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    Banfield, Jillian

    TitleGeological Scientist Faculty
    SchoolLawrence Berkeley National Lab
    DepartmentClimate & Ecosystems
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/642-9488
    vCardDownload vCard

      Collapse Bibliographic 
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield J, Hugenholtz P, Woyke T. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017 Aug 08; 35(8):725-731. PMID: 28787424.
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      2. Finstad KM, Probst AJ, Thomas BC, Andersen GL, Demergasso C, Echeverría A, Amundson RG, Banfield J. Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics. Front Microbiol. 2017; 8:1435. PMID: 28804480.
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      3. Olm MR, Brown CT, Brooks B, Banfield J. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication. ISME J. 2017 Jul 25. PMID: 28742071.
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      4. Xiong W, Brown CT, Morowitz MJ, Banfield J, Hettich RL. Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life. Microbiome. 2017 Jul 10; 5(1):72. PMID: 28693612.
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      5. Hu P, Dubinsky EA, Probst AJ, Wang J, Sieber CMK, Tom LM, Gardinali PR, Banfield J, Atlas RM, Andersen GL. Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proc Natl Acad Sci U S A. 2017 Jul 11; 114(28):7432-7437. PMID: 28652349.
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      6. Paul BG, Burstein D, Castelle CJ, Handa S, Arambula D, Czornyj E, Thomas BC, Ghosh P, Miller JF, Banfield J, Valentine DL. Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea. Nat Microbiol. 2017 Apr 03; 2:17045. PMID: 28368387.
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      7. Hernsdorf AW, Amano Y, Miyakawa K, Ise K, Suzuki Y, Anantharaman K, Probst A, Burstein D, Thomas BC, Banfield J. Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments. ISME J. 2017 Aug; 11(8):1915-1929. PMID: 28350393.
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      8. Olm MR, Butterfield CN, Copeland A, Boles TC, Thomas BC, Banfield J. The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis. MBio. 2017 Feb 21; 8(1). PMID: 28223457.
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      9. Rahman SF, Kantor RS, Huddy R, Thomas BC, van Zyl AW, Harrison STL, Banfield J. Genome-resolved metagenomics of a bioremediation system for degradation of thiocyanate in mine water containing suspended solid tailings. Microbiologyopen. 2017 Jun; 6(3). PMID: 28215046.
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      10. Kantor RS, Huddy RJ, Iyer R, Thomas BC, Brown CT, Anantharaman K, Tringe S, Hettich RL, Harrison ST, Banfield J. Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation. Environ Sci Technol. 2017 Mar 07; 51(5):2944-2953. PMID: 28139919.
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      11. Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield J, Schramm A, Baker BJ, Spang A, Ettema TJ. Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature. 2017 01 19; 541(7637):353-358. PMID: 28077874.
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      12. Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield J. Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates. Genome Res. 2017 Apr; 27(4):601-612. PMID: 28073918.
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      13. Castelle CJ, Brown CT, Thomas BC, Williams KH, Banfield J. Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation. Sci Rep. 2017 Jan 09; 7:40101. PMID: 28067254.
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      14. Burstein D, Harrington LB, Strutt SC, Probst AJ, Anantharaman K, Thomas BC, Doudna JA, Banfield J. New CRISPR-Cas systems from uncultivated microbes. Nature. 2017 02 09; 542(7640):237-241. PMID: 28005056.
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      15. Tester CC, Aloni S, Gilbert B, Banfield J. Short- and Long-Range Attractive Forces That Influence the Structure of Montmorillonite Osmotic Hydrates. Langmuir. 2016 Nov 22; 32(46):12039-12046. PMID: 27933879.
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      16. Butterfield CN, Li Z, Andeer PF, Spaulding S, Thomas BC, Singh A, Hettich RL, Suttle KB, Probst AJ, Tringe SG, Northen T, Pan C, Banfield J. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PeerJ. 2016; 4:e2687. PMID: 27843720.
