Brodie, Eoin

TitleGeological Senior Scientist
InstitutionLawrence Berkeley National Lab
DepartmentClimate & Ecosystems
Address1 Cyclotron Road
Berkeley CA 94720
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
    List All   |   Timeline
    1. Wood LF, Brown BP, Lennard K, Karaoz U, Havyarimana E, Passmore JS, Hesseling AC, Edlefsen PT, Kuhn L, Mulder N, Brodie E, Sodora DL, Jaspan HB. Feeding-related gut microbial composition associates with peripheral T cell activation and mucosal gene expression in African infants. Clin Infect Dis. 2018 Apr 05. PMID: 29659737.
      View in: PubMed
    2. Karaoz U, Couradeau E, da Rocha UN, Lim HC, Northen T, Garcia-Pichel F, Brodie E. Large Blooms of Bacillales (Firmicutes) Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity. MBio. 2018 Mar 06; 9(2). PMID: 29511079.
      View in: PubMed
    3. D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie E, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J. Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate. Stand Genomic Sci. 2017; 12:67. PMID: 29167704.
      View in: PubMed
    4. Chase AB, Karaoz U, Brodie E, Gomez-Lunar Z, Martiny AC, Martiny JBH. Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. MBio. 2017 Nov 14; 8(6). PMID: 29138307.
      View in: PubMed
    5. Obadia B, Güvener ZT, Zhang V, Ceja-Navarro JA, Brodie E, Ja WW, Ludington WB. Probabilistic Invasion Underlies Natural Gut Microbiome Stability. Curr Biol. 2017 Jul 10; 27(13):1999-2006.e8. PMID: 28625783.
      View in: PubMed
    6. Varadharajan C, Beller HR, Bill M, Brodie E, Conrad ME, Han R, Irwin C, Larsen JT, Lim HC, Molins S, Steefel CI, van Hise A, Yang L, Nico PS. Reoxidation of Chromium(III) Products Formed under Different Biogeochemical Regimes. Environ Sci Technol. 2017 May 02; 51(9):4918-4927. PMID: 28365989.
      View in: PubMed
    7. Yabusaki SB, Wilkins MJ, Fang Y, Williams KH, Arora B, Bargar J, Beller HR, Bouskill NJ, Brodie E, Christensen JN, Conrad ME, Danczak RE, King E, Soltanian MR, Spycher NF, Steefel CI, Tokunaga TK, Versteeg R, Waichler SR, Wainwright HM. Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain. Environ Sci Technol. 2017 Mar 21; 51(6):3307-3317. PMID: 28218533.
      View in: PubMed
    8. Jewell TN, Karaoz U, Bill M, Chakraborty R, Brodie E, Williams KH, Beller HR. Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer. Front Microbiol. 2017; 8:40. PMID: 28179898.
      View in: PubMed
    9. Ben Guerrero E, Soria M, Salvador R, Ceja-Navarro JA, Campos E, Brodie E, Talia P. Effect of Different Lignocellulosic Diets on Bacterial Microbiota and Hydrolytic Enzyme Activities in the Gut of the Cotton Boll Weevil (Anthonomus grandis). Front Microbiol. 2016; 7:2093. PMID: 28082962.
      View in: PubMed
    10. Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie E, Williams KH, Hubbard SS, Banfield JF. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat Commun. 2016 Oct 24; 7:13219. PMID: 27774985.
      View in: PubMed
    11. Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie E, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. ISME J. 2017 02; 11(2):490-499. PMID: 27740610.
      View in: PubMed
    12. Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie E, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 2016 May; 97(5):1307-18. PMID: 27349106.
      View in: PubMed
    13. Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie E. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Front Microbiol. 2016; 7:525. PMID: 27148214; PMCID: PMC4837414.
    14. Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie E. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Front Microbiol. 2016; 7:323. PMID: 27014243; PMCID: PMC4791749.
