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Chang, Hang

TitleComputer Research Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/495-2262
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Pelissier Vatter FA, Schapiro D, Chang H, Borowsky AD, Lee JK, Parvin B, Stampfer MR, LaBarge MA, Bodenmiller B, Lorens JB. High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia. Cell Rep. 2018 Apr 24; 23(4):1205-1219. PMID: 29694896.
      View in: PubMed
    2. Xia Y, Ji Z, Krylov A, Chang H, Cai W. Machine Learning in Multimodal Medical Imaging. Biomed Res Int. 2017; 2017:1278329. PMID: 28357398.
      View in: PubMed
    3. Chang H, Han J, Zhong C, Snijders AM, Mao JH. Unsupervised Transfer Learning via Multi-Scale Convolutional Sparse Coding for Biomedical Applications. IEEE Trans Pattern Anal Mach Intell. 2018 May; 40(5):1182-1194. PMID: 28129148.
      View in: PubMed
    4. Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H. Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Med Image Comput Comput Assist Interv. 2016 Oct; 9900:72-80. PMID: 28018994.
      View in: PubMed
    5. Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H. When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections. Med Image Anal. 2017 Jan; 35:530-543. PMID: 27644083.
      View in: PubMed
    6. Cheng Q, Bilgin CC, Fontenay G, Chang H, Henderson M, Han J, Parvin B. Erratum: Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density. Sci Rep. 2016 08 24; 6:31680. PMID: 27555341.
      View in: PubMed
    7. Cheng Q, Bilgin CC, Fontenay G, Chang H, Henderson M, Han J, Parvin B. Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density. Sci Rep. 2016 07 07; 6:28987. PMID: 27383056.
      View in: PubMed
    8. Han J, Fontenay GV, Wang Y, Mao JH, Chang H. PHENOTYPIC CHARACTERIZATION OF BREAST INVASIVE CARCINOMA VIA TRANSFERABLE TISSUE MORPHOMETRIC PATTERNS LEARNED FROM GLIOBLASTOMA MULTIFORME. Proc IEEE Int Symp Biomed Imaging. 2016 Apr; 2016:1025-1028. PMID: 27390615.
      View in: PubMed
    9. Bilgin CC, Fontenay G, Cheng Q, Chang H, Han J, Parvin B. BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 2016; 11(3):e0148379. PMID: 26978075; PMCID: PMC4792475.
    10. Zhou Y, Chang H, Barner KE, Parvin B. NUCLEI SEGMENTATION VIA SPARSITY CONSTRAINED CONVOLUTIONAL REGRESSION. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:1284-1287. PMID: 28101301.
      View in: PubMed
    11. Chang H, Wen Q, Parvin B. Coupled Segmentation of Nuclear and Membrane-bound Macromolecules through Voting and Multiphase Level Set. Pattern Recognit. 2015 Mar 01; 48(3):882-893. PMID: 25530633.
      View in: PubMed
    12. Chang H, Parvin B. Classification of 3D Multicellular Organization in Phase Microscopy for High Throughput Screening of Therapeutic Targets. Proc IEEE Workshop Appl Comput Vis. 2015 Jan; 2015:436-441. PMID: 25729338.
      View in: PubMed
    13. Chang H, Zhou Y, Borowsky A, Barner K, Spellman P, Parvin B. Stacked Predictive Sparse Decomposition for Classification of Histology Sections. Int J Comput Vis. 2015 May; 113(1):3-18. PMID: 27721567.
      View in: PubMed
    14. DeFilippis RA, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD. Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density. Cancer Res. 2014 Sep 15; 74(18):5032-5044. PMID: 25172842; PMCID: PMC4335659.
    15. Zhou Y, Chang H, Barner K, Spellman P, Parvin B. Classification of Histology Sections via Multispectral Convolutional Sparse Coding. Conf Comput Vis Pattern Recognit Workshops. 2014 Jun; 2014:3081-3088. PMID: 25554749.
      View in: PubMed
    16. Bilgin CC, Kim S, Leung E, Chang H, Parvin B. Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 2013 Dec 01; 29(23):3087-93. PMID: 24045773; PMCID: PMC3834800.
    17. Chang H, Borowsky A, Spellman P, Parvin B. Classification of Tumor Histology via Morphometric Context. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2013 Jun 23; 2013. PMID: 24319324.
      View in: PubMed
    18. Nayak N, Chang H, Borowsky A, Spellman P, Parvin B. CLASSIFICATION OF TUMOR HISTOPATHOLOGY VIA SPARSE FEATURE LEARNING. Proc IEEE Int Symp Biomed Imaging. 2013 Apr; 2013. PMID: 24319533.
      View in: PubMed
    19. Dumont N, Liu B, Defilippis RA, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD. Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 2013 Mar; 15(3):249-62. PMID: 23479504; PMCID: PMC3593149.
