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    Snijders, Antoine

    TitleBiologist Research Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentBiological Systems & Eng
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-7235
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Turker MS, Grygoryev D, Lasarev M, Ohlrich A, Rwatambuga FA, Johnson S, Dan C, Eckelmann B, Hryciw G, Mao JH, Snijders A, Gauny S, Kronenberg A. Simulated space radiation-induced mutants in the mouse kidney display widespread genomic change. PLoS One. 2017; 12(7):e0180412. PMID: 28683078.
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      2. Hang B, Wang P, Zhao Y, Sarker A, Chenna A, Xia Y, Snijders A, Mao JH. Adverse Health Effects of Thirdhand Smoke: From Cell to Animal Models. Int J Mol Sci. 2017 Apr 28; 18(5). PMID: 28452951.
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      3. Yan H, Bi L, Wang Y, Zhang X, Hou Z, Wang Q, Snijders A, Mao JH. Integrative analysis of multi-omics data reveals distinct impacts of DDB1-CUL4 associated factors in human lung adenocarcinomas. Sci Rep. 2017 Mar 23; 7(1):333. PMID: 28336923.
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      4. Mao XY, Lee MJ, Zhu J, Zhu C, Law SM, Snijders A. Genome-wide screen identifies a novel prognostic signature for breast cancer survival. Oncotarget. 2017 Feb 21; 8(8):14003-14016. PMID: 28122328.
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      5. Hang B, Snijders A, Huang Y, Schick SF, Wang P, Xia Y, Havel C, Jacob P, Benowitz N, Destaillats H, Gundel LA, Mao JH. Early exposure to thirdhand cigarette smoke affects body mass and the development of immunity in mice. Sci Rep. 2017 Feb 03; 7:41915. PMID: 28157226.
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      6. Snijders A, Lee SY, Hang B, Hao W, Bissell MJ, Mao JH. FAM83 family oncogenes are broadly involved in human cancers: an integrative multi-omics approach. Mol Oncol. 2017 Feb; 11(2):167-179. PMID: 28078827.
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      7. Snijders A, Langley SA, Kim YM, Brislawn CJ, Noecker C, Zink EM, Fansler SJ, Casey CP, Miller DR, Huang Y, Karpen GH, Celniker SE, Brown JB, Borenstein E, Jansson JK, Metz TO, Mao JH. Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome. Nat Microbiol. 2016 Nov 28; 2:16221. PMID: 27892936.
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      8. Snijders A, Mao JH. Multi-omics approach to infer cancer therapeutic targets on chromosome 20q across tumor types. Adv Mod Oncol Res. 2016; 2(4):215-223. PMID: 27642640.
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      9. Sridharan DM, Asaithamby A, Blattnig SR, Costes SV, Doetsch PW, Dynan WS, Hahnfeldt P, Hlatky L, Kidane Y, Kronenberg A, Naidu MD, Peterson LE, Plante I, Ponomarev AL, Saha J, Snijders A, Srinivasan K, Tang J, Werner E, Pluth JM. Evaluating biomarkers to model cancer risk post cosmic ray exposure. Life Sci Space Res (Amst). 2016 Jun; 9:19-47. PMID: 27345199.
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      10. Snijders A, Mao JH. Co-Expression Network Analysis of Fbxw7-Associated LncRNAs Reveals Their Functions in Radiation-Induced Thymic Lymphoma. Insights Cancer Res. 2016; 1:1-5. PMID: 27376155.
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      11. Snijders A, Liu Y, Su L, Huang Y, Mao JH. Expression profiling reveals transcriptional regulation by Fbxw7/mTOR pathway in radiation-induced mouse thymic lymphomas. Oncotarget. 2015 Dec 29; 6(42):44794-805. PMID: 26575021; PMCID: PMC4792592.
      12. Mao JH, Langley SA, Huang Y, Hang M, Bouchard KE, Celniker SE, Brown JB, Jansson JK, Karpen GH, Snijders A. Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice. Sci Rep. 2015 Nov 09; 5:16247. PMID: 26548763; PMCID: PMC4637864.