    15. Jewell TN, Karaoz U, Brodie E, Williams KH, Beller HR. Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer. ISME J. 2016 09; 10(9):2106-17. PMID: 26943628; PMCID: PMC4989316.
    16. Couradeau E, Karaoz U, Lim HC, Nunes da Rocha U, Northen T, Brodie E, Garcia-Pichel F. Bacteria increase arid-land soil surface temperature through the production of sunscreens. Nat Commun. 2016 Jan 20; 7:10373. PMID: 26785770; PMCID: PMC4735820.
    17. Baran R, Brodie E, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015 Sep 22; 6:8289. PMID: 26392107; PMCID: PMC4595634.
    18. Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie E, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. MBio. 2015 Aug 04; 6(4):e00746. PMID: 26242625; PMCID: PMC4526712.
    19. Vega FE, Brown SM, Chen H, Shen E, Nair MB, Ceja-Navarro JA, Brodie E, Infante F, Dowd PF, Pain A. Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei. Sci Rep. 2015 Jul 31; 5:12525. PMID: 26228545; PMCID: PMC4521149.
    20. Ceja-Navarro JA, Vega FE, Karaoz U, Hao Z, Jenkins S, Lim HC, Kosina P, Infante F, Northen TR, Brodie E. Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee. Nat Commun. 2015 Jul 14; 6:7618. PMID: 26173063; PMCID: PMC4510693.
    21. Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie E. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Front Microbiol. 2015; 6:277. PMID: 25926821; PMCID: PMC4396413.
    22. Srinivasan R, Karaoz U, Volegova M, MacKichan J, Kato-Maeda M, Miller S, Nadarajan R, Brodie E, Lynch SV. Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens. PLoS One. 2015; 10(2):e0117617. PMID: 25658760; PMCID: PMC4319838.
    23. Berlemont R, Allison SD, Weihe C, Lu Y, Brodie E, Martiny JB, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639. PMID: 25505459; PMCID: PMC4243572.
    24. Beller HR, Yang L, Varadharajan C, Han R, Lim HC, Karaoz U, Molins S, Marcus MA, Brodie E, Steefel CI, Nico PS. Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products. Environ Sci Technol. 2014 Sep 16; 48(18):10699-706. PMID: 25084058.
      View in: PubMed
    25. Closek CJ, Sunagawa S, DeSalvo MK, Piceno YM, DeSantis TZ, Brodie E, Weber MX, Voolstra CR, Andersen GL, Medina M. Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. ISME J. 2014 Dec; 8(12):2411-22. PMID: 24950107; PMCID: PMC4260706.
    26. Ganz HH, Turner WC, Brodie E, Kusters M, Shi Y, Sibanda H, Torok T, Getz WM. Interactions between Bacillus anthracis and plants may promote anthrax transmission. PLoS Negl Trop Dis. 2014 Jun; 8(6):e2903. PMID: 24901846; PMCID: PMC4046938.
    27. Wells GF, Wu CH, Piceno YM, Eggleston B, Brodie E, Desantis TZ, Andersen GL, Hazen TC, Francis CA, Criddle CS. Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes. Appl Microbiol Biotechnol. 2014 May; 98(10):4723-36. PMID: 24553968.
      View in: PubMed
    28. Ma Y, Madupu R, Karaoz U, Nossa CW, Yang L, Yooseph S, Yachimski PS, Brodie E, Nelson KE, Pei Z. Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets. J Virol. 2014 May; 88(9):4786-97. PMID: 24522917; PMCID: PMC3993818.
    29. Briggs BR, Brodie E, Tom LM, Dong H, Jiang H, Huang Q, Wang S, Hou W, Wu G, Huang L, Hedlund BP, Zhang C, Dijkstra P, Hungate BA. Seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Province, China. Environ Microbiol. 2014 Jun; 16(6):1579-91. PMID: 24148100.
      View in: PubMed
    30. Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie E. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282. PMID: 24069019; PMCID: PMC3779933.
