Hura, Gregory

TitleBiophysicist Research Sci/Engr
InstitutionLawrence Berkeley National Lab
DepartmentMolecular Biophys & Integ Bio
Address1 Cyclotron Road
Berkeley CA 94720
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Chang A, Abderemane-Ali F, Hura G, Rossen ND, Gate RE, Minor DL. A Calmodulin C-Lobe Ca2+-Dependent Switch Governs Kv7 Channel Function. Neuron. 2018 Feb 21; 97(4):836-852.e6. PMID: 29429937.
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    2. Ogorzalek TL, Hura G, Belsom A, Burnett KH, Kryshtafovych A, Tainer JA, Rappsilber J, Tsutakawa SE, Fidelis K. Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy. Proteins. 2018 Jan 04. PMID: 29314274.
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    3. Hura G, Tainer JA. Coiled coils unspring protein origami. Nat Biotechnol. 2017 Nov 09; 35(11):1044-1045. PMID: 29121029.
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    4. Trewhella J, Duff AP, Durand D, Gabel F, Guss JM, Hendrickson WA, Hura G, Jacques DA, Kirby NM, Kwan AH, Pérez J, Pollack L, Ryan TM, Sali A, Schneidman-Duhovny D, Schwede T, Svergun DI, Sugiyama M, Tainer JA, Vachette P, Westbrook J, Whitten AE. 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update. Acta Crystallogr D Struct Biol. 2017 Sep 01; 73(Pt 9):710-728. PMID: 28876235.
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    5. Michael AK, Fribourgh JL, Chelliah Y, Sandate CR, Hura G, Schneidman-Duhovny D, Tripathi SM, Takahashi JS, Partch CL. Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1. Proc Natl Acad Sci U S A. 2017 02 14; 114(7):1560-1565. PMID: 28143926.
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    6. Tang HYH, Tainer JA, Hura G. High Resolution Distance Distributions Determined by X-Ray and Neutron Scattering. Adv Exp Med Biol. 2017; 1009:167-181. PMID: 29218559.
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    7. Lai YT, Hura G, Dyer KN, Tang HY, Tainer JA, Yeates TO. Designing and defining dynamic protein cage nanoassemblies in solution. Sci Adv. 2016 Dec; 2(12):e1501855. PMID: 27990489.
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    8. Brosey CA, Ho C, Long WZ, Singh S, Burnett K, Hura G, Nix JC, Bowman GR, Ellenberger T, Tainer JA. Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor. Structure. 2016 12 06; 24(12):2067-2079. PMID: 27818101.
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    9. Gilmore SF, Blanchette CD, Scharadin TM, Hura G, Rasley A, Corzett M, Pan CX, Fischer NO, Henderson PT. Lipid Cross-Linking of Nanolipoprotein Particles Substantially Enhances Serum Stability and Cellular Uptake. ACS Appl Mater Interfaces. 2016 Aug 17; 8(32):20549-57. PMID: 27411034.
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    10. Bhowmick A, Brookes DH, Yost SR, Dyson HJ, Forman-Kay JD, Gunter D, Head-Gordon M, Hura G, Pande VS, Wemmer DE, Wright PE, Head-Gordon T. Finding Our Way in the Dark Proteome. J Am Chem Soc. 2016 08 10; 138(31):9730-42. PMID: 27387657.
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    11. Hodge CD, Ismail IH, Edwards RA, Hura G, Xiao AT, Tainer JA, Hendzel MJ, Glover JN. RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. J Biol Chem. 2016 Apr 29; 291(18):9396-410. PMID: 26903517; PMCID: PMC4850281 [Available on 04/29/17].
    12. Brunette TJ, Parmeggiani F, Huang PS, Bhabha G, Ekiert DC, Tsutakawa SE, Hura G, Tainer JA, Baker D. Exploring the repeat protein universe through computational protein design. Nature. 2015 Dec 24; 528(7583):580-4. PMID: 26675729.
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    13. He W, Scharadin TM, Saldana M, Gellner C, Hoang-Phou S, Takanishi C, Hura G, Tainer JA, Carraway KL, Henderson PT, Coleman MA. Cell-free expression of functional receptor tyrosine kinases. Sci Rep. 2015 Aug 14; 5:12896. PMID: 26274523; PMCID: PMC4929682.