      13. Mao JH, Snijders A. Low-dose radiation cancer susceptibility models. Aging (Albany NY). 2015 Jun; 7(6):352-3. PMID: 26143074; PMCID: PMC4505158.
      14. Zhang P, Lo A, Huang Y, Huang G, Liang G, Mott J, Karpen GH, Blakely EA, Bissell MJ, Barcellos-Hoff MH, Snijders A, Mao JH. Identification of genetic loci that control mammary tumor susceptibility through the host microenvironment. Sci Rep. 2015 Mar 09; 5:8919. PMID: 25747469; PMCID: PMC4352890.
      15. Tang J, Huang Y, Nguyen DH, Costes SV, Snijders A, Mao JH. Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation. Int J Genomics. 2015; 2015:461038. PMID: 25802832; PMCID: PMC4353441.
      16. Sridharan DM, Asaithamby A, Bailey SM, Costes SV, Doetsch PW, Dynan WS, Kronenberg A, Rithidech KN, Saha J, Snijders A, Werner E, Wiese C, Cucinotta FA, Pluth JM. Understanding cancer development processes after HZE-particle exposure: roles of ROS, DNA damage repair and inflammation. Radiat Res. 2015 Jan; 183(1):1-26. PMID: 25564719.
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      17. Hang M, Huang Y, Snijders A, Mao JH. Genetic background influences loss of heterozygosity patterns in radiation-induced mouse thymic lymphoma. J Nat Sci. 2015; 1(5):e96. PMID: 25932465.
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      18. Snijders A, Mannion BJ, Leung SG, Moon SC, Kronenberg A, Wiese C. Micronucleus formation in human keratinocytes is dependent on radiation quality and tissue architecture. Environ Mol Mutagen. 2015 Jan; 56(1):22-31. PMID: 25041929.
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      19. Snijders A, Langley S, Mao JH, Bhatnagar S, Bjornstad KA, Rosen CJ, Lo A, Huang Y, Blakely EA, Karpen GH, Bissell MJ, Wyrobek AJ. An interferon signature identified by RNA-sequencing of mammary tissues varies across the estrous cycle and is predictive of metastasis-free survival. Oncotarget. 2014 Jun 30; 5(12):4011-25. PMID: 24994117; PMCID: PMC4147302.
      20. Kim D, Marchetti F, Chen Z, Zaric S, Wilson RJ, Hall DA, Gaster RS, Lee JR, Wang J, Osterfeld SJ, Yu H, White RM, Blakely WF, Peterson LE, Bhatnagar S, Mannion B, Tseng S, Roth K, Coleman M, Snijders A, Wyrobek AJ, Wang SX. Nanosensor dosimetry of mouse blood proteins after exposure to ionizing radiation. Sci Rep. 2013; 3:2234. PMID: 23868657; PMCID: PMC3715761.
      21. Budworth H, Snijders A, Marchetti F, Mannion B, Bhatnagar S, Kwoh E, Tan Y, Wang SX, Blakely WF, Coleman M, Peterson L, Wyrobek AJ. DNA repair and cell cycle biomarkers of radiation exposure and inflammation stress in human blood. PLoS One. 2012; 7(11):e48619. PMID: 23144912; PMCID: PMC3492462.
      22. Snijders A, Marchetti F, Bhatnagar S, Duru N, Han J, Hu Z, Mao JH, Gray JW, Wyrobek AJ. Genetic differences in transcript responses to low-dose ionizing radiation identify tissue functions associated with breast cancer susceptibility. PLoS One. 2012; 7(10):e45394. PMID: 23077491; PMCID: PMC3471924.
      23. Bhattacharya A, Roy R, Snijders A, Hamilton G, Paquette J, Tokuyasu T, Bengtsson H, Jordan RC, Olshen AB, Pinkel D, Schmidt BL, Albertson DG. Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis. Clin Cancer Res. 2011 Nov 15; 17(22):7024-34. PMID: 22068658; PMCID: PMC3226754.
