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Eloe-Fadrosh, Emiley

TitleCmpl Biologist Research SE
InstitutionLawrence Berkeley National Lab
DepartmentJoint Genome Institute
Address1 Cyclotron Road
Berkeley CA 94720
Phone925/296-5704
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh E, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D, Perry R, Henderson G, Creevey CJ, Terrapon N, Lapebie P, Drula E, Lombard V, Rubin E, Kyrpides NC, Henrissat B, Woyke T, Ivanova NN, Kelly WJ. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nat Biotechnol. 2018 Apr; 36(4):359-367. PMID: 29553575.
      View in: PubMed
    2. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh E, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 Feb 06; 36(2):196. PMID: 29406516.
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    3. Chen LX, Méndez-García C, Dombrowski N, Servín-Garcidueñas LE, Eloe-Fadrosh E, Fang BZ, Luo ZH, Tan S, Zhi XY, Hua ZS, Martinez-Romero E, Woyke T, Huang LN, Sánchez J, Peláez AI, Ferrer M, Baker BJ, Shu WS. Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. ISME J. 2018 Mar; 12(3):756-775. PMID: 29222443.
      View in: PubMed
    4. Schulz F, Eloe-Fadrosh E, Bowers RM, Jarett J, Nielsen T, Ivanova NN, Kyrpides NC, Woyke T. Correction to: Towards a balanced view of the bacterial tree of life. Microbiome. 2017 11 15; 5(1):149. PMID: 29141685.
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    5. Schulz F, Eloe-Fadrosh E, Bowers RM, Jarett J, Nielsen T, Ivanova NN, Kyrpides NC, Woyke T. Towards a balanced view of the bacterial tree of life. Microbiome. 2017 Oct 17; 5(1):140. PMID: 29041958.
      View in: PubMed
    6. Roux S, Emerson JB, Eloe-Fadrosh E, Sullivan MB. Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity. PeerJ. 2017; 5:e3817. PMID: 28948103.
      View in: PubMed
    7. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh E, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017 Aug 08; 35(8):725-731. PMID: 28787424.
      View in: PubMed
    8. Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh E, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nat Biotechnol. 2017 Jul; 35(7):676-683. PMID: 28604660.
      View in: PubMed
    9. Paez-Espino D, Eloe-Fadrosh E, Pavlopoulos GA, Thomas AD, Huntemann M, Mikhailova N, Rubin E, Ivanova NN, Kyrpides NC. Uncovering Earth's virome. Nature. 2016 08 25; 536(7617):425-30. PMID: 27533034.
      View in: PubMed
    10. Kyrpides NC, Eloe-Fadrosh E, Ivanova NN. Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 2016 06; 24(6):425-427. PMID: 27197692.
      View in: PubMed
    11. Eloe-Fadrosh E, Ivanova NN, Woyke T, Kyrpides NC. Metagenomics uncovers gaps in amplicon-based detection of microbial diversity. Nat Microbiol. 2016 Feb 01; 1:15032. PMID: 27572438.
      View in: PubMed
    12. Eloe-Fadrosh E, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, Rubin EM, Woyke T, Kyrpides NC, Ivanova NN. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nat Commun. 2016 Jan 27; 7:10476. PMID: 26814032; PMCID: PMC4737851.
    13. Eloe-Fadrosh E, Brady A, Crabtree J, Drabek EF, Ma B, Mahurkar A, Ravel J, Haverkamp M, Fiorino AM, Botelho C, Andreyeva I, Hibberd PL, Fraser CM. Functional dynamics of the gut microbiome in elderly people during probiotic consumption. MBio. 2015 Apr 14; 6(2). PMID: 25873374; PMCID: PMC4453556.
    14. Lauro FM, Eloe-Fadrosh E, Richter TK, Vitulo N, Ferriera S, Johnson JH, Bartlett DH. Ecotype diversity and conversion in Photobacterium profundum strains. PLoS One. 2014; 9(5):e96953. PMID: 24824441; PMCID: PMC4019646.
    15. Winglee K, Eloe-Fadrosh E, Gupta S, Guo H, Fraser C, Bishai W. Aerosol Mycobacterium tuberculosis infection causes rapid loss of diversity in gut microbiota. PLoS One. 2014; 9(5):e97048. PMID: 24819223; PMCID: PMC4018338.
    16. Seekatz AM, Panda A, Rasko DA, Toapanta FR, Eloe-Fadrosh E, Khan AQ, Liu Z, Shipley ST, Detolla LJ, Sztein MB, Fraser CM. Differential response of the cynomolgus macaque gut microbiota to Shigella infection. PLoS One. 2013; 8(6):e64212. PMID: 23755118; PMCID: PMC3673915.
    17. Eloe-Fadrosh E, McArthur MA, Seekatz AM, Drabek EF, Rasko DA, Sztein MB, Fraser CM. Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses. PLoS One. 2013; 8(4):e62026. PMID: 23637957; PMCID: PMC3634757.
    18. Eloe-Fadrosh E, Rasko DA. The human microbiome: from symbiosis to pathogenesis. Annu Rev Med. 2013; 64:145-63. PMID: 23327521; PMCID: PMC3731629.
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