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    Yang, Chao

    TitleComputer Senior Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentComputational Research
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-6424
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Hu W, Lin L, Zhang R, Yang C, Yang J. Highly Efficient Photocatalytic Water Splitting over Edge-Modified Phosphorene Nanoribbons. J Am Chem Soc. 2017 Nov 01; 139(43):15429-15436. PMID: 29027456.
        View in: PubMed
      2. Hu W, Lin L, Yang C. Interpolative Separable Density Fitting Decomposition for Accelerating Hybrid Density Functional Calculations with Applications to Defects in Silicon. J Chem Theory Comput. 2017 Nov 14; 13(11):5420-5431. PMID: 28960982.
        View in: PubMed
      3. Hu W, Lin L, Yang C. Projected Commutator DIIS Method for Accelerating Hybrid Functional Electronic Structure Calculations. J Chem Theory Comput. 2017 Nov 14; 13(11):5458-5467. PMID: 28937762.
        View in: PubMed
      4. Van Beeumen R, Williams-Young DB, Kasper JM, Yang C, Ng EG, Li X. A Model Order Reduction Algorithm for Estimating the Absorption Spectrum. J Chem Theory Comput. 2017 Sep 01. PMID: 28862869.
        View in: PubMed
      5. Hu W, Lin L, Banerjee AS, Vecharynski E, Yang C. Adaptively Compressed Exchange Operator for Large-Scale Hybrid Density Functional Calculations with Applications to the Adsorption of Water on Silicene. J Chem Theory Comput. 2017 Mar 14; 13(3):1188-1198. PMID: 28177229.
        View in: PubMed
      6. Banerjee AS, Lin L, Hu W, Yang C, Pask JE. Chebyshev polynomial filtered subspace iteration in the discontinuous Galerkin method for large-scale electronic structure calculations. J Chem Phys. 2016 Oct 21; 145(15):154101. PMID: 27782453.
        View in: PubMed
      7. Hu W, Lin L, Yang C, Dai J, Yang J. Edge-Modified Phosphorene Nanoflake Heterojunctions as Highly Efficient Solar Cells. Nano Lett. 2016 Mar 09; 16(3):1675-82. PMID: 26848505.
        View in: PubMed
      8. Brabec J, Yang C, Epifanovsky E, Krylov AI, Ng E. Reduced-cost sparsity-exploiting algorithm for solving coupled-cluster equations. J Comput Chem. 2016 May 05; 37(12):1059-67. PMID: 26804120.
        View in: PubMed
      9. Hu W, Lin L, Yang C. Edge reconstruction in armchair phosphorene nanoribbons revealed by discontinuous Galerkin density functional theory. Phys Chem Chem Phys. 2015 Dec 21; 17(47):31397-404. PMID: 25698178.
        View in: PubMed
      10. Hu W, Lin L, Yang C. DGDFT: A massively parallel method for large scale density functional theory calculations. J Chem Phys. 2015 Sep 28; 143(12):124110. PMID: 26428999.
        View in: PubMed
      11. Xu LJ, Lei ZC, Li J, Zong C, Yang C, Ren B. Label-free surface-enhanced Raman spectroscopy detection of DNA with single-base sensitivity. J Am Chem Soc. 2015 Apr 22; 137(15):5149-54. PMID: 25835155.
        View in: PubMed
      12. Hu W, Lin L, Yang C, Yang J. Electronic structure and aromaticity of large-scale hexagonal graphene nanoflakes. J Chem Phys. 2014 Dec 07; 141(21):214704. PMID: 25481158.
        View in: PubMed
      13. Wang DL, Song YL, Zhu Z, Li XL, Zou Y, Yang HT, Wang JJ, Yao PS, Pan RJ, Yang C, Kang DZ. Selection of DNA aptamers against epidermal growth factor receptor with high affinity and specificity. Biochem Biophys Res Commun. 2014 Oct 31; 453(4):681-5. PMID: 25242523.
        View in: PubMed
      14. Lin L, GarcĂ­a A, Huhs G, Yang C. SIESTA-PEXSI: massively parallel method for efficient and accurate ab initio materials simulation without matrix diagonalization. J Phys Condens Matter. 2014 Jul 30; 26(30):305503. PMID: 25007803.
        View in: PubMed
      15. Lin L, Chen M, Yang C, He L. Accelerating atomic orbital-based electronic structure calculation via pole expansion and selected inversion. J Phys Condens Matter. 2013 Jul 24; 25(29):295501. PMID: 23803312.
