139909; PMCID: PMC4161972.
    13. Latimer LN, Lee ME, Medina-Cleghorn D, Kohnz RA, Nomura DK, Dueber J. Employing a combinatorial expression approach to characterize xylose utilization in Saccharomyces cerevisiae. Metab Eng. 2014 Sep; 25:20-9. PMID: 24930894.
      View in: PubMed
    14. Hsiao V, de los Santos EL, Whitaker WR, Dueber J, Murray RM. Design and implementation of a biomolecular concentration tracker. ACS Synth Biol. 2015 Feb 20; 4(2):150-61. PMID: 24847683; PMCID: PMC4384833.
    15. Whitaker WR, Lee H, Arkin AP, Dueber J. Avoidance of truncated proteins from unintended ribosome binding sites within heterologous protein coding sequences. ACS Synth Biol. 2015 Mar 20; 4(3):249-57. PMID: 24931615.
      View in: PubMed
    16. Russ ZN, Dueber J. Cell-free protein synthesis: search for the happy middle. Biotechnol J. 2014 May; 9(5):593-4. PMID: 24644248.
      View in: PubMed
    17. Benz JP, Protzko RJ, Andrich JM, Bauer S, Dueber J, Somerville CR. Identification and characterization of a galacturonic acid transporter from Neurospora crassa and its application for Saccharomyces cerevisiae fermentation processes. Biotechnol Biofuels. 2014 Feb 06; 7(1):20. PMID: 24502254; PMCID: PMC3933009.
    18. Lee ME, Aswani A, Han AS, Tomlin CJ, Dueber J. Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay. Nucleic Acids Res. 2013 Dec; 41(22):10668-78. PMID: 24038353; PMCID: PMC3905865.
    19. DeLoache WC, Dueber J. Compartmentalizing metabolic pathways in organelles. Nat Biotechnol. 2013 Apr; 31(4):320-1. PMID: 23563429.
      View in: PubMed
    20. Whitaker WR, Davis SA, Arkin AP, Dueber J. Engineering robust control of two-component system phosphotransfer using modular scaffolds. Proc Natl Acad Sci U S A. 2012 Oct 30; 109(44):18090-5. PMID: 23071327; PMCID: PMC3497815.
    21. Conrado RJ, Wu GC, Boock JT, Xu H, Chen SY, Lebar T, Turnšek J, Tomšic N, Avbelj M, Gaber R, Koprivnjak T, Mori J, Glavnik V, Vovk I, Bencina M, Hodnik V, Anderluh G, Dueber J, Jerala R, DeLisa MP. DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic Acids Res. 2012 Feb; 40(4):1879-89. PMID: 22021385; PMCID: PMC3287197.
    22. Lee H, DeLoache WC, Dueber J. Spatial organization of enzymes for metabolic engineering. Metab Eng. 2012 May; 14(3):242-51. PMID: 21946160.
      View in: PubMed
    23. Whitaker WR, Dueber J. Metabolic pathway flux enhancement by synthetic protein scaffolding. Methods Enzymol. 2011; 497:447-68. PMID: 21601098.
      View in: PubMed
    24. Tipton KA, Dueber J. Shaking up genome engineering. Nat Biotechnol. 2010 Aug; 28(8):812-3. PMID: 20697406.
      View in: PubMed
    25. Moon TS, Dueber J, Shiue E, Prather KL. Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coli. Metab Eng. 2010 May; 12(3):298-305. PMID: 20117231.
      View in: PubMed
    26. Anderson JC, Dueber J, Leguia M, Wu GC, Goler JA, Arkin AP, Keasling JD. BglBricks: A flexible standard for biological part assembly. J Biol Eng. 2010 Jan 20; 4(1):1. PMID: 20205762; PMCID: PMC2822740.
    27. Dueber J, Wu GC, Malmirchegini GR, Moon TS, Petzold CJ, Ullal AV, Prather KL, Keasling JD. Synthetic protein scaffolds provide modular control over metabolic flux. Nat Biotechnol. 2009 Aug; 27(8):753-9. PMID: 19648908.
      View in: PubMed
    28. Sallee NA, Rivera GM, Dueber J, Vasilescu D, Mullins RD, Mayer BJ, Lim WA. The pathogen protein EspF(U) hijacks actin polymerization using mimicry and multivalency. Nature. 2008 Aug 21; 454(7207):1005-8. PMID: 18650806; PMCID: PMC2749708.
    29. Dueber J, Mirsky EA, Lim WA. Engineering synthetic signaling proteins with ultrasensitive input/output control. Nat Biotechnol. 2007 Jun; 25(6):660-2. PMID: 17515908.
      View in: PubMed
    30. Dueber J, Yeh BJ, Bhattacharyya RP, Lim WA. Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitry. Curr Opin Struct Biol. 2004 Dec; 14(6):690-9. PMID: 15582393.
      View in: PubMed
    31. Dueber J, Yeh BJ, Chak K, Lim WA. Reprogramming control of an allosteric signaling switch through modular recombination. Science. 2003 Sep 26; 301(5641):1904-8. PMID: 14512628.
      View in: PubMed

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