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    Larabell, Carolyn

    TitleBiologist Faculty
    SchoolLawrence Berkeley National Lab
    DepartmentMolecular Biophys & Integ Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-5890
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Aho V, Myllys M, Ruokolainen V, Hakanen S, Mäntylä E, Virtanen J, Hukkanen V, Kühn T, Timonen J, Mattila K, Larabell C, Vihinen-Ranta M. Chromatin organization regulates viral egress dynamics. Sci Rep. 2017 Jun 16; 7(1):3692. PMID: 28623258.
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      2. Roth MS, Cokus SJ, Gallaher SD, Walter A, Lopez D, Erickson E, Endelman B, Westcott D, Larabell C, Merchant SS, Pellegrini M, Niyogi KK. Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production. Proc Natl Acad Sci U S A. 2017 May 23; 114(21):E4296-E4305. PMID: 28484037.
        View in: PubMed
      3. Le Gros MA, Clowney EJ, Magklara A, Yen A, Markenscoff-Papadimitriou E, Colquitt B, Myllys M, Kellis M, Lomvardas S, Larabell C. Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo. Cell Rep. 2016 Nov 15; 17(8):2125-2136. PMID: 27851973.
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      4. Ekman AA, Chen JH, Guo J, McDermott G, Le Gros MA, Larabell C. Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell. Biol Cell. 2017 Jan; 109(1):24-38. PMID: 27690365.
        View in: PubMed
      5. Darrow MC, Zhang Y, Cinquin BP, Smith EA, Boudreau R, Rochat RH, Schmid MF, Xia Y, Larabell C, Chiu W. Visualizing red blood cell sickling and the effects of inhibition of sphingosine kinase 1 using soft X-ray tomography. J Cell Sci. 2016 Sep 15; 129(18):3511-7. PMID: 27505892.
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      6. Hammel M, Amlanjyoti D, Reyes FE, Chen JH, Parpana R, Tang HY, Larabell C, Tainer JA, Adhya S. HU multimerization shift controls nucleoid compaction. Sci Adv. 2016 07; 2(7):e1600650. PMID: 27482541; PMCID: PMC4966879.
      7. Myllys M, Ruokolainen V, Aho V, Smith EA, Hakanen S, Peri P, Salvetti A, Timonen J, Hukkanen V, Larabell C, Vihinen-Ranta M. Herpes simplex virus 1 induces egress channels through marginalized host chromatin. Sci Rep. 2016 Jun 28; 6:28844. PMID: 27349677.
        View in: PubMed
      8. Tjong H, Li W, Kalhor R, Dai C, Hao S, Gong K, Zhou Y, Li H, Zhou XJ, Le Gros MA, Larabell C, Chen L, Alber F. Population-based 3D genome structure analysis reveals driving forces in spatial genome organization. Proc Natl Acad Sci U S A. 2016 Mar 22; 113(12):E1663-72. PMID: 26951677; PMCID: PMC4812752.
      9. Ugarte F, Sousae R, Cinquin B, Martin EW, Krietsch J, Sanchez G, Inman M, Tsang H, Warr M, Passegué E, Larabell C, Forsberg EC. Progressive Chromatin Condensation and H3K9 Methylation Regulate the Differentiation of Embryonic and Hematopoietic Stem Cells. Stem Cell Reports. 2015 Nov 10; 5(5):728-40. PMID: 26489895; PMCID: PMC4649257.
      10. Elgass KD, Smith EA, LeGros MA, Larabell C, Ryan MT. Analysis of ER-mitochondria contacts using correlative fluorescence microscopy and soft X-ray tomography of mammalian cells. J Cell Sci. 2015 Aug 01; 128(15):2795-804. PMID: 26101352; PMCID: PMC4540952.
      11. Do M, Isaacson SA, McDermott G, Le Gros MA, Larabell C. Imaging and characterizing cells using tomography. Arch Biochem Biophys. 2015 Sep 01; 581:111-21. PMID: 25602704; PMCID: PMC4506273.
