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    Yang, Chao

    TitleComputer Senior Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentComputational Research
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-6424
    vCardDownload vCard

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      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Hu W, Lin L, Banerjee AS, Vecharynski E, Yang C. Adaptively Compressed Exchange Operator for Large-Scale Hybrid Density Functional Calculations with Applications to the Adsorption of Water on Silicene. J Chem Theory Comput. 2017 Mar 14; 13(3):1188-1198. PMID: 28177229.
        View in: PubMed
      2. Banerjee AS, Lin L, Hu W, Yang C, Pask JE. Chebyshev polynomial filtered subspace iteration in the discontinuous Galerkin method for large-scale electronic structure calculations. J Chem Phys. 2016 Oct 21; 145(15):154101. PMID: 27782453.
        View in: PubMed
      3. Hu W, Lin L, Yang C, Dai J, Yang J. Edge-Modified Phosphorene Nanoflake Heterojunctions as Highly Efficient Solar Cells. Nano Lett. 2016 Mar 09; 16(3):1675-82. PMID: 26848505.
        View in: PubMed
      4. Brabec J, Yang C, Epifanovsky E, Krylov AI, Ng E. Reduced-cost sparsity-exploiting algorithm for solving coupled-cluster equations. J Comput Chem. 2016 May 05; 37(12):1059-67. PMID: 26804120.
        View in: PubMed
      5. Hu W, Lin L, Yang C. Edge reconstruction in armchair phosphorene nanoribbons revealed by discontinuous Galerkin density functional theory. Phys Chem Chem Phys. 2015 Dec 21; 17(47):31397-404. PMID: 25698178.
        View in: PubMed
      6. Hu W, Lin L, Yang C. DGDFT: A massively parallel method for large scale density functional theory calculations. J Chem Phys. 2015 Sep 28; 143(12):124110. PMID: 26428999.
        View in: PubMed
      7. Hu W, Lin L, Yang C, Yang J. Electronic structure and aromaticity of large-scale hexagonal graphene nanoflakes. J Chem Phys. 2014 Dec 7; 141(21):214704. PMID: 25481158.
        View in: PubMed
      8. Lin L, GarcĂ­a A, Huhs G, Yang C. SIESTA-PEXSI: massively parallel method for efficient and accurate ab initio materials simulation without matrix diagonalization. J Phys Condens Matter. 2014 Jul 30; 26(30):305503. PMID: 25007803.
        View in: PubMed
      9. Lin L, Chen M, Yang C, He L. Accelerating atomic orbital-based electronic structure calculation via pole expansion and selected inversion. J Phys Condens Matter. 2013 Jul 24; 25(29):295501. PMID: 23803312.
        View in: PubMed
      10. Zhang H, Jenkins G, Zou Y, Zhu Z, Yang C. Massively parallel single-molecule and single-cell emulsion reverse transcription polymerase chain reaction using agarose droplet microfluidics. Anal Chem. 2012 Apr 17; 84(8):3599-606. PMID: 22455457.
        View in: PubMed
      11. Parkinson DY, Knoechel C, Yang C, Larabell CA, Le Gros MA. Automatic alignment and reconstruction of images for soft X-ray tomography. J Struct Biol. 2012 Feb; 177(2):259-66. PMID: 22155289; PMCID: PMC3288662.
      12. Maia FR, Yang C, Marchesini S. Compressive auto-indexing in femtosecond nanocrystallography. Ultramicroscopy. 2011 Jun; 111(7):807-11. PMID: 21093986.
        View in: PubMed
      13. Yang C, Jiang W, Chen DH, Adiga U, Ng EG, Chiu W. Estimating contrast transfer function and associated parameters by constrained non-linear optimization. J Microsc. 2009 Mar; 233(3):391-403. PMID: 19250460; PMCID: PMC2804061.
      14. Kumaresan P, Yang C, Cronier SA, Blazej RG, Mathies RA. High-throughput single copy DNA amplification and cell analysis in engineered nanoliter droplets. Anal Chem. 2008 May 15; 80(10):3522-9. PMID: 18410131.
        View in: PubMed
      15. Hohn M, Tang G, Goodyear G, Baldwin PR, Huang Z, Penczek PA, Yang C, Glaeser RM, Adams PD, Ludtke SJ. SPARX, a new environment for Cryo-EM image processing. J Struct Biol. 2007 Jan; 157(1):47-55. PMID: 16931051.
        View in: PubMed
      16. Yang C, Penczek PA, Leith A, Asturias FJ, Ng EG, Glaeser RM, Frank J. The parallelization of SPIDER on distributed-memory computers using MPI. J Struct Biol. 2007 Jan; 157(1):240-9. PMID: 16859923.
        View in: PubMed
      17. Yang C, Ng EG, Penczek PA. Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm. J Struct Biol. 2005 Jan; 149(1):53-64. PMID: 15629657.
        View in: PubMed

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