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      17. Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield J. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat Commun. 2016 Oct 24; 7:13219. PMID: 27774985.
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      18. Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield J. Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations. Environ Microbiol. 2017 Feb; 19(2):459-474. PMID: 27112493.
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      19. Raveh-Sadka T, Firek B, Sharon I, Baker R, Brown CT, Thomas BC, Morowitz MJ, Banfield J. Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants. ISME J. 2016 Dec; 10(12):2817-2830. PMID: 27258951.
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      20. Licina D, Bhangar S, Brooks B, Baker R, Firek B, Tang X, Morowitz MJ, Banfield J, Nazaroff WW. Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit. PLoS One. 2016; 11(5):e0154991. PMID: 27175913; PMCID: PMC4866781.
      21. Long PE, Williams KH, Hubbard SS, Banfield J. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes. Trends Microbiol. 2016 Aug; 24(8):600-610. PMID: 27156744.
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      22. Wrighton KC, Castelle CJ, Varaljay VA, Satagopan S, Brown CT, Wilkins MJ, Thomas BC, Sharon I, Williams KH, Tabita FR, Banfield J. RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria. ISME J. 2016 Nov; 10(11):2702-2714. PMID: 27137126.
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      23. Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, Thomas BC, Banfield J. A new view of the tree of life. Nat Microbiol. 2016 Apr 11; 1:16048. PMID: 27572647.
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      24. Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, Banfield J. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Front Microbiol. 2016; 7:238. PMID: 26973616; PMCID: PMC4776211.
      25. Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield J. Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems. Nat Commun. 2016 Feb 03; 7:10613. PMID: 26837824; PMCID: PMC4742961.
      26. Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Williams KH, Banfield J. Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum. PeerJ. 2016; 4:e1607. PMID: 26844018; PMCID: PMC4736985.
      27. Varaljay VA, Satagopan S, North JA, Witte B, Dourado MN, Anantharaman K, Arbing MA, Hoeft McCann S, Oremland RS, Banfield J, Wrighton KC, Tabita FR. Functional metagenomic selection of ribulose 1, 5-bisphosphate carboxylase/oxygenase from uncultivated bacteria. Environ Microbiol. 2016 Apr; 18(4):1187-99. PMID: 26617072.
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      28. Hu P, Tom L, Singh A, Thomas BC, Baker BJ, Piceno YM, Andersen GL, Banfield J. Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs. MBio. 2016 Jan 19; 7(1):e01669-15. PMID: 26787827; PMCID: PMC4725000.
      29. Fakra SC, Luef B, Castelle CJ, Mullin SW, Williams KH, Marcus MA, Schichnes D, Banfield J. Correlative cryogenic spectro-microscopy to investigate Selenium bioreduction products. Environ Sci Technol. 2015 Sep 29. PMID: 26371540.
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      30. Sun CL, Thomas BC, Barrangou R, Banfield J. Metagenomic reconstructions of bacterial CRISPR loci constrain population histories. ISME J. 2016 Apr; 10(4):858-70. PMID: 26394009; PMCID: PMC4796926 [Available on 04/01/17].
      31. Zhang H, Waychunas GA, Banfield J. Molecular Dynamics Simulation Study of the Early Stages of Nucleation of Iron Oxyhydroxide Nanoparticles in Aqueous Solutions. J Phys Chem B. 2015 Aug 20; 119(33):10630-42. PMID: 26222332.
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      32. De Yoreo JJ, Gilbert PU, Sommerdijk NA, Penn RL, Whitelam S, Joester D, Zhang H, Rimer JD, Navrotsky A, Banfield J, Wallace AF, Michel FM, Meldrum FC, Cölfen H, Dove PM. CRYSTAL GROWTH. Crystallization by particle attachment in synthetic, biogenic, and geologic environments. Science. 2015 Jul 31; 349(6247):aaa6760. PMID: 26228157.
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      33. Kantor RS, van Zyl AW, van Hille RP, Thomas BC, Harrison ST, Banfield J. Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics. Environ Microbiol. 2015 Dec; 17(12):4929-41. PMID: 26031303.