      12. Walters AD, May CK, Dauster ES, Cinquin BP, Smith EA, Robellet X, D'Amours D, Larabell C, Cohen-Fix O. The yeast polo kinase Cdc5 regulates the shape of the mitotic nucleus. Curr Biol. 2014 Dec 01; 24(23):2861-7. PMID: 25454593; PMCID: PMC4255140.
      13. Smith EA, McDermott G, Do M, Leung K, Panning B, Le Gros MA, Larabell C. Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies. Biophys J. 2014 Oct 21; 107(8):1988-96. PMID: 25418180; PMCID: PMC4213715.
      14. Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ. A 3D cellular context for the macromolecular world. Nat Struct Mol Biol. 2014 Oct; 21(10):841-5. PMID: 25289590; PMCID: PMC4346196.
      15. Le Gros MA, McDermott G, Cinquin BP, Smith EA, Do M, Chao WL, Naulleau PP, Larabell C. Biological soft X-ray tomography on beamline 2.1 at the Advanced Light Source. J Synchrotron Radiat. 2014 Nov; 21(Pt 6):1370-7. PMID: 25343808; PMCID: PMC4211134.
      16. Cinquin BP, Do M, McDermott G, Walters AD, Myllys M, Smith EA, Cohen-Fix O, Le Gros MA, Larabell C. Putting molecules in their place. J Cell Biochem. 2014 Feb; 115(2):209-16. PMID: 23966233; PMCID: PMC3865101.
      17. Smith EA, Cinquin BP, Do M, McDermott G, Le Gros MA, Larabell C. Correlative cryogenic tomography of cells using light and soft x-rays. Ultramicroscopy. 2014 Aug; 143:33-40. PMID: 24355261; PMCID: PMC4013260.
      18. Isaacson SA, Larabell C, Le Gros MA, McQueen DM, Peskin CS. The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites. Bull Math Biol. 2013 Nov; 75(11):2093-117. PMID: 23955281; PMCID: PMC3934756.
      19. Smith EA, Cinquin BP, McDermott G, Le Gros MA, Parkinson DY, Kim HT, Larabell C. Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities. J Struct Biol. 2013 Oct; 184(1):12-20. PMID: 23531637; PMCID: PMC3758393.
      20. Parkinson DY, Epperly LR, McDermott G, Le Gros MA, Boudreau RM, Larabell C. Nanoimaging cells using soft X-ray tomography. Methods Mol Biol. 2013; 950:457-81. PMID: 23086890.
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      21. Clowney EJ, LeGros MA, Mosley CP, Clowney FG, Markenskoff-Papadimitriou EC, Myllys M, Barnea G, Larabell C, Lomvardas S. Nuclear aggregation of olfactory receptor genes governs their monogenic expression. Cell. 2012 Nov 09; 151(4):724-37. PMID: 23141535; PMCID: PMC3659163.
      22. McDermott G, Fox DM, Epperly L, Wetzler M, Barron AE, Le Gros MA, Larabell C. Visualizing and quantifying cell phenotype using soft X-ray tomography. Bioessays. 2012 Apr; 34(4):320-7. PMID: 22290620; PMCID: PMC3343367.
      23. McDermott G, Le Gros MA, Larabell C. Visualizing cell architecture and molecular location using soft x-ray tomography and correlated cryo-light microscopy. Annu Rev Phys Chem. 2012; 63:225-39. PMID: 22242730; PMCID: PMC3349341.
      24. Parkinson DY, Knoechel C, Yang C, Larabell C, Le Gros MA. Automatic alignment and reconstruction of images for soft X-ray tomography. J Struct Biol. 2012 Feb; 177(2):259-66. PMID: 22155289; PMCID: PMC3288662.
      25. Hanssen E, Knoechel C, Dearnley M, Dixon MW, Le Gros M, Larabell C, Tilley L. Soft X-ray microscopy analysis of cell volume and hemoglobin content in erythrocytes infected with asexual and sexual stages of Plasmodium falciparum. J Struct Biol. 2012 Feb; 177(2):224-32. PMID: 21945653; PMCID: PMC3349340.