    31. Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie E. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. ISME J. 2014 Jan; 8(1):6-18. PMID: 23985746; PMCID: PMC3869013.
    32. Close HG, Shah SR, Ingalls AE, Diefendorf AF, Brodie E, Hansman RL, Freeman KH, Aluwihare LI, Pearson A. Export of submicron particulate organic matter to mesopelagic depth in an oligotrophic gyre. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12565-70. PMID: 23858459; PMCID: PMC3732979.
    33. Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie E, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J. 2013 Nov; 7(11):2178-91. PMID: 23739051; PMCID: PMC3806265.
    34. Lau SC, Zhang R, Brodie E, Piceno YM, Andersen G, Liu WT. Biogeography of bacterioplankton in the tropical seawaters of Singapore. FEMS Microbiol Ecol. 2013 May; 84(2):259-69. PMID: 23237658.
      View in: PubMed
    35. Bouskill NJ, Lim HC, Borglin S, Salve R, Wood TE, Silver WL, Brodie E. Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought. ISME J. 2013 Feb; 7(2):384-94. PMID: 23151641; PMCID: PMC3554394.
    36. Bouskill NJ, Tang J, Riley WJ, Brodie E. Trait-based representation of biological nitrification: model development, testing, and predicted community composition. Front Microbiol. 2012; 3:364. PMID: 23087681; PMCID: PMC3475126.
    37. Lynch SV, Goldfarb KC, Wild YK, Kong W, De Lisle RC, Brodie E. Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota. Gut Microbes. 2013 Jan-Feb; 4(1):41-7. PMID: 23060053; PMCID: PMC3555885.
    38. Beller HR, Han R, Karaoz U, Lim H, Brodie E. Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1. Appl Environ Microbiol. 2013 Jan; 79(1):63-73. PMID: 23064329; PMCID: PMC3536105.
    39. Hayden HL, Mele PM, Bougoure DS, Allan CY, Norng S, Piceno YM, Brodie E, Desantis TZ, Andersen GL, Williams AL, Hovenden MJ. Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil. Environ Microbiol. 2012 Dec; 14(12):3081-96. PMID: 23039205.
      View in: PubMed
    40. Placella SA, Brodie E, Firestone MK. Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proc Natl Acad Sci U S A. 2012 Jul 03; 109(27):10931-6. PMID: 22715291; PMCID: PMC3390866.
    41. Reith F, Brugger J, Zammit CM, Gregg AL, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie E, Lu Z, He Z, Zhou J, Wakelin SA. Influence of geogenic factors on microbial communities in metallogenic Australian soils. ISME J. 2012 Nov; 6(11):2107-18. PMID: 22673626; PMCID: PMC3475370.
    42. Brisson VL, West KA, Lee PK, Tringe SG, Brodie E, Alvarez-Cohen L. Metagenomic analysis of a stable trichloroethene-degrading microbial community. ISME J. 2012 Sep; 6(9):1702-14. PMID: 22378537; PMCID: PMC3498913.
    43. Godoy-Vitorino F, Leal SJ, Díaz WA, Rosales J, Goldfarb KC, García-Amado MA, Michelangeli F, Brodie E, Domínguez-Bello MG. Differences in crop bacterial community structure between hoatzins from different geographical locations. Res Microbiol. 2012 Apr; 163(3):211-20. PMID: 22313738.
      View in: PubMed
    44. Lee PK, Warnecke F, Brodie E, Macbeth TW, Conrad ME, Andersen GL, Alvarez-Cohen L. Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site. Environ Sci Technol. 2012 Jan 17; 46(2):1044-54. PMID: 22091783; PMCID: PMC3461955.
    45. Sridevi G, Minocha R, Turlapati SA, Goldfarb KC, Brodie E, Tisa LS, Minocha SC. Soil bacterial communities of a calcium-supplemented and a reference watershed at the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA. FEMS Microbiol Ecol. 2012 Mar; 79(3):728-40. PMID: 22098093.