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      34. Hug LA, Thomas BC, Sharon I, Brown CT, Sharma R, Hettich RL, Wilkins MJ, Williams KH, Singh A, Banfield J. Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages. Environ Microbiol. 2016 Jan; 18(1):159-73. PMID: 26033198.
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      35. Young JC, Pan C, Adams RM, Brooks B, Banfield J, Morowitz MJ, Hettich RL. Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case. Proteomics. 2015 Oct; 15(20):3463-73. PMID: 26077811; PMCID: PMC4607655 [Available on 10/01/16].
      36. Brooks B, Mueller RS, Young JC, Morowitz MJ, Hettich RL, Banfield J. Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant. Front Microbiol. 2015; 6:654. PMID: 26191049; PMCID: PMC4487087.
      37. Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, Wilkins MJ, Wrighton KC, Williams KH, Banfield J. Unusual biology across a group comprising more than 15% of domain Bacteria. Nature. 2015 Jul 09; 523(7559):208-11. PMID: 26083755.
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      38. Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield J. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. ISME J. 2015 Dec; 9(12):2697-711. PMID: 25918833; PMCID: PMC4817636 [Available on 12/01/16].
      39. Paez-Espino D, Sharon I, Morovic W, Stahl B, Thomas BC, Barrangou R, Banfield J. CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus. MBio. 2015 Apr 21; 6(2). PMID: 25900652; PMCID: PMC4453577.
      40. Emerson JB, Thomas BC, Alvarez W, Banfield J. Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla. Environ Microbiol. 2016 Jun; 18(6):1686-703. PMID: 25727367.
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      41. Aliaga Goltsman DS, Comolli LR, Thomas BC, Banfield J. Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities. ISME J. 2015 Mar 17; 9(4):1014-23. PMID: 25361394; PMCID: PMC4817702.
      42. Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield J. Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development. Elife. 2015 Mar 03; 4. PMID: 25735037; PMCID: PMC4384745.
      43. Luef B, Frischkorn KR, Wrighton KC, Holman HY, Birarda G, Thomas BC, Singh A, Williams KH, Siegerist CE, Tringe SG, Downing KH, Comolli LR, Banfield J. Diverse uncultivated ultra-small bacterial cells in groundwater. Nat Commun. 2015 Feb 27; 6:6372. PMID: 25721682.
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      44. Castelle CJ, Wrighton KC, Thomas BC, Hug LA, Brown CT, Wilkins MJ, Frischkorn KR, Tringe SG, Singh A, Markillie LM, Taylor RC, Williams KH, Banfield J. Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. Curr Biol. 2015 Mar 16; 25(6):690-701. PMID: 25702576.
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      45. Sharon I, Kertesz M, Hug LA, Pushkarev D, Blauwkamp TA, Castelle CJ, Amirebrahimi M, Thomas BC, Burstein D, Tringe SG, Williams KH, Banfield J. Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. Genome Res. 2015 Apr; 25(4):534-43. PMID: 25665577; PMCID: PMC4381525.
      46. Hug LA, Thomas BC, Brown CT, Frischkorn KR, Williams KH, Tringe SG, Banfield J. Aquifer environment selects for microbial species cohorts in sediment and groundwater. ISME J. 2015 Aug; 9(8):1846-56. PMID: 25647349; PMCID: PMC4511941.
      47. Tully BJ, Emerson JB, Andrade K, Brocks JJ, Allen EE, Banfield J, Heidelberg KB. De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. Archaea. 2015; 2015:875784. PMID: 25709557; PMCID: PMC4330952.
      48. Justice NB, Norman A, Brown CT, Singh A, Thomas BC, Banfield J. Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms. BMC Genomics. 2014 Dec 15; 15:1107. PMID: 25511286; PMCID: PMC4378227.
      49. Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, Heise M, Schintlmeister A, Schmid M, Wagner M, Gribaldo S, Banfield J, Moissl-Eichinger C. Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface. Nat Commun. 2014 Nov 26; 5:5497. PMID: 25425419.