      26. Uchida M, Sun Y, McDermott G, Knoechel C, Le Gros MA, Parkinson D, Drubin DG, Larabell C. Quantitative analysis of yeast internal architecture using soft X-ray tomography. Yeast. 2011 Mar; 28(3):227-36. PMID: 21360734; PMCID: PMC3404734.
      27. Larabell C, Nugent KA. Imaging cellular architecture with X-rays. Curr Opin Struct Biol. 2010 Oct; 20(5):623-31. PMID: 20869868; PMCID: PMC3268817.
      28. Hanssen E, Knoechel C, Klonis N, Abu-Bakar N, Deed S, LeGros M, Larabell C, Tilley L. Cryo transmission X-ray imaging of the malaria parasite, P. falciparum. J Struct Biol. 2011 Jan; 173(1):161-8. PMID: 20826218; PMCID: PMC3005799.
      29. Uchida M, McDermott G, Wetzler M, Le Gros MA, Myllys M, Knoechel C, Barron AE, Larabell C. Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans. Proc Natl Acad Sci U S A. 2009 Nov 17; 106(46):19375-80. PMID: 19880740; PMCID: PMC2780763.
      30. McDermott G, Le Gros MA, Knoechel CG, Uchida M, Larabell C. Soft X-ray tomography and cryogenic light microscopy: the cool combination in cellular imaging. Trends Cell Biol. 2009 Nov; 19(11):587-95. PMID: 19818625; PMCID: PMC3276488.
      31. Le Gros MA, McDermott G, Uchida M, Knoechel CG, Larabell C. High-aperture cryogenic light microscopy. J Microsc. 2009 Jul; 235(1):1-8. PMID: 19566622; PMCID: PMC3350647.
      32. Ashcroft JM, Gu W, Zhang T, Hughes SM, Hartman KB, Hofmann C, Kanaras AG, Kilcoyne DA, Le Gros M, Yin Y, Alivisatos AP, Larabell C. TiO2 nanoparticles as a soft X-ray molecular probe. Chem Commun (Camb). 2008 Jun 07; (21):2471-3. PMID: 18491018; PMCID: PMC3355471.
      33. Parkinson DY, McDermott G, Etkin LD, Le Gros MA, Larabell C. Quantitative 3-D imaging of eukaryotic cells using soft X-ray tomography. J Struct Biol. 2008 Jun; 162(3):380-6. PMID: 18387313; PMCID: PMC2505111.
      34. Gu W, Etkin LD, Le Gros MA, Larabell C. X-ray tomography of Schizosaccharomyces pombe. Differentiation. 2007 Jul; 75(6):529-35. PMID: 17459084.
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      35. Traverso EE, Cho MS, Wu CF, Sater AK, Larabell C, Kloc M, Etkin LD. Disruption of the dynamic sub-cellular localization of the Xenopus tumorhead protein causes embryonic lethality at the early gastrula transition. Differentiation. 2007 Dec; 75(10):947-56. PMID: 17459085.
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      36. Chan AP, Kloc M, Larabell C, LeGros M, Etkin LD. The maternally localized RNA fatvg is required for cortical rotation and germ cell formation. Mech Dev. 2007 May; 124(5):350-63. PMID: 17376659; PMCID: PMC2435194.
      37. Tang YJ, Ashcroft JM, Chen D, Min G, Kim CH, Murkhejee B, Larabell C, Keasling JD, Chen FF. Charge-associated effects of fullerene derivatives on microbial structural integrity and central metabolism. Nano Lett. 2007 Mar; 7(3):754-60. PMID: 17288489.
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      38. Fu A, Gu W, Boussert B, Koski K, Gerion D, Manna L, Le Gros M, Larabell C, Alivisatos AP. Semiconductor quantum rods as single molecule fluorescent biological labels. Nano Lett. 2007 Jan; 7(1):179-82. PMID: 17212460; PMCID: PMC3984543.