      View in: PubMed
    46. Mayali X, Weber PK, Brodie E, Mabery S, Hoeprich PD, Pett-Ridge J. High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. ISME J. 2012 Jun; 6(6):1210-21. PMID: 22158395; PMCID: PMC3358021.
    47. Wakelin SA, Anand RR, Reith F, Gregg AL, Noble RR, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie E. Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia. FEMS Microbiol Ecol. 2012 Feb; 79(2):298-311. PMID: 22092956.
      View in: PubMed
    48. Godoy-Vitorino F, Goldfarb KC, Karaoz U, Leal S, Garcia-Amado MA, Hugenholtz P, Tringe SG, Brodie E, Dominguez-Bello MG. Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J. 2012 Mar; 6(3):531-41. PMID: 21938024; PMCID: PMC3280141.
    49. Brodie E, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC. Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater. Chemosphere. 2011 Oct; 85(4):660-5. PMID: 21872904.
      View in: PubMed
    50. DeAngelis KM, Wu CH, Beller HR, Brodie E, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol. 2011 Sep; 77(18):6313-22. PMID: 21764955; PMCID: PMC3187179.
    51. Banning NC, Gleeson DB, Grigg AH, Grant CD, Andersen GL, Brodie E, Murphy DV. Soil microbial community successional patterns during forest ecosystem restoration. Appl Environ Microbiol. 2011 Sep; 77(17):6158-64. PMID: 21724890; PMCID: PMC3165429.
    52. Kelly LC, Cockell CS, Herrera-Belaroussi A, Piceno Y, Andersen G, DeSantis T, Brodie E, Thorsteinsson T, Marteinsson V, Poly F, LeRoux X. Bacterial diversity of terrestrial crystalline volcanic rocks, Iceland. Microb Ecol. 2011 Jul; 62(1):69-79. PMID: 21584756.
      View in: PubMed
    53. Mohanty SR, Kollah B, Brodie E, Hazen TC, Roden EE. 16S rRNA gene microarray analysis of microbial communities in ethanol-stimulated subsurface sediment. Microbes Environ. 2011; 26(3):261-5. PMID: 21558677.
      View in: PubMed
    54. Goldfarb KC, Karaoz U, Hanson CA, Santee CA, Bradford MA, Treseder KK, Wallenstein MD, Brodie E. Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front Microbiol. 2011; 2:94. PMID: 21833332; PMCID: PMC3153052.
    55. DeSantis TZ, Keller K, Karaoz U, Alekseyenko AV, Singh NN, Brodie E, Pei Z, Andersen GL, Larsen N. Simrank: Rapid and sensitive general-purpose k-mer search tool. BMC Ecol. 2011 Apr 27; 11:11. PMID: 21524302; PMCID: PMC3097142.
    56. Paszczynski AJ, Paidisetti R, Johnson AK, Crawford RL, Colwell FS, Green T, Delwiche M, Lee H, Newby D, Brodie E, Conrad M. Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase. Biodegradation. 2011 Nov; 22(6):1045-59. PMID: 21360114.
      View in: PubMed
    57. Lee PK, Cheng D, Hu P, West KA, Dick GJ, Brodie E, Andersen GL, Zinder SH, He J, Alvarez-Cohen L. Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. ISME J. 2011 Jun; 5(6):1014-24. PMID: 21228894; PMCID: PMC3131851.
    58. Huang YJ, Nelson CE, Brodie E, Desantis TZ, Baek MS, Liu J, Woyke T, Allgaier M, Bristow J, Wiener-Kronish JP, Sutherland ER, King TS, Icitovic N, Martin RJ, Calhoun WJ, Castro M, Denlinger LC, Dimango E, Kraft M, Peters SP, Wasserman SI, Wechsler ME, Boushey HA, Lynch SV. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol. 2011 Feb; 127(2):372-381.e1-3. PMID: 21194740; PMCID: PMC3037020.