    14. Kukshal V, Kim IK, Hura G, Tomkinson AE, Tainer JA, Ellenberger T. Human DNA ligase III bridges two DNA ends to promote specific intermolecular DNA end joining. Nucleic Acids Res. 2015 Aug 18; 43(14):7021-31. PMID: 26130724; PMCID: PMC4538836.
    15. Lai YT, Reading E, Hura G, Tsai KL, Laganowsky A, Asturias FJ, Tainer JA, Robinson CV, Yeates TO. Structure of a designed protein cage that self-assembles into a highly porous cube. Nat Chem. 2014 Dec; 6(12):1065-71. PMID: 25411884; PMCID: PMC4239666.
    16. Azubel M, Koivisto J, Malola S, Bushnell D, Hura G, Koh AL, Tsunoyama H, Tsukuda T, Pettersson M, Häkkinen H, Kornberg RD. Nanoparticle imaging. Electron microscopy of gold nanoparticles at atomic resolution. Science. 2014 Aug 22; 345(6199):909-12. PMID: 25146285; PMCID: PMC4315941.
    17. McTernan PM, Chandrayan SK, Wu CH, Vaccaro BJ, Lancaster WA, Yang Q, Fu D, Hura G, Tainer JA, Adams MW. Intact functional fourteen-subunit respiratory membrane-bound [NiFe]-hydrogenase complex of the hyperthermophilic archaeon Pyrococcus furiosus. J Biol Chem. 2014 Jul 11; 289(28):19364-72. PMID: 24860091.
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    18. Dyer KN, Hammel M, Rambo RP, Tsutakawa SE, Rodic I, Classen S, Tainer JA, Hura G. High-throughput SAXS for the characterization of biomolecules in solution: a practical approach. Methods Mol Biol. 2014; 1091:245-58. PMID: 24203338; PMCID: PMC4057279.
    19. Hura G, Tsai CL, Claridge SA, Mendillo ML, Smith JM, Williams GJ, Mastroianni AJ, Alivisatos AP, Putnam CD, Kolodner RD, Tainer JA. DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals. Proc Natl Acad Sci U S A. 2013 Oct 22; 110(43):17308-13. PMID: 24101514; PMCID: PMC3808630.
    20. Bianchetti CM, Brumm P, Smith RW, Dyer K, Hura G, Rutkoski TJ, Phillips GN. Structure, dynamics, and specificity of endoglucanase D from Clostridium cellulovorans. J Mol Biol. 2013 Nov 15; 425(22):4267-85. PMID: 23751954; PMCID: PMC4039632.
    21. Hura G, Budworth H, Dyer KN, Rambo RP, Hammel M, McMurray CT, Tainer JA. Comprehensive macromolecular conformations mapped by quantitative SAXS analyses. Nat Methods. 2013 Jun; 10(6):453-4. PMID: 23624664; PMCID: PMC3728378.
    22. Singh S, Chang A, Helmich KE, Bingman CA, Wrobel RL, Beebe ET, Makino S, Aceti DJ, Dyer K, Hura G, Sunkara M, Morris AJ, Phillips GN, Thorson JS. Structural and functional characterization of CalS11, a TDP-rhamnose 3'-O-methyltransferase involved in calicheamicin biosynthesis. ACS Chem Biol. 2013 Jul 19; 8(7):1632-9. PMID: 23662776; PMCID: PMC3875630.
    23. Bianchetti CM, Harmann CH, Takasuka TE, Hura G, Dyer K, Fox BG. Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E. J Biol Chem. 2013 Jun 21; 288(25):18574-87. PMID: 23653358; PMCID: PMC3689997.
    24. Classen S, Hura G, Holton JM, Rambo RP, Rodic I, McGuire PJ, Dyer K, Hammel M, Meigs G, Frankel KA, Tainer JA. Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source. J Appl Crystallogr. 2013 Feb 01; 46(Pt 1):1-13. PMID: 23396808.