      39. Gu W, Pellegrino T, Parak WJ, Boudreau R, Le Gros MA, Alivisatos AP, Larabell C. Measuring cell motility using quantum dot probes. Methods Mol Biol. 2007; 374:125-31. PMID: 17237535.
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      40. Fu A, Gu W, Larabell C, Alivisatos AP. Semiconductor nanocrystals for biological imaging. Curr Opin Neurobiol. 2005 Oct; 15(5):568-75. PMID: 16150591.
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      41. Le Gros MA, McDermott G, Larabell C. X-ray tomography of whole cells. Curr Opin Struct Biol. 2005 Oct; 15(5):593-600. PMID: 16153818.
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      42. Gu W, Pellegrino T, Parak WJ, Boudreau R, Le Gros MA, Gerion D, Alivisatos AP, Larabell C. Quantum-dot-based cell motility assay. Sci STKE. 2005 Jun 28; 2005(290):pl5. PMID: 15985641.
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      43. Alivisatos AP, Gu W, Larabell C. Quantum dots as cellular probes. Annu Rev Biomed Eng. 2005; 7:55-76. PMID: 16004566.
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      44. Larabell C, Rowning BA, Moon RT. A PKC wave follows the calcium wave after activation of Xenopus eggs. Differentiation. 2004 Feb; 72(1):41-7. PMID: 15008825.
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      45. Larabell C, Le Gros MA. X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution. Mol Biol Cell. 2004 Mar; 15(3):957-62. PMID: 14699066; PMCID: PMC363052.
      46. Pellegrino T, Parak WJ, Boudreau R, Le Gros MA, Gerion D, Alivisatos AP, Larabell C. Quantum dot-based cell motility assay. Differentiation. 2003 Dec; 71(9-10):542-8. PMID: 14686951.
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      47. Weaver C, Farr GH, Pan W, Rowning BA, Wang J, Mao J, Wu D, Li L, Larabell C, Kimelman D. GBP binds kinesin light chain and translocates during cortical rotation in Xenopus eggs. Development. 2003 Nov; 130(22):5425-36. PMID: 14507779.
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      48. Johnson N, Krebs M, Boudreau R, Giorgi G, LeGros M, Larabell C. Actin-filled nuclear invaginations indicate degree of cell de-differentiation. Differentiation. 2003 Sep; 71(7):414-24. PMID: 12969334.
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      49. Miao J, Hodgson KO, Ishikawa T, Larabell C, LeGros MA, Nishino Y. Imaging whole Escherichia coli bacteria by using single-particle x-ray diffraction. Proc Natl Acad Sci U S A. 2003 Jan 07; 100(1):110-2. PMID: 12518059; PMCID: PMC140897.
      50. Ziegelbauer J, Shan B, Yager D, Larabell C, Hoffmann B, Tjian R. Transcription factor MIZ-1 is regulated via microtubule association. Mol Cell. 2001 Aug; 8(2):339-49. PMID: 11545736.
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      51. Meyer-Ilse W, Hamamoto D, Nair A, Lelièvre SA, Denbeaux G, Johnson L, Pearson AL, Yager D, Legros MA, Larabell C. High resolution protein localization using soft X-ray microscopy. J Microsc. 2001 Mar; 201(Pt 3):395-403. PMID: 11240856.
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      52. Nakamura H, Wu C, Kuang J, Larabell C, Etkin LD. XCS-1, a maternally expressed gene product involved in regulating mitosis in Xenopus. J Cell Sci. 2000 Jul; 113 ( Pt 13):2497-505. PMID: 10852828.
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      53. Taunton J, Rowning BA, Coughlin ML, Wu M, Moon RT, Mitchison TJ, Larabell C. Actin-dependent propulsion of endosomes and lysosomes by recruitment of N-WASP. J Cell Biol. 2000 Feb 07; 148(3):519-30. PMID: 10662777; PMCID: PMC2174808.
