Garbe, James

TitleBiologist Scientist/Engr
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Jokela TA, Engelsen AST, Rybicka A, Pelissier Vatter FA, Garbe J, Miyano M, Tiron C, Ferariu D, Akslen LA, Stampfer MR, Lorens JB, LaBarge MA. Microenvironment-Induced Non-sporadic Expression of the AXL and cKIT Receptors Are Related to Epithelial Plasticity and Drug Resistance. Front Cell Dev Biol. 2018; 6:41. PMID: 29719832.
      View in: PubMed
    2. Glorieux C, Sandoval JM, Fattaccioli A, Dejeans N, Garbe J, Dieu M, Verrax J, Renard P, Huang P, Calderon PB. Chromatin remodeling regulates catalase expression during cancer cells adaptation to chronic oxidative stress. Free Radic Biol Med. 2016 10; 99:436-450. PMID: 27591797.
      View in: PubMed
    3. Hines WC, Kuhn I, Thi K, Chu B, Stanford-Moore G, Sampayo R, Garbe J, Stampfer M, Borowsky AD, Bissell MJ. 184AA3: a xenograft model of ER+ breast adenocarcinoma. Breast Cancer Res Treat. 2016 Jan; 155(1):37-52. PMID: 26661596; PMCID: PMC4706787 [Available on 01/01/17].
    4. Lowe R, Overhoff MG, Ramagopalan SV, Garbe J, Koh J, Stampfer MR, Beach DH, Rakyan VK, Bishop CL. The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans. Genome Biol. 2015 Sep 17; 16:194. PMID: 26381124; PMCID: PMC4574115.
    5. Todhunter ME, Jee NY, Hughes AJ, Coyle MC, Cerchiari A, Farlow J, Garbe J, LaBarge MA, Desai TA, Gartner ZJ. Programmed synthesis of three-dimensional tissues. Nat Methods. 2015 Oct; 12(10):975-81. PMID: 26322836; PMCID: PMC4589502.
    6. Lanigan F, Brien GL, Fan Y, Madden SF, Jerman E, Maratha A, Aloraifi F, Hokamp K, Dunne EJ, Lohan AJ, Flanagan L, Garbe J, Stampfer MR, Fridberg M, Jirstrom K, Quinn CM, Loftus B, Gallagher WM, Geraghty J, Bracken AP. Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients. FEBS J. 2015 Sep; 282(18):3455-73. PMID: 26094870.
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    7. Lee JK, Garbe J, Vrba L, Miyano M, Futscher BW, Stampfer MR, LaBarge MA. Age and the means of bypassing stasis influence the intrinsic subtype of immortalized human mammary epithelial cells. Front Cell Dev Biol. 2015; 3:13. PMID: 25815289; PMCID: PMC4356162.
    8. Cerchiari AE, Garbe J, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. Proc Natl Acad Sci U S A. 2015 Feb 17; 112(7):2287-92. PMID: 25633040; PMCID: PMC4343104.
    9. Vrba L, Garbe J, Stampfer MR, Futscher BW. A lincRNA connected to cell mortality and epigenetically-silenced in most common human cancers. Epigenetics. 2015; 10(11):1074-83. PMID: 26646903; PMCID: PMC4844203.
    10. Cerchiari A, Garbe J, Todhunter ME, Jee NY, Pinney JR, LaBarge MA, Desai TA, Gartner ZJ. Formation of spatially and geometrically controlled three-dimensional tissues in soft gels by sacrificial micromolding. Tissue Eng Part C Methods. 2015 Jun; 21(6):541-7. PMID: 25351430; PMCID: PMC4442595.
    11. Pelissier FA, Garbe J, Ananthanarayanan B, Miyano M, Lin C, Jokela T, Kumar S, Stampfer MR, Lorens JB, LaBarge MA. Age-related dysfunction in mechanotransduction impairs differentiation of human mammary epithelial progenitors. Cell Rep. 2014 Jun 26; 7(6):1926-39. PMID: 24910432; PMCID: PMC4122253.