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    25. Zheng Y, Kim SH, Patel AB, Narayanaswami V, Iavarone AT, Hura G, Bielicki JK. The positional specificity of EXXK motifs within an amphipathic a-helix dictates preferential lysine modification by acrolein: implications for the design of high-density lipoprotein mimetic peptides. Biochemistry. 2012 Aug 14; 51(32):6400-12. PMID: 22800301.
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    26. Burke JR, Hura G, Rubin SM. Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control. Genes Dev. 2012 Jun 01; 26(11):1156-66. PMID: 22569856; PMCID: PMC3371405.
    27. Singh RK, Larson JD, Zhu W, Rambo RP, Hura G, Becker DF, Tanner JJ. Small-angle X-ray scattering studies of the oligomeric state and quaternary structure of the trifunctional proline utilization A (PutA) flavoprotein from Escherichia coli. J Biol Chem. 2011 Dec 16; 286(50):43144-53. PMID: 22013066; PMCID: PMC3234867.
    28. Lang WH, Coats JE, Majka J, Hura G, Lin Y, Rasnik I, McMurray CT. Conformational trapping of mismatch recognition complex MSH2/MSH3 on repair-resistant DNA loops. Proc Natl Acad Sci U S A. 2011 Oct 18; 108(42):E837-44. PMID: 21960445; PMCID: PMC3198364.
    29. Zheng Y, Patel AB, Narayanaswami V, Hura G, Hang B, Bielicki JK. HDL mimetic peptide ATI-5261 forms an oligomeric assembly in solution that dissociates to monomers upon dilution. Biochemistry. 2011 May 17; 50(19):4068-76. PMID: 21476522; PMCID: PMC3100537.
    30. Balog ER, Burke JR, Hura G, Rubin SM. Crystal structure of the unliganded retinoblastoma protein pocket domain. Proteins. 2011 Jun; 79(6):2010-4. PMID: 21491492; PMCID: PMC3092862.
    31. Classen S, Rodic I, Holton J, Hura G, Hammel M, Tainer JA. Software for the high-throughput collection of SAXS data using an enhanced Blu-Ice/DCS control system. J Synchrotron Radiat. 2010 Nov; 17(6):774-81. PMID: 20975223; PMCID: PMC2964114.
    32. Clark GN, Hura G, Teixeira J, Soper AK, Head-Gordon T. Small-angle scattering and the structure of ambient liquid water. Proc Natl Acad Sci U S A. 2010 Aug 10; 107(32):14003-7. PMID: 20647388; PMCID: PMC2922569.
    33. Srivastava D, Schuermann JP, White TA, Krishnan N, Sanyal N, Hura G, Tan A, Henzl MT, Becker DF, Tanner JJ. Crystal structure of the bifunctional proline utilization A flavoenzyme from Bradyrhizobium japonicum. Proc Natl Acad Sci U S A. 2010 Feb 16; 107(7):2878-83. PMID: 20133651; PMCID: PMC2840367.
    34. Aleshin AE, Gramatikova S, Hura G, Bobkov A, Strongin AY, Stec B, Tainer JA, Liddington RC, Smith JW. Crystal and solution structures of a prokaryotic M16B peptidase: an open and shut case. Structure. 2009 Nov 11; 17(11):1465-75. PMID: 19913481; PMCID: PMC3615642.
    35. Hammel M, Yu Y, Mahaney BL, Cai B, Ye R, Phipps BM, Rambo RP, Hura G, Pelikan M, So S, Abolfath RM, Chen DJ, Lees-Miller SP, Tainer JA. Ku and DNA-dependent protein kinase dynamic conformations and assembly regulate DNA binding and the initial non-homologous end joining complex. J Biol Chem. 2010 Jan 08; 285(2):1414-23. PMID: 19893054; PMCID: PMC2801267.
    36. Datta AB, Hura G, Wolberger C. The structure and conformation of Lys63-linked tetraubiquitin. J Mol Biol. 2009 Oct 09; 392(5):1117-24. PMID: 19664638; PMCID: PMC2762427.