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      50. Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield J. Impacts of ionic strength on three-dimensional nanoparticle aggregate structure and consequences for environmental transport and deposition. Environ Sci Technol. 2014 Dec 02; 48(23):13703-10. PMID: 25380400.
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      51. Xiong W, Giannone RJ, Morowitz MJ, Banfield J, Hettich RL. Development of an enhanced metaproteomic approach for deepening the microbiome characterization of the human infant gut. J Proteome Res. 2015 Jan 02; 14(1):133-41. PMID: 25350865; PMCID: PMC4286196.
      52. Legg BA, Zhu M, Comolli LR, Gilbert B, Banfield J. Determination of the three-dimensional structure of ferrihydrite nanoparticle aggregates. Langmuir. 2014 Aug 26; 30(33):9931-40. PMID: 25079430.
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      53. Li Z, Wang Y, Yao Q, Justice NB, Ahn TH, Xu D, Hettich RL, Banfield J, Pan C. Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. Nat Commun. 2014 Jul 25; 5:4405. PMID: 25059763; PMCID: PMC4279252.
      54. Comolli LR, Banfield J. Inter-species interconnections in acid mine drainage microbial communities. Front Microbiol. 2014; 5:367. PMID: 25120533; PMCID: PMC4110969.
      55. Mosier AC, Li Z, Thomas BC, Hettich RL, Pan C, Banfield J. Elevated temperature alters proteomic responses of individual organisms within a biofilm community. ISME J. 2015 Jan; 9(1):180-94. PMID: 25050524; PMCID: PMC4274423.
      56. Zhang H, Banfield J. Structural characteristics and mechanical and thermodynamic properties of nanocrystalline TiO2. Chem Rev. 2014 Oct 08; 114(19):9613-44. PMID: 25026219.
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      57. Zhang H, De Yoreo JJ, Banfield J. A unified description of attachment-based crystal growth. ACS Nano. 2014 Jul 22; 8(7):6526-30. PMID: 25000275.
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      58. Justice NB, Li Z, Wang Y, Spaudling SE, Mosier AC, Hettich RL, Pan C, Banfield J. (15)N- and (2)H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity. Environ Microbiol. 2014 Oct; 16(10):3224-37. PMID: 24750948.
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      59. Hanke A, Hamann E, Sharma R, Geelhoed JS, Hargesheimer T, Kraft B, Meyer V, Lenk S, Osmers H, Wu R, Makinwa K, Hettich RL, Banfield J, Tegetmeyer HE, Strous M. Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat. Front Microbiol. 2014; 5:231. PMID: 24904545; PMCID: PMC4032931.
      60. Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield J. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environ Microbiol. 2015 Mar; 17(3):622-36. PMID: 24674078.
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      61. Nielsen MH, Li D, Zhang H, Aloni S, Han TY, Frandsen C, Seto J, Banfield J, Cölfen H, De Yoreo JJ. Investigating processes of nanocrystal formation and transformation via liquid cell TEM. Microsc Microanal. 2014 Apr; 20(2):425-36. PMID: 24625923.
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      62. Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield J. Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J. 2014 Jul; 8(7):1452-63. PMID: 24621521; PMCID: PMC4069391.
      63. Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield J. Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome. 2014 Jan 28; 2(1):1. PMID: 24468033; PMCID: PMC4392516.
      64. Pan C, Banfield J. Quantitative metaproteomics: functional insights into microbial communities. Methods Mol Biol. 2014; 1096:231-40. PMID: 24515373.
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      65. Brown CT, Sharon I, Thomas BC, Castelle CJ, Morowitz MJ, Banfield J. Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life. Microbiome. 2013 Dec 17; 1(1):30. PMID: 24451181; PMCID: PMC4177395.
      66. Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield J, Allen EE. Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. ISME J. 2014 May; 8(5):979-90. PMID: 24335829; PMCID: PMC3996697.