    59. Chourey K, Jansson J, VerBerkmoes N, Shah M, Chavarria KL, Tom LM, Brodie E, Hettich RL. Direct cellular lysis/protein extraction protocol for soil metaproteomics. J Proteome Res. 2010 Dec 03; 9(12):6615-22. PMID: 20954746.
      View in: PubMed
    60. Baran R, Bowen BP, Bouskill NJ, Brodie E, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Anal Chem. 2010 Nov 01; 82(21):9034-42. PMID: 20945921.
      View in: PubMed
    61. Maldonado-Contreras A, Goldfarb KC, Godoy-Vitorino F, Karaoz U, Contreras M, Blaser MJ, Brodie E, Dominguez-Bello MG. Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J. 2011 Apr; 5(4):574-9. PMID: 20927139; PMCID: PMC3105737.
    62. Han R, Geller JT, Yang L, Brodie E, Chakraborty R, Larsen JT, Beller HR. Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad. Environ Sci Technol. 2010 Oct 01; 44(19):7491-7. PMID: 20822129.
      View in: PubMed
    63. Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, Brodie E, Malamud D, Poles MA, Pei Z. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol. 2010 Sep 07; 16(33):4135-44. PMID: 20806429; PMCID: PMC2932916.
    64. Fujimura KE, Johnson CC, Ownby DR, Cox MJ, Brodie E, Havstad SL, Zoratti EM, Woodcroft KJ, Bobbitt KR, Wegienka G, Boushey HA, Lynch SV. Man's best friend? The effect of pet ownership on house dust microbial communities. J Allergy Clin Immunol. 2010 Aug; 126(2):410-2, 412.e1-3. PMID: 20633927; PMCID: PMC2956425.
    65. Cox MJ, Allgaier M, Taylor B, Baek MS, Huang YJ, Daly RA, Karaoz U, Andersen GL, Brown R, Fujimura KE, Wu B, Tran D, Koff J, Kleinhenz ME, Nielson D, Brodie E, Lynch SV. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One. 2010 Jun 23; 5(6):e11044. PMID: 20585638; PMCID: PMC2890402.
    66. Wu CH, Sercu B, Van de Werfhorst LC, Wong J, DeSantis TZ, Brodie E, Hazen TC, Holden PA, Andersen GL. Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. PLoS One. 2010 Jun 23; 5(6):e11285. PMID: 20585654; PMCID: PMC2890573.
    67. Lemon KP, Klepac-Ceraj V, Schiffer HK, Brodie E, Lynch SV, Kolter R. Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio. 2010 Jun 22; 1(3). PMID: 20802827; PMCID: PMC2925076.
    68. Conrad ME, Brodie E, Radtke CW, Bill M, Delwiche ME, Lee MH, Swift DL, Colwell FS. Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater. Environ Sci Technol. 2010 Jun 15; 44(12):4697-704. PMID: 20476753.
      View in: PubMed
    69. Pei AY, Oberdorf WE, Nossa CW, Agarwal A, Chokshi P, Gerz EA, Jin Z, Lee P, Yang L, Poles M, Brown SM, Sotero S, Desantis T, Brodie E, Nelson K, Pei Z. Diversity of 16S rRNA genes within individual prokaryotic genomes. Appl Environ Microbiol. 2010 Jun; 76(12):3886-97. PMID: 20418441; PMCID: PMC2893482.
    70. Klepac-Ceraj V, Lemon KP, Martin TR, Allgaier M, Kembel SW, Knapp AA, Lory S, Brodie E, Lynch SV, Bohannan BJ, Green JL, Maurer BA, Kolter R. Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol. 2010 May; 12(5):1293-303. PMID: 20192960.
      View in: PubMed
    71. Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie E, Desantis TZ, Andersen GL, van Veen JA, Kowalchuk GA. Microbial secondary succession in a chronosequence of chalk grasslands. ISME J. 2010 May; 4(5):711-5. PMID: 20164861.