    37. Hura G, Menon AL, Hammel M, Rambo RP, Poole FL, Tsutakawa SE, Jenney FE, Classen S, Frankel KA, Hopkins RC, Yang SJ, Scott JW, Dillard BD, Adams MW, Tainer JA. Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS). Nat Methods. 2009 Aug; 6(8):606-12. PMID: 19620974; PMCID: PMC3094553.
    38. Pelikan M, Hura G, Hammel M. Structure and flexibility within proteins as identified through small angle X-ray scattering. Gen Physiol Biophys. 2009 Jun; 28(2):174-89. PMID: 19592714; PMCID: PMC3773563.
    39. Yin Q, Lin SC, Lamothe B, Lu M, Lo YC, Hura G, Zheng L, Rich RL, Campos AD, Myszka DG, Lenardo MJ, Darnay BG, Wu H. E2 interaction and dimerization in the crystal structure of TRAF6. Nat Struct Mol Biol. 2009 Jun; 16(6):658-66. PMID: 19465916; PMCID: PMC2834951.
    40. Kozlov G, Määttänen P, Schrag JD, Hura G, Gabrielli L, Cygler M, Thomas DY, Gehring K. Structure of the noncatalytic domains and global fold of the protein disulfide isomerase ERp72. Structure. 2009 May 13; 17(5):651-9. PMID: 19446521.
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    41. Shin DS, Didonato M, Barondeau DP, Hura G, Hitomi C, Berglund JA, Getzoff ED, Cary SC, Tainer JA. Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis. J Mol Biol. 2009 Feb 06; 385(5):1534-55. PMID: 19063897; PMCID: PMC2669833.
    42. Chrencik JE, Brooun A, Zhang H, Mathews II, Hura G, Foster SA, Perry JJ, Streiff M, Ramage P, Widmer H, Bokoch GM, Tainer JA, Weckbecker G, Kuhn P. Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1. J Mol Biol. 2008 Jul 25; 380(5):828-43. PMID: 18589439; PMCID: PMC2620086.
    43. Iyer RR, Pohlhaus TJ, Chen S, Hura G, Dzantiev L, Beese LS, Modrich P. The MutSalpha-proliferating cell nuclear antigen interaction in human DNA mismatch repair. J Biol Chem. 2008 May 09; 283(19):13310-9. PMID: 18326858; PMCID: PMC2423938.
    44. Putnam CD, Hammel M, Hura G, Tainer JA. X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution. Q Rev Biophys. 2007 Aug; 40(3):191-285. PMID: 18078545.
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    45. Russo D, Hura G, Copley JR. Effects of hydration water on protein methyl group dynamics in solution. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr; 75(4 Pt 1):040902. PMID: 17500858.
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    46. Tsutakawa SE, Hura G, Frankel KA, Cooper PK, Tainer JA. Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography. J Struct Biol. 2007 May; 158(2):214-23. PMID: 17182256.
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    47. Pioletti M, Findeisen F, Hura G, Minor DL. Three-dimensional structure of the KChIP1-Kv4.3 T1 complex reveals a cross-shaped octamer. Nat Struct Mol Biol. 2006 Nov; 13(11):987-95. PMID: 17057713; PMCID: PMC3018330.
    48. Pascal JM, Tsodikov OV, Hura G, Song W, Cotner EA, Classen S, Tomkinson AE, Tainer JA, Ellenberger T. A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA. Mol Cell. 2006 Oct 20; 24(2):279-91. PMID: 17052461.
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    49. Corn JE, Pease PJ, Hura G, Berger JM. Crosstalk between primase subunits can act to regulate primer synthesis in trans. Mol Cell. 2005 Nov 11; 20(3):391-401. PMID: 16285921.
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    50. Horn HW, Swope WC, Pitera JW, Madura JD, Dick TJ, Hura G, Head-Gordon T. Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew. J Chem Phys. 2004 May 22; 120(20):9665-78. PMID: 15267980.
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    51. Russo D, Hura G, Head-Gordon T. Hydration dynamics near a model protein surface. Biophys J. 2004 Mar; 86(3):1852-62. PMID: 14990511; PMCID: PMC1304019.
    52. Head-Gordon T, Hura G. Water structure from scattering experiments and simulation. Chem Rev. 2002 Aug; 102(8):2651-70. PMID: 12175263.
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