      24. Nowee ME, Seeber LM, Horrée N, Snijders A, Van Diest PJ, Verheijen RH, Dorsman JC. Array comparative genomic hybridization analysis indicates that serous carcinomas of the ovary, fallopian tube and endometrium are distinct entities. Histopathology. 2010 Oct; 57(4):634-7. PMID: 20955390.
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      25. Kuijper A, Snijders A, Berns EM, Kuenen-Boumeester V, van der Wall E, Albertson DG, van Diest PJ. Genomic profiling by array comparative genomic hybridization reveals novel DNA copy number changes in breast phyllodes tumours. Cell Oncol. 2009; 31(1):31-9. PMID: 19096148; PMCID: PMC4618888.
      26. Snijders A, Huey B, Connelly ST, Roy R, Jordan RC, Schmidt BL, Albertson DG. Stromal control of oncogenic traits expressed in response to the overexpression of GLI2, a pleiotropic oncogene. Oncogene. 2009 Feb 05; 28(5):625-37. PMID: 19015636; PMCID: PMC2643346.
      27. Snijders A, Hermsen MA, Baughman J, Buffart TE, Huey B, Gajduskova P, Roydasgupta R, Tokuyasu T, Meijer GA, Fridlyand J, Albertson DG. Acquired genomic aberrations associated with methotrexate resistance vary with background genomic instability. Genes Chromosomes Cancer. 2008 Jan; 47(1):71-83. PMID: 17943968.
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      28. Nowee ME, Snijders A, Rockx DA, de Wit RM, Kosma VM, Hämäläinen K, Schouten JP, Verheijen RH, van Diest PJ, Albertson DG, Dorsman JC. DNA profiling of primary serous ovarian and fallopian tube carcinomas with array comparative genomic hybridization and multiplex ligation-dependent probe amplification. J Pathol. 2007 Sep; 213(1):46-55. PMID: 17668415.
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      29. Byrd KN, Huey B, Roydasgupta R, Fridlyand J, Snijders A, Albertson DG. FBXW7 and DNA copy number instability. Breast Cancer Res Treat. 2008 May; 109(1):47-54. PMID: 17588203.
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      30. Gajduskova P, Snijders A, Kwek S, Roydasgupta R, Fridlyand J, Tokuyasu T, Pinkel D, Albertson DG. Genome position and gene amplification. Genome Biol. 2007; 8(6):R120. PMID: 17584934; PMCID: PMC2394771.
      31. Trautmann K, Terdiman JP, French AJ, Roydasgupta R, Sein N, Kakar S, Fridlyand J, Snijders A, Albertson DG, Thibodeau SN, Waldman FM. Chromosomal instability in microsatellite-unstable and stable colon cancer. Clin Cancer Res. 2006 Nov 01; 12(21):6379-85. PMID: 17085649.
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      32. Wilting SM, Snijders PJ, Meijer GA, Ylstra B, van den Ijssel PR, Snijders A, Albertson DG, Coffa J, Schouten JP, van de Wiel MA, Meijer CJ, Steenbergen RD. Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix. J Pathol. 2006 Jun; 209(2):220-30. PMID: 16538612.
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      33. Fridlyand J, Snijders A, Ylstra B, Li H, Olshen A, Segraves R, Dairkee S, Tokuyasu T, Ljung BM, Jain AN, McLennan J, Ziegler J, Chin K, Devries S, Feiler H, Gray JW, Waldman F, Pinkel D, Albertson DG. Breast tumor copy number aberration phenotypes and genomic instability. BMC Cancer. 2006 Apr 18; 6:96. PMID: 16620391; PMCID: PMC1459181.
      34. Albertson DG, Snijders A, Fridlyand J, Jordan R, Pinkel D, Schmidt BL. Genomic analysis of tumors by array comparative genomic hybridization: more is better. Cancer Res. 2006 Apr 01; 66(7):3955-6; author reply 3956. PMID: 16585227.