    20. Chang H, Nayak N, Spellman PT, Parvin B. Characterization of tissue histopathology via predictive sparse decomposition and spatial pyramid matching. Med Image Comput Comput Assist Interv. 2013; 16(Pt 2):91-8. PMID: 24579128; PMCID: PMC3998828.
    21. Chang H, Zhou Y, Spellman P, Parvin B. Stacked Predictive Sparse Coding for Classification of Distinct Regions of Tumor Histopathology. Proc IEEE Int Conf Comput Vis. 2013; 169-176. PMID: 24770492.
      View in: PubMed
    22. Chang H, Han J, Borowsky A, Loss L, Gray JW, Spellman PT, Parvin B. Invariant delineation of nuclear architecture in glioblastoma multiforme for clinical and molecular association. IEEE Trans Med Imaging. 2013 Apr; 32(4):670-82. PMID: 23221815; PMCID: PMC3728287.
    23. Loss LA, Bebis G, Chang H, Auer M, Sarkar P, Parvin B. Automatic Segmentation and Quantification of Filamentous Structures in Electron Tomography. ACM BCB. 2012 Oct; 2012:170-177. PMID: 28090597.
      View in: PubMed
    24. Chang H, Han J, Spellman PT, Parvin B. Multireference level set for the characterization of nuclear morphology in glioblastoma multiforme. IEEE Trans Biomed Eng. 2012 Dec; 59(12):3460-7. PMID: 22987497; PMCID: PMC3728286.
    25. DeFilippis RA, Chang H, Dumont N, Rabban JT, Chen YY, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D, Marx JJ, Tjoe JA, Ziv E, Febbraio M, Kerlikowske K, Parvin B, Tlsty TD. CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2012 Sep; 2(9):826-39. PMID: 22777768; PMCID: PMC3457705.
    26. Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang YT, Parvin B. Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. PLoS One. 2012; 7(1):e28802. PMID: 22242152; PMCID: PMC3252290.
    27. Chang H, Fontenay GV, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B. Morphometic analysis of TCGA glioblastoma multiforme. BMC Bioinformatics. 2011 Dec 20; 12:484. PMID: 22185703; PMCID: PMC3271112.
    28. Han J, Chang H, Loss L, Zhang K, Baehner FL, Gray JW, Spellman P, Parvin B. COMPARISON OF SPARSE CODING AND KERNEL METHODS FOR HISTOPATHOLOGICAL CLASSIFICATION OF GLIOBASTOMA MULTIFORME. Proc IEEE Int Symp Biomed Imaging. 2011 Jun 09; 2011:711-714. PMID: 23243485.
      View in: PubMed
    29. Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Helen Barcellos-Hoff M, Parvin B, Rydberg B. Persistence of ?-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to ?-rays or iron ions. Int J Radiat Biol. 2011 Jul; 87(7):696-710. PMID: 21271785.
      View in: PubMed
    30. Rejniak KA, Wang SE, Bryce NS, Chang H, Parvin B, Jourquin J, Estrada L, Gray JW, Arteaga CL, Weaver AM, Quaranta V, Anderson AR. Linking changes in epithelial morphogenesis to cancer mutations using computational modeling. PLoS Comput Biol. 2010 Aug 26; 6(8). PMID: 20865159; PMCID: PMC2928778.
    31. Han J, Chang H, Giricz O, Lee GY, Baehner FL, Gray JW, Bissell MJ, Kenny PA, Parvin B. Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture. PLoS Comput Biol. 2010 Feb 26; 6(2):e1000684. PMID: 20195492; PMCID: PMC2829039.
    32. Han J, Chang H, Andarawewa K, Yaswen P, Barcellos-Hoff MH, Parvin B. Multidimensional profiling of cell surface proteins and nuclear markers. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar; 7(1):80-90. PMID: 20150670.
      View in: PubMed
    33. Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B. MORPHOMETRIC SUBTYPING FOR A PANEL OF BREAST CANCER CELL LINES. Proc IEEE Int Symp Biomed Imaging. 2009 Jun 28; 6:791-794. PMID: 20011457.
      View in: PubMed
    34. Chang H, DeFilippis RA, Tlsty TD, Parvin B. Graphical methods for quantifying macromolecules through bright field imaging. Bioinformatics. 2009 Apr 15; 25(8):1070-5. PMID: 18703588; PMCID: PMC2666809.
    35. Parvin B, Yang Q, Han J, Chang H, Rydberg B, Barcellos-Hoff MH. Iterative voting for inference of structural saliency and characterization of subcellular events. IEEE Trans Image Process. 2007 Mar; 16(3):615-23. PMID: 17357723.
      View in: PubMed
    36. Chang H, Yang Q, Parvin B. Segmentation of heterogeneous blob objects through voting and level set formulation. Pattern Recognit Lett. 2007; 28(13):1781-1787. PMID: 19774202.
      View in: PubMed

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