      54. Larabell C. Confocal microscopy of live Xenopus oocytes, eggs, and embryos. Methods Mol Biol. 2000; 135:175-82. PMID: 10791314.
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      55. Miller JR, Rowning BA, Larabell C, Yang-Snyder JA, Bates RL, Moon RT. Establishment of the dorsal-ventral axis in Xenopus embryos coincides with the dorsal enrichment of dishevelled that is dependent on cortical rotation. J Cell Biol. 1999 Jul 26; 146(2):427-37. PMID: 10427095; PMCID: PMC2156185.
      56. Lelièvre SA, Weaver VM, Nickerson JA, Larabell C, Bhaumik A, Petersen OW, Bissell MJ. Tissue phenotype depends on reciprocal interactions between the extracellular matrix and the structural organization of the nucleus. Proc Natl Acad Sci U S A. 1998 Dec 08; 95(25):14711-6. PMID: 9843954; PMCID: PMC24514.
      57. Wang F, Weaver VM, Petersen OW, Larabell C, Dedhar S, Briand P, Lupu R, Bissell MJ. Reciprocal interactions between beta1-integrin and epidermal growth factor receptor in three-dimensional basement membrane breast cultures: a different perspective in epithelial biology. Proc Natl Acad Sci U S A. 1998 Dec 08; 95(25):14821-6. PMID: 9843973; PMCID: PMC24533.
      58. Kloc M, Larabell C, Chan AP, Etkin LD. Contribution of METRO pathway localized molecules to the organization of the germ cell lineage. Mech Dev. 1998 Jul; 75(1-2):81-93. PMID: 9739112.
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      59. Krauss SW, Larabell C, Lockett S, Gascard P, Penman S, Mohandas N, Chasis JA. Structural protein 4.1 in the nucleus of human cells: dynamic rearrangements during cell division. J Cell Biol. 1997 Apr 21; 137(2):275-89. PMID: 9128242; PMCID: PMC2139783.
      60. Weaver VM, Petersen OW, Wang F, Larabell C, Briand P, Damsky C, Bissell MJ. Reversion of the malignant phenotype of human breast cells in three-dimensional culture and in vivo by integrin blocking antibodies. J Cell Biol. 1997 Apr 07; 137(1):231-45. PMID: 9105051; PMCID: PMC2139858.
      61. Larabell C, Torres M, Rowning BA, Yost C, Miller JR, Wu M, Kimelman D, Moon RT. Establishment of the dorso-ventral axis in Xenopus embryos is presaged by early asymmetries in beta-catenin that are modulated by the Wnt signaling pathway. J Cell Biol. 1997 Mar 10; 136(5):1123-36. PMID: 9060476; PMCID: PMC2132470.
      62. Rowning BA, Wells J, Wu M, Gerhart JC, Moon RT, Larabell C. Microtubule-mediated transport of organelles and localization of beta-catenin to the future dorsal side of Xenopus eggs. Proc Natl Acad Sci U S A. 1997 Feb 18; 94(4):1224-9. PMID: 9037034; PMCID: PMC19772.
      63. Kloc M, Larabell C, Etkin LD. Elaboration of the messenger transport organizer pathway for localization of RNA to the vegetal cortex of Xenopus oocytes. Dev Biol. 1996 Nov 25; 180(1):119-30. PMID: 8948579.
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      64. Larabell C, Rowning BA, Wells J, Wu M, Gerhart JC. Confocal microscopy analysis of living Xenopus eggs and the mechanism of cortical rotation. Development. 1996 Apr; 122(4):1281-9. PMID: 8620855.
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      65. Larabell C. Cortical cytoskeleton of the Xenopus oocyte, egg, and early embryo. Curr Top Dev Biol. 1995; 31:433-53. PMID: 8746672.
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      66. Gallicano GI, Larabell C, McGaughey RW, Capco DG. Novel cytoskeletal elements in mammalian eggs are composed of a unique arrangement of intermediate filaments. Mech Dev. 1994 Mar; 45(3):211-26. PMID: 8011554.