      67. Sharon I, Banfield J. Microbiology. Genomes from metagenomics. Science. 2013 Nov 29; 342(6162):1057-8. PMID: 24288324.
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      68. Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield J. Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio. 2013 Oct 22; 4(5):e00708-13. PMID: 24149512; PMCID: PMC3812714.
      69. Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield J, Ley RE. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife. 2013 Oct 01; 2:e01102. PMID: 24137540; PMCID: PMC3787301.
      70. Emerson JB, Thomas BC, Andrade K, Heidelberg KB, Banfield J. New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake. Appl Environ Microbiol. 2013 Nov; 79(21):6755-64. PMID: 23995931; PMCID: PMC3811486.
      71. Wallace AF, Hedges LO, Fernandez-Martinez A, Raiteri P, Gale JD, Waychunas GA, Whitelam S, Banfield J, De Yoreo JJ. Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions. Science. 2013 Aug 23; 341(6148):885-9. PMID: 23970697.
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      72. Zhang H, Finnegan MP, Banfield J. Titania nanorods curve to lower their energy. Nanoscale. 2013 Aug 07; 5(15):6742-6. PMID: 23794056.
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      73. Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield J. Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome. 2013 Aug 05; 1(1):22. PMID: 24450983; PMCID: PMC3971608.
      74. Yelton AP, Comolli LR, Justice NB, Castelle C, Denef VJ, Thomas BC, Banfield J. Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea. BMC Genomics. 2013 Jul 17; 14:485. PMID: 23865623; PMCID: PMC3750248.
      75. Emerson JB, Andrade K, Thomas BC, Norman A, Allen EE, Heidelberg KB, Banfield J. Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia. Archaea. 2013; 2013:370871. PMID: 23853523; PMCID: PMC3703381.
      76. Yelton AP, Williams KH, Fournelle J, Wrighton KC, Handley KM, Banfield J. Vanadate and acetate biostimulation of contaminated sediments decreases diversity, selects for specific taxa, and decreases aqueous V5+ concentration. Environ Sci Technol. 2013 Jun 18; 47(12):6500-9. PMID: 23713472.
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      77. Fischer CR, Bowen BP, Pan C, Northen TR, Banfield J. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. ACS Chem Biol. 2013 Aug 16; 8(8):1755-63. PMID: 23713674.
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      78. Goltsman DS, Dasari M, Thomas BC, Shah MB, VerBerkmoes NC, Hettich RL, Banfield J. New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species "Leptospirillum group IV UBA BS". Appl Environ Microbiol. 2013 Sep; 79(17):5384-93. PMID: 23645189; PMCID: PMC3753937.
      79. Podell S, Ugalde JA, Narasingarao P, Banfield J, Heidelberg KB, Allen EE. Assembly-driven community genomics of a hypersaline microbial ecosystem. PLoS One. 2013; 8(4):e61692. PMID: 23637883; PMCID: PMC3630111.
      80. Moreau JW, Fournelle JH, Banfield J. Quantifying heavy metals sequestration by sulfate-reducing bacteria in an Acid mine drainage-contaminated natural wetland. Front Microbiol. 2013; 4:43. PMID: 23487496; PMCID: PMC3594707.
      81. Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield J. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. MBio. 2013 Mar 12; 4(2):e00484-12. PMID: 23481603; PMCID: PMC3604775.
      82. Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield J, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber AP. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science. 2013 Mar 08; 339(6124):1207-10. PMID: 23471408.
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      83. Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield J, Long PE, Lipton MS. Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface. PLoS One. 2013; 8(3):e57819. PMID: 23472107; PMCID: PMC3589452.
      84. Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield J. Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. PLoS One. 2013; 8(2):e56018. PMID: 23405248; PMCID: PMC3566076.
      85. Paez-Espino D, Morovic W, Sun CL, Thomas BC, Ueda K, Stahl B, Barrangou R, Banfield J. Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nat Commun. 2013; 4:1430. PMID: 23385575.
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