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      35. Nowak NJ, Snijders A, Conroy JM, Albertson DG. The BAC resource: tools for array CGH and FISH. Curr Protoc Hum Genet. 2005 Aug; Chapter 4:Unit 4.13. PMID: 18428377.
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      36. Snijders A, Schmidt BL, Fridlyand J, Dekker N, Pinkel D, Jordan RC, Albertson DG. Rare amplicons implicate frequent deregulation of cell fate specification pathways in oral squamous cell carcinoma. Oncogene. 2005 Jun 16; 24(26):4232-42. PMID: 15824737.
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      37. Hermsen M, Snijders A, Guervós MA, Taenzer S, Koerner U, Baak J, Pinkel D, Albertson D, van Diest P, Meijer G, Schrock E. Centromeric chromosomal translocations show tissue-specific differences between squamous cell carcinomas and adenocarcinomas. Oncogene. 2005 Feb 24; 24(9):1571-9. PMID: 15674345.
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      38. Snijders A, Nowak NJ, Huey B, Fridlyand J, Law S, Conroy J, Tokuyasu T, Demir K, Chiu R, Mao JH, Jain AN, Jones SJ, Balmain A, Pinkel D, Albertson DG. Mapping segmental and sequence variations among laboratory mice using BAC array CGH. Genome Res. 2005 Feb; 15(2):302-11. PMID: 15687294; PMCID: PMC546532.
      39. Zhang X, Snijders A, Segraves R, Zhang X, Niebuhr A, Albertson D, Yang H, Gray J, Niebuhr E, Bolund L, Pinkel D. High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization. Am J Hum Genet. 2005 Feb; 76(2):312-26. PMID: 15635506; PMCID: PMC1196376.
      40. Ishkanian AS, Malloff CA, Watson SK, DeLeeuw RJ, Chi B, Coe BP, Snijders A, Albertson DG, Pinkel D, Marra MA, Ling V, MacAulay C, Lam WL. A tiling resolution DNA microarray with complete coverage of the human genome. Nat Genet. 2004 Mar; 36(3):299-303. PMID: 14981516.
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      41. Snijders A, Segraves R, Blackwood S, Pinkel D, Albertson DG. BAC microarray-based comparative genomic hybridization. Methods Mol Biol. 2004; 256:39-56. PMID: 15024158.
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      42. Weiss MM, Kuipers EJ, Postma C, Snijders A, Pinkel D, Meuwissen SG, Albertson D, Meijer GA. Genomic alterations in primary gastric adenocarcinomas correlate with clinicopathological characteristics and survival. Cell Oncol. 2004; 26(5-6):307-17. PMID: 15623941; PMCID: PMC4611111.
      43. Weiss MM, Kuipers EJ, Postma C, Snijders A, Stolte M, Vieth M, Pinkel D, Meuwissen SG, Albertson D, Meijer GA. Genome wide array comparative genomic hybridisation analysis of premalignant lesions of the stomach. Mol Pathol. 2003 Oct; 56(5):293-8. PMID: 14514924; PMCID: PMC1187341.
      44. Snijders A, Fridlyand J, Mans DA, Segraves R, Jain AN, Pinkel D, Albertson DG. Shaping of tumor and drug-resistant genomes by instability and selection. Oncogene. 2003 Jul 10; 22(28):4370-9. PMID: 12853973.
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      45. Snijders A, Nowee ME, Fridlyand J, Piek JM, Dorsman JC, Jain AN, Pinkel D, van Diest PJ, Verheijen RH, Albertson DG. Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in fallopian tube carcinoma. Oncogene. 2003 Jul 03; 22(27):4281-6. PMID: 12833150.
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      46. Weiss MM, Snijders A, Kuipers EJ, Ylstra B, Pinkel D, Meuwissen SG, van Diest PJ, Albertson DG, Meijer GA. Determination of amplicon boundaries at 20q13.2 in tissue samples of human gastric adenocarcinomas by high-resolution microarray comparative genomic hybridization. J Pathol. 2003 Jul; 200(3):320-6. PMID: 12845628.