    12. Garbe J, Vrba L, Sputova K, Fuchs L, Novak P, Brothman AR, Jackson M, Chin K, LaBarge MA, Watts G, Futscher BW, Stampfer MR. Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations. Cell Cycle. 2014; 13(21):3423-35. PMID: 25485586.
      View in: PubMed
    13. Overhoff MG, Garbe J, Koh J, Stampfer MR, Beach DH, Bishop CL. Cellular senescence mediated by p16INK4A-coupled miRNA pathways. Nucleic Acids Res. 2014 Feb; 42(3):1606-18. PMID: 24217920; PMCID: PMC3919591.
    14. Sputova K, Garbe J, Pelissier FA, Chang E, Stampfer MR, LaBarge MA. Aging phenotypes in cultured normal human mammary epithelial cells are correlated with decreased telomerase activity independent of telomere length. Genome Integr. 2013 May 29; 4(1):4. PMID: 23718190; PMCID: PMC3672013.
    15. Labarge MA, Garbe J, Stampfer MR. Processing of human reduction mammoplasty and mastectomy tissues for cell culture. J Vis Exp. 2013 Jan 03; (71). PMID: 23328888; PMCID: PMC3582686.
    16. Novak P, Stampfer MR, Munoz-Rodriguez JL, Garbe J, Ehrich M, Futscher BW, Jensen TJ. Cell-type specific DNA methylation patterns define human breast cellular identity. PLoS One. 2012; 7(12):e52299. PMID: 23284978; PMCID: PMC3527522.
    17. Garbe J, Pepin F, Pelissier FA, Sputova K, Fridriksdottir AJ, Guo DE, Villadsen R, Park M, Petersen OW, Borowsky AD, Stampfer MR, Labarge MA. Accumulation of multipotent progenitors with a basal differentiation bias during aging of human mammary epithelia. Cancer Res. 2012 Jul 15; 72(14):3687-701. PMID: 22552289; PMCID: PMC3399034.
    18. Vrba L, Garbe J, Stampfer MR, Futscher BW. Epigenetic regulation of normal human mammary cell type-specific miRNAs. Genome Res. 2011 Dec; 21(12):2026-37. PMID: 21873453; PMCID: PMC3227093.
    19. Chanson L, Brownfield D, Garbe J, Kuhn I, Stampfer MR, Bissell MJ, LaBarge MA. Self-organization is a dynamic and lineage-intrinsic property of mammary epithelial cells. Proc Natl Acad Sci U S A. 2011 Feb 22; 108(8):3264-9. PMID: 21300877; PMCID: PMC3044373.
    20. Bishop CL, Bergin AM, Fessart D, Borgdorff V, Hatzimasoura E, Garbe J, Stampfer MR, Koh J, Beach DH. Primary cilium-dependent and -independent Hedgehog signaling inhibits p16(INK4A). Mol Cell. 2010 Nov 24; 40(4):533-47. PMID: 21095584.
      View in: PubMed
    21. Lapuk A, Marr H, Jakkula L, Pedro H, Bhattacharya S, Purdom E, Hu Z, Simpson K, Pachter L, Durinck S, Wang N, Parvin B, Fontenay G, Speed T, Garbe J, Stampfer M, Bayandorian H, Dorton S, Clark TA, Schweitzer A, Wyrobek A, Feiler H, Spellman P, Conboy J, Gray JW. Exon-level microarray analyses identify alternative splicing programs in breast cancer. Mol Cancer Res. 2010 Jul; 8(7):961-74. PMID: 20605923; PMCID: PMC2911965.
    22. Vrba L, Jensen TJ, Garbe J, Heimark RL, Cress AE, Dickinson S, Stampfer MR, Futscher BW. Role for DNA methylation in the regulation of miR-200c and miR-141 expression in normal and cancer cells. PLoS One. 2010 Jan 13; 5(1):e8697. PMID: 20084174; PMCID: PMC2805718.