      View in: PubMed
    72. Godoy-Vitorino F, Goldfarb KC, Brodie E, Garcia-Amado MA, Michelangeli F, Domínguez-Bello MG. Developmental microbial ecology of the crop of the folivorous hoatzin. ISME J. 2010 May; 4(5):611-20. PMID: 20130656.
      View in: PubMed
    73. Huang YJ, Kim E, Cox MJ, Brodie E, Brown R, Wiener-Kronish JP, Lynch SV. A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS. 2010 Feb; 14(1):9-59. PMID: 20141328; PMCID: PMC3116451.
    74. Cox MJ, Huang YJ, Fujimura KE, Liu JT, McKean M, Boushey HA, Segal MR, Brodie E, Cabana MD, Lynch SV. Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One. 2010 Jan 18; 5(1):e8745. PMID: 20090909; PMCID: PMC2807455.
    75. Fan C, Lee PK, Ng WJ, Alvarez-Cohen L, Brodie E, Andersen GL, He J. Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs). Appl Microbiol Biotechnol. 2009 Nov; 85(1):185-95. PMID: 19727707; PMCID: PMC2765652.
    76. Ivanov II, Atarashi K, Manel N, Brodie E, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell. 2009 Oct 30; 139(3):485-98. PMID: 19836068; PMCID: PMC2796826.
    77. Cruz-Martínez K, Suttle KB, Brodie E, Power ME, Andersen GL, Banfield JF. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J. 2009 Jun; 3(6):738-44. PMID: 19279669.
      View in: PubMed
    78. Shawkey MD, Firestone MK, Brodie E, Beissinger SR. Avian incubation inhibits growth and diversification of bacterial assemblages on eggs. PLoS One. 2009; 4(2):e4522. PMID: 19225566; PMCID: PMC2639702.
    79. Sunagawa S, DeSantis TZ, Piceno YM, Brodie E, DeSalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J. 2009 May; 3(5):512-21. PMID: 19129866.
      View in: PubMed
    80. Tokunaga TK, Wan J, Kim Y, Daly RA, Brodie E, Hazen TC, Herman D, Firestone MK. Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment. Environ Sci Technol. 2008 Dec 01; 42(23):8901-7. PMID: 19192816.
      View in: PubMed
    81. Yergeau E, Schoondermark-Stolk SA, Brodie E, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA. Environmental microarray analyses of Antarctic soil microbial communities. ISME J. 2009 Mar; 3(3):340-51. PMID: 19020556.
      View in: PubMed
    82. Faybishenko B, Hazen TC, Long PE, Brodie E, Conrad ME, Hubbard SS, Christensen JN, Joyner D, Borglin SE, Chakraborty R, Williams KH, Peterson JE, Chen J, Brown ST, Tokunaga TK, Wan J, Firestone M, Newcomer DR, Resch CT, Cantrell KJ, Willett A, Koenigsberg S. In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol. 2008 Nov 15; 42(22):8478-85. PMID: 19068835.
      View in: PubMed
    83. DeAngelis KM, Brodie E, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. ISME J. 2009 Feb; 3(2):168-78. PMID: 19005498.
      View in: PubMed
    84. Wan J, Tokunaga TK, Kim Y, Brodie E, Daly R, Hazen TC, Firestone MK. Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment. Environ Sci Technol. 2008 Oct 15; 42(20):7573-9. PMID: 18983077.
      View in: PubMed
    85. Chivian D, Brodie E, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, Gihring TM, Lapidus A, Lin LH, Lowry SR, Moser DP, Richardson PM, Southam G, Wanger G, Pratt LM, Andersen GL, Hazen TC, Brockman FJ, Arkin AP, Onstott TC. Environmental genomics reveals a single-species ecosystem deep within Earth. Science. 2008 Oct 10; 322(5899):275-8. PMID: 18845759.
      View in: PubMed
    86. Wrighton KC, Agbo P, Warnecke F, Weber KA, Brodie E, DeSantis TZ, Hugenholtz P, Andersen GL, Coates JD. A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J. 2008 Nov; 2(11):1146-56. PMID: 18769460.
