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Schulz, Frederik

TitleComputational Bio PD Fellow
InstitutionLawrence Berkeley National Lab
DepartmentJoint Genome Institute
Address1 Cyclotron Road
Berkeley CA 94720
Phone925/296-5609
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hesse C, Schulz F, Bull CT, Shaffer BT, Yan Q, Shapiro N, Hassan KA, Varghese N, Elbourne LDH, Paulsen IT, Kyrpides N, Woyke T, Loper JE. Genome-based evolutionary history of Pseudomonas spp. Environ Microbiol. 2018 Apr 06. PMID: 29633519.
      View in: PubMed
    2. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 Feb 06; 36(2):196. PMID: 29406516.
      View in: PubMed
    3. Michalik A, Schulz F, Michalik K, Wascher F, Horn M, Szklarzewicz T. Coexistence of novel gammaproteobacterial and Arsenophonus symbionts in the scale insect Greenisca brachypodii (Hemiptera, Coccomorpha: Eriococcidae). Environ Microbiol. 2018 Feb 02. PMID: 29393559.
      View in: PubMed
    4. Woyke T, Doud DFR, Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods. 2017 Oct 31; 14(11):1045-1054. PMID: 29088131.
      View in: PubMed
    5. Schulz F, Eloe-Fadrosh EA, Bowers RM, Jarett J, Nielsen T, Ivanova NN, Kyrpides NC, Woyke T. Towards a balanced view of the bacterial tree of life. Microbiome. 2017 Oct 17; 5(1):140. PMID: 29041958.
      View in: PubMed
    6. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017 Aug 08; 35(8):725-731. PMID: 28787424.
      View in: PubMed
    7. Yu FB, Blainey PC, Schulz F, Woyke T, Horowitz MA, Quake SR. Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples. Elife. 2017 07 05; 6. PMID: 28678007.
      View in: PubMed
    8. Schulz F, Yutin N, Ivanova NN, Ortega DR, Lee TK, Vierheilig J, Daims H, Horn M, Wagner M, Jensen GJ, Kyrpides NC, Koonin EV, Woyke T. Giant viruses with an expanded complement of translation system components. Science. 2017 04 07; 356(6333):82-85. PMID: 28386012.
      View in: PubMed
    9. Zojer M, Schuster LN, Schulz F, Pfundner A, Horn M, Rattei T. Variant profiling of evolving prokaryotic populations. PeerJ. 2017; 5:e2997. PMID: 28224054.
      View in: PubMed
    10. Szabó G, Schulz F, Toenshoff ER, Volland JM, Finkel OM, Belkin S, Horn M. Convergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts. ISME J. 2017 03; 11(3):715-726. PMID: 27983719.
      View in: PubMed
    11. Pizzetti I, Schulz F, Tyml T, Fuchs BM, Amann R, Horn M, Fazi S. Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake. Environ Microbiol. 2016 09; 18(8):2405-17. PMID: 26530333.
      View in: PubMed
    12. Feldbauer R, Schulz F, Horn M, Rattei T. Prediction of microbial phenotypes based on comparative genomics. BMC Bioinformatics. 2015; 16 Suppl 14:S1. PMID: 26451672; PMCID: PMC4603748.
    13. Schulz F, Tyml T, Pizzetti I, Dyková I, Fazi S, Kostka M, Horn M. Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. Sci Rep. 2015 Aug 25; 5:13381. PMID: 26303516; PMCID: PMC4642509.
    14. Collingro A, Kostanjšek R, Toenshoff ER, Schulz F, Schuster L, Domann D, Horn M. Draft Genome Sequence of "Candidatus Hepatoplasma crinochetorum" Ps, a Bacterial Symbiont in the Hepatopancreas of the Terrestrial Isopod Porcellio scaber. Genome Announc. 2015 Aug 13; 3(4). PMID: 26272556; PMCID: PMC4536667.
    15. Na H, Lever MA, Kjeldsen KU, Schulz F, Jørgensen BB. Uncultured Desulfobacteraceae and Crenarchaeotal group C3 incorporate 13C-acetate in coastal marine sediment. Environ Microbiol Rep. 2015 Aug; 7(4):614-22. PMID: 25950866.
      View in: PubMed
    16. Schulz F, Martijn J, Wascher F, Lagkouvardos I, Kostanjšek R, Ettema TJ, Horn M. A Rickettsiales symbiont of amoebae with ancient features. Environ Microbiol. 2016 09; 18(8):2326-42. PMID: 25908022.
      View in: PubMed
    17. Martijn J, Schulz F, Zaremba-Niedzwiedzka K, Viklund J, Stepanauskas R, Andersson SG, Horn M, Guy L, Ettema TJ. Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. ISME J. 2015 Nov; 9(11):2373-85. PMID: 25848874; PMCID: PMC4497978.
    18. Schulz F, Horn M. Intranuclear bacteria: inside the cellular control center of eukaryotes. Trends Cell Biol. 2015 Jun; 25(6):339-46. PMID: 25680230.
      View in: PubMed
    19. Schulz F, Lagkouvardos I, Wascher F, Aistleitner K, Kostanjšek R, Horn M. Life in an unusual intracellular niche: a bacterial symbiont infecting the nucleus of amoebae. ISME J. 2014 Aug; 8(8):1634-44. PMID: 24500618; PMCID: PMC4817620.
    20. Aistleitner K, Heinz C, Hörmann A, Heinz E, Montanaro J, Schulz F, Maier E, Pichler P, Benz R, Horn M. Identification and characterization of a novel porin family highlights a major difference in the outer membrane of chlamydial symbionts and pathogens. PLoS One. 2013; 8(1):e55010. PMID: 23383036; PMCID: PMC3561449.
    21. Zhang A, London R, Schulz F, Giguère-Simmonds PW, Delriviere L, Chandraratana H, Hardy K, Zheng S, Olynyk JK, Yeoh G. Human liver progenitor cell lines are readily established from non-tumorous tissue adjacent to hepatocellular carcinoma. Stem Cells Dev. 2010 Aug; 19(8):1277-84. PMID: 19874130.
      View in: PubMed
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