    23. Garbe J, Bhattacharya S, Merchant B, Bassett E, Swisshelm K, Feiler HS, Wyrobek AJ, Stampfer MR. Molecular distinctions between stasis and telomere attrition senescence barriers shown by long-term culture of normal human mammary epithelial cells. Cancer Res. 2009 Oct 01; 69(19):7557-68. PMID: 19773443; PMCID: PMC2782785.
    24. Novak P, Jensen TJ, Garbe J, Stampfer MR, Futscher BW. Stepwise DNA methylation changes are linked to escape from defined proliferation barriers and mammary epithelial cell immortalization. Cancer Res. 2009 Jun 15; 69(12):5251-8. PMID: 19509227; PMCID: PMC2697259.
    25. Sudo H, Garbe J, Stampfer MR, Barcellos-Hoff MH, Kronenberg A. Karyotypic instability and centrosome aberrations in the progeny of finite life-span human mammary epithelial cells exposed to sparsely or densely ionizing radiation. Radiat Res. 2008 Jul; 170(1):23-32. PMID: 18582160.
      View in: PubMed
    26. Garbe J, Holst CR, Bassett E, Tlsty T, Stampfer MR. Inactivation of p53 function in cultured human mammary epithelial cells turns the telomere-length dependent senescence barrier from agonescence into crisis. Cell Cycle. 2007 Aug 01; 6(15):1927-36. PMID: 17671422.
      View in: PubMed
    27. Beliveau A, Bassett E, Lo AT, Garbe J, Rubio MA, Bissell MJ, Campisi J, Yaswen P. p53-dependent integration of telomere and growth factor deprivation signals. Proc Natl Acad Sci U S A. 2007 Mar 13; 104(11):4431-6. PMID: 17360541; PMCID: PMC1838618.
    28. Li Y, Pan J, Li JL, Lee JH, Tunkey C, Saraf K, Garbe J, Whitley MZ, Jelinsky SA, Stampfer MR, Haney SA. Transcriptional changes associated with breast cancer occur as normal human mammary epithelial cells overcome senescence barriers and become immortalized. Mol Cancer. 2007 Jan 18; 6:7. PMID: 17233903; PMCID: PMC1784108.
    29. Goldstein JC, Rodier F, Garbe J, Stampfer MR, Campisi J. Caspase-independent cytochrome c release is a sensitive measure of low-level apoptosis in cell culture models. Aging Cell. 2005 Aug; 4(4):217-22. PMID: 16026336.
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    30. Nijjar T, Bassett E, Garbe J, Takenaka Y, Stampfer MR, Gilley D, Yaswen P. Accumulation and altered localization of telomere-associated protein TRF2 in immortally transformed and tumor-derived human breast cells. Oncogene. 2005 May 05; 24(20):3369-76. PMID: 15735711.
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    31. Strunnikova M, Schagdarsurengin U, Kehlen A, Garbe J, Stampfer MR, Dammann R. Chromatin inactivation precedes de novo DNA methylation during the progressive epigenetic silencing of the RASSF1A promoter. Mol Cell Biol. 2005 May; 25(10):3923-33. PMID: 15870267; PMCID: PMC1087733.
    32. Chin K, de Solorzano CO, Knowles D, Jones A, Chou W, Rodriguez EG, Kuo WL, Ljung BM, Chew K, Myambo K, Miranda M, Krig S, Garbe J, Stampfer M, Yaswen P, Gray JW, Lockett SJ. In situ analyses of genome instability in breast cancer. Nat Genet. 2004 Sep; 36(9):984-8. PMID: 15300252.
      View in: PubMed
    33. Stampfer MR, Garbe J, Nijjar T, Wigington D, Swisshelm K, Yaswen P. Loss of p53 function accelerates acquisition of telomerase activity in indefinite lifespan human mammary epithelial cell lines. Oncogene. 2003 Aug 14; 22(34):5238-51. PMID: 12917625.
      View in: PubMed

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