      View in: PubMed
    87. West KA, Johnson DR, Hu P, DeSantis TZ, Brodie E, Lee PK, Feil H, Andersen GL, Zinder SH, Alvarez-Cohen L. Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Appl Environ Microbiol. 2008 Jun; 74(11):3533-40. PMID: 18359838; PMCID: PMC2423027.
    88. Johnson DR, Brodie E, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L. Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol. 2008 May; 74(9):2864-72. PMID: 18310438; PMCID: PMC2394897.
    89. Moissl C, Osman S, La Duc MT, Dekas A, Brodie E, DeSantis T, Desantis T, Venkateswaran K. Molecular bacterial community analysis of clean rooms where spacecraft are assembled. FEMS Microbiol Ecol. 2007 Sep; 61(3):509-21. PMID: 17655710.
      View in: PubMed
    90. DeSantis TZ, Brodie E, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol. 2007 Apr; 53(3):371-83. PMID: 17334858.
      View in: PubMed
    91. Brodie E, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL. Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci U S A. 2007 Jan 02; 104(1):299-304. PMID: 17182744; PMCID: PMC1713168.
    92. Lin LH, Wang PL, Rumble D, Lippmann-Pipke J, Boice E, Pratt LM, Sherwood Lollar B, Brodie E, Hazen TC, Andersen GL, DeSantis TZ, Moser DP, Kershaw D, Onstott TC. Long-term sustainability of a high-energy, low-diversity crustal biome. Science. 2006 Oct 20; 314(5798):479-82. PMID: 17053150.
      View in: PubMed
    93. Brodie E, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol. 2006 Sep; 72(9):6288-98. PMID: 16957256; PMCID: PMC1563607.
    94. Kennedy N, Brodie E, Connolly J, Clipson N. Seasonal influences on fungal community structure in unimproved and improved upland grassland soils. Can J Microbiol. 2006 Jul; 52(7):689-94. PMID: 16917526.
      View in: PubMed
    95. Abulencia CB, Wyborski DL, Garcia JA, Podar M, Chen W, Chang SH, Chang HW, Watson D, Brodie E, Hazen TC, Keller M. Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol. 2006 May; 72(5):3291-301. PMID: 16672469; PMCID: PMC1472342.
    96. Hu P, Brodie E, Suzuki Y, McAdams HH, Andersen GL. Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus. J Bacteriol. 2005 Dec; 187(24):8437-49. PMID: 16321948; PMCID: PMC1317002.
    97. Tokunaga TK, Wan J, Pena J, Brodie E, Firestone MK, Hazen TC, Sutton SR, Lanzirotti A, Newville M. Uranium reduction in sediments under diffusion-limited transport of organic carbon. Environ Sci Technol. 2005 Sep 15; 39(18):7077-83. PMID: 16201631.
      View in: PubMed
    98. Wan J, Tokunaga TK, Brodie E, Wang Z, Zheng Z, Herman D, Hazen TC, Firestone MK, Sutton SR. Reoxidation of bioreduced uranium under reducing conditions. Environ Sci Technol. 2005 Aug 15; 39(16):6162-9. PMID: 16173577.
      View in: PubMed
    99. Kennedy N, Brodie E, Connolly J, Clipson N. Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms. Environ Microbiol. 2004 Oct; 6(10):1070-80. PMID: 15344932.
      View in: PubMed
    100. Brodie E, Edwards S, Clipson N. Soil fungal community structure in a temperate upland grassland soil. FEMS Microbiol Ecol. 2003 Jul 01; 45(2):105-14. PMID: 19719621.
      View in: PubMed
    Eoin's Networks
    Derived automatically from this person's publications.
    People in Profiles who have published with this person.
    Related Authors
    People who share related concepts with this person.

    This site is running Profiles RNS version v2.10.1-547-g65964d44 on PROFILES-PWEB02.