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      47. Snijders A, Pinkel D, Albertson DG. Current status and future prospects of array-based comparative genomic hybridisation. Brief Funct Genomic Proteomic. 2003 Apr; 2(1):37-45. PMID: 15239942.
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      48. Weiss MM, Kuipers EJ, Postma C, Snijders A, Siccama I, Pinkel D, Westerga J, Meuwissen SG, Albertson DG, Meijer GA. Genomic profiling of gastric cancer predicts lymph node status and survival. Oncogene. 2003 Mar 27; 22(12):1872-9. PMID: 12660823.
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      49. Jain AN, Tokuyasu TA, Snijders A, Segraves R, Albertson DG, Pinkel D. Fully automatic quantification of microarray image data. Genome Res. 2002 Feb; 12(2):325-32. PMID: 11827952; PMCID: PMC155276.
      50. Snijders A, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG. Assembly of microarrays for genome-wide measurement of DNA copy number. Nat Genet. 2001 Nov; 29(3):263-4. PMID: 11687795.
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      51. Zweemer RP, Ryan A, Snijders A, Hermsen MA, Meijer GA, Beller U, Menko FH, Jacobs IJ, Baak JP, Verheijen RH, Kenemans P, van Diest PJ. Comparative genomic hybridization of microdissected familial ovarian carcinoma: two deleted regions on chromosome 15q not previously identified in sporadic ovarian carcinoma. Lab Invest. 2001 Oct; 81(10):1363-70. PMID: 11598149.
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      52. Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, Thoreen C, Snijders A, Lemyre E, Bailey JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman C, Han CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M, Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ, Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E, Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler G, de Jong PJ, Trask BJ. Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature. 2001 Feb 15; 409(6822):953-8. PMID: 11237021.
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      53. Snijders A, Meijer GA, Brakenhoff RH, van den Brule AJ, van Diest PJ. Microarray techniques in pathology: tool or toy? Mol Pathol. 2000 Dec; 53(6):289-94. PMID: 11193046; PMCID: PMC1186982.
      54. Wassenaar A, Verschoor T, Kievits F, Den Hartog MT, Kapsenberg ML, Everts V, Snijders A. CD40 engagement modulates the production of matrix metalloproteinases by gingival fibroblasts. Clin Exp Immunol. 1999 Jan; 115(1):161-7. PMID: 9933437; PMCID: PMC1905194.
      55. van der Pouw Kraan TC, Snijders A, Boeije LC, de Groot ER, Alewijnse AE, Leurs R, Aarden LA. Histamine inhibits the production of interleukin-12 through interaction with H2 receptors. J Clin Invest. 1998 Nov 15; 102(10):1866-73. PMID: 9819373; PMCID: PMC509137.
      56. Wassenaar A, Reinhardus C, Abraham-Inpijn L, Snijders A, Kievits F. Characteristics of Prevotella intermedia-specific CD4+ T cell clones from peripheral blood of a chronic adult periodontitis patient. Clin Exp Immunol. 1998 Jul; 113(1):105-10. PMID: 9697992; PMCID: PMC1905014.
      57. Snijders A, Van der Pouw Kraan TC, Engel M, Wormmeester J, Widjaja P, Zonneveld IM, Bos JD, Kapsenberg ML. Enhanced prostaglandin E2 production by monocytes in atopic dermatitis (AD) is not accompanied by enhanced production of IL-6, IL-10 or IL-12. Clin Exp Immunol. 1998 Mar; 111(3):472-6. PMID: 9528885; PMCID: PMC1904876.
      58. Wassenaar A, Snijders A, Abraham-Inpijn L, Kapsenberg ML, Kievits F. Antigen-presenting properties of gingival fibroblasts in chronic adult periodontitis. Clin Exp Immunol. 1997 Nov; 110(2):277-84. PMID: 9367413; PMCID: PMC2265508.

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