        View in: PubMed
      16. Yan L, Zhu Z, Zou Y, Huang Y, Liu D, Jia S, Xu D, Wu M, Zhou Y, Zhou S, Yang C. Target-responsive "sweet" hydrogel with glucometer readout for portable and quantitative detection of non-glucose targets. J Am Chem Soc. 2013 Mar 13; 135(10):3748-51. PMID: 23339662.
        View in: PubMed
      17. Ke G, Wang C, Ge Y, Zheng N, Zhu Z, Yang C. L-DNA molecular beacon: a safe, stable, and accurate intracellular nano-thermometer for temperature sensing in living cells. J Am Chem Soc. 2012 Nov 21; 134(46):18908-11. PMID: 23126671.
        View in: PubMed
      18. Zhang H, Jenkins G, Zou Y, Zhu Z, Yang C. Massively parallel single-molecule and single-cell emulsion reverse transcription polymerase chain reaction using agarose droplet microfluidics. Anal Chem. 2012 Apr 17; 84(8):3599-606. PMID: 22455457.
        View in: PubMed
      19. Parkinson DY, Knoechel C, Yang C, Larabell CA, Le Gros MA. Automatic alignment and reconstruction of images for soft X-ray tomography. J Struct Biol. 2012 Feb; 177(2):259-66. PMID: 22155289; PMCID: PMC3288662.
      20. Maia FR, Yang C, Marchesini S. Compressive auto-indexing in femtosecond nanocrystallography. Ultramicroscopy. 2011 Jun; 111(7):807-11. PMID: 21093986.
        View in: PubMed
      21. Chen Y, O'Donoghue MB, Huang YF, Kang H, Phillips JA, Chen X, Estevez MC, Yang C, Tan W. A surface energy transfer nanoruler for measuring binding site distances on live cell surfaces. J Am Chem Soc. 2010 Nov 24; 132(46):16559-70. PMID: 21038856; PMCID: PMC3059229.
      22. Yang C, Jiang W, Chen DH, Adiga U, Ng EG, Chiu W. Estimating contrast transfer function and associated parameters by constrained non-linear optimization. J Microsc. 2009 Mar; 233(3):391-403. PMID: 19250460; PMCID: PMC2804061.
      23. Kumaresan P, Yang C, Cronier SA, Blazej RG, Mathies RA. High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets. Anal Chem. 2008 May 15; 80(10):3522-9. PMID: 18410131.
        View in: PubMed
      24. Conlon P, Yang C, Wu Y, Chen Y, Martinez K, Kim Y, Stevens N, Marti AA, Jockusch S, Turro NJ, Tan W. Pyrene excimer signaling molecular beacons for probing nucleic acids. J Am Chem Soc. 2008 Jan 09; 130(1):336-42. PMID: 18078339; PMCID: PMC2531189.
      25. Yang C, Martinez K, Lin H, Tan W. Hybrid molecular probe for nucleic acid analysis in biological samples. J Am Chem Soc. 2006 Aug 09; 128(31):9986-7. PMID: 16881607.
        View in: PubMed
      26. Hohn M, Tang G, Goodyear G, Baldwin PR, Huang Z, Penczek PA, Yang C, Glaeser RM, Adams PD, Ludtke SJ. SPARX, a new environment for Cryo-EM image processing. J Struct Biol. 2007 Jan; 157(1):47-55. PMID: 16931051.
        View in: PubMed
      27. Yang C, Penczek PA, Leith A, Asturias FJ, Ng EG, Glaeser RM, Frank J. The parallelization of SPIDER on distributed-memory computers using MPI. J Struct Biol. 2007 Jan; 157(1):240-9. PMID: 16859923.
        View in: PubMed
      28. Wang L, Yang C, Medley CD, Benner SA, Tan W. Locked nucleic acid molecular beacons. J Am Chem Soc. 2005 Nov 16; 127(45):15664-5. PMID: 16277483.
        View in: PubMed
      29. Yang C, Lin H, Tan W. Molecular assembly of superquenchers in signaling molecular interactions. J Am Chem Soc. 2005 Sep 21; 127(37):12772-3. PMID: 16159250; PMCID: PMC2536687.
      30. Yang C, Ng EG, Penczek PA. Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm. J Struct Biol. 2005 Jan; 149(1):53-64. PMID: 15629657.
        View in: PubMed

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