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      67. Larabell C, Fukuyama K, Epstein WL. Desmosome differentiation during epidermal cornification: new observations obtained from intermediate voltage electron microscopy. J Invest Dermatol. 1993 Jul; 101(1):103-4. PMID: 8331292.
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      68. Bonnell BS, Larabell C, Chandler DE. The sea urchin egg jelly coat is a three-dimensional fibrous network as seen by intermediate voltage electron microscopy and deep etching analysis. Mol Reprod Dev. 1993 Jun; 35(2):181-8. PMID: 8318223.
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      69. Larabell C. A new technique for isolation and visualization of the Xenopus egg cortex reveals a complex cytoskeleton. J Struct Biol. 1993 Mar-Apr; 110(2):154-9. PMID: 8338718.
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      70. Capco DG, Gallicano GI, McGaughey RW, Downing KH, Larabell C. Cytoskeletal sheets of mammalian eggs and embryos: a lattice-like network of intermediate filaments. Cell Motil Cytoskeleton. 1993; 24(2):85-99. PMID: 8440027.
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      71. Lindsay LL, Larabell C, Hedrick JL. Localization of a chymotrypsin-like protease to the perivitelline space of Xenopus laevis eggs. Dev Biol. 1992 Dec; 154(2):433-6. PMID: 1426648.
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      72. Larabell C, Nuccitelli R. Inositol lipid hydrolysis contributes to the Ca2+ wave in the activating egg of Xenopus laevis. Dev Biol. 1992 Oct; 153(2):347-55. PMID: 1327924.
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      73. Smith NR, Benson S, Larabell C. An in-vitro extracellular matrix model system to visualize whole cells with intermediate voltage electron microscopy (IVEM). J Electron Microsc Tech. 1991 Nov; 19(3):380-1. PMID: 1795190.
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      74. Larabell C, Chandler DE. Fertilization-induced changes in the vitelline envelope of echinoderm and amphibian eggs: self-assembly of an extracellular matrix. J Electron Microsc Tech. 1991 Mar; 17(3):294-318. PMID: 2045963.
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      75. Dersch MA, Bement WM, Larabell C, Mecca MD, Capco DG. Cortical membrane-trafficking during the meiotic resumption of Xenopus laevis oocytes. Cell Tissue Res. 1991 Feb; 263(2):375-83. PMID: 2007258.
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      76. Larabell C, Chandler DE. Stepwise transformation of the vitelline envelope of Xenopus eggs at activation: a quick-freeze, deep-etch analysis. Dev Biol. 1990 Jun; 139(2):263-8. PMID: 2338169.
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      77. Larabell C, Chandler DE. Quick-freeze, deep-etch, rotary-shadow views of the extracellular matrix and cortical cytoskeleton of Xenopus laevis eggs. J Electron Microsc Tech. 1989 Nov; 13(3):228-43. PMID: 2585120.
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      78. Racowsky C, Baldwin KV, Larabell C, DeMarais AA, Kazilek CJ. Down-regulation of membrana granulosa cell gap junctions is correlated with irreversible commitment to resume meiosis in golden Syrian hamster oocytes. Eur J Cell Biol. 1989 Aug; 49(2):244-51. PMID: 2776774.
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      79. Larabell C, Chandler DE. In vitro formation of the "S" layer, a unique component of the fertilization envelope in Xenopus laevis eggs. Dev Biol. 1988 Nov; 130(1):356-64. PMID: 3181634.
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      80. Larabell C, Chandler DE. The extracellular matrix of Xenopus laevis eggs: a quick-freeze, deep-etch analysis of its modification at fertilization. J Cell Biol. 1988 Aug; 107(2):731-41. PMID: 3417770; PMCID: PMC2115231.
      81. Larabell C, Chandler DE. Freeze-fracture analysis of structural reorganization during meiotic maturation in oocytes of Xenopus laevis. Cell Tissue Res. 1988 Jan; 251(1):129-36. PMID: 3342433.
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