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Dernburg, Abby

TitleBiologist Senior Faculty SE
InstitutionLawrence Berkeley National Lab
DepartmentBiological Systems & Eng
Address1 Cyclotron Road
Berkeley CA 94720
Phone510/666-3615
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    Collapse Research 
    Collapse Research Activities and Funding
    Chromosomal Control of Segregation of C. Elegans
    NIH/NIGMS R01GM065591Apr 1, 2002 - Nov 30, 2021
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Zhang L, Köhler S, Rillo-Bohn R, Dernburg A. A compartmentalized signaling network mediates crossover control in meiosis. Elife. 2018 Mar 09; 7. PMID: 29521627.
      View in: PubMed
    2. Köhler S, Wojcik M, Xu K, Dernburg A. Superresolution microscopy reveals the three-dimensional organization of meiotic chromosome axes in intact Caenorhabditis elegans tissue. Proc Natl Acad Sci U S A. 2017 06 13; 114(24):E4734-E4743. PMID: 28559338.
      View in: PubMed
    3. Rog O, Köhler S, Dernburg A. The synaptonemal complex has liquid crystalline properties and spatially regulates meiotic recombination factors. Elife. 2017 Jan 03; 6. PMID: 28045371.
      View in: PubMed
    4. Yu Z, Kim Y, Dernburg A. Meiotic recombination and the crossover assurance checkpoint in Caenorhabditis elegans. Semin Cell Dev Biol. 2016 06; 54:106-16. PMID: 27013114.
      View in: PubMed
    5. Zhang L, Ward JD, Cheng Z, Dernburg A. The auxin-inducible degradation (AID) system enables versatile conditional protein depletion in C. elegans. Development. 2015 Dec 15; 142(24):4374-84. PMID: 26552885; PMCID: PMC4689222.
    6. Kim Y, Kostow N, Dernburg A. The Chromosome Axis Mediates Feedback Control of CHK-2 to Ensure Crossover Formation in C. elegans. Dev Cell. 2015 Oct 26; 35(2):247-61. PMID: 26506311; PMCID: PMC4624198 [Available on 10/26/16].
    7. Rog O, Dernburg A. Direct Visualization Reveals Kinetics of Meiotic Chromosome Synapsis. Cell Rep. 2015 Mar 10. PMID: 25772351.
      View in: PubMed
    8. Kim Y, Rosenberg SC, Kugel CL, Kostow N, Rog O, Davydov V, Su TY, Dernburg A, Corbett KD. The chromosome axis controls meiotic events through a hierarchical assembly of HORMA domain proteins. Dev Cell. 2014 Nov 24; 31(4):487-502. PMID: 25446517; PMCID: PMC4254552.
    9. Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg A, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ. Comparative analysis of metazoan chromatin organization. Nature. 2014 Aug 28; 512(7515):449-52. PMID: 25164756.
      View in: PubMed
    10. Stamper EL, Rodenbusch SE, Rosu S, Ahringer J, Villeneuve AM, Dernburg A. Identification of DSB-1, a protein required for initiation of meiotic recombination in Caenorhabditis elegans, illuminates a crossover assurance checkpoint. PLoS Genet. 2013; 9(8):e1003679. PMID: 23990794.
      View in: PubMed
    11. Rosu S, Zawadzki KA, Stamper EL, Libuda DE, Reese AL, Dernburg A, Villeneuve AM. The C. elegans DSB-2 protein reveals a regulatory network that controls competence for meiotic DSB formation and promotes crossover assurance. PLoS Genet. 2013; 9(8):e1003674. PMID: 23950729; PMCID: PMC3738457.
    12. Rog O, Dernburg A. Chromosome pairing and synapsis during Caenorhabditis elegans meiosis. Curr Opin Cell Biol. 2013 Jun; 25(3):349-56. PMID: 23578368; PMCID: PMC3694717.
    13. Dernburg A. Pushing the (nuclear) envelope into meiosis. Genome Biol. 2013 Mar 27; 14(3):110. PMID: 23651872; PMCID: PMC3663112.
    14. Vielle A, Lang J, Dong Y, Ercan S, Kotwaliwale C, Rechtsteiner A, Appert A, Chen QB, Dose A, Egelhofer T, Kimura H, Stempor P, Dernburg A, Lieb JD, Strome S, Ahringer J. H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation. PLoS Genet. 2012 Sep; 8(9):e1002933. PMID: 23028348.
      View in: PubMed
    15. Dernburg A. Molecular biology. RNA plays meiotic matchmaker. Science. 2012 May 11; 336(6082):681-2. PMID: 22582252.
      View in: PubMed
    16. Dernburg A. Hybridization to tissues on slides or coverslips for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2012 May 01; 2012(5). PMID: 22550288.
      View in: PubMed
    17. Dernburg A. Formaldehyde fixation of Drosophila tissues onto slides for whole-mount FISH. Cold Spring Harb Protoc. 2012 May 01; 2012(5). PMID: 22550287.
      View in: PubMed
    18. Dernburg A. DOP-PCR amplification of probe DNA for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2012 Mar 01; 2012(3):380-4. PMID: 22383635.
      View in: PubMed
    19. Dernburg A. Microdissection of Drosophila polytene chromosomes for DOP-PCR. Cold Spring Harb Protoc. 2012 Mar 01; 2012(3):376-9. PMID: 22383634.
      View in: PubMed
    20. Wynne DJ, Rog O, Carlton PM, Dernburg A. Dynein-dependent processive chromosome motions promote homologous pairing in C. elegans meiosis. J Cell Biol. 2012 Jan 09; 196(1):47-64. PMID: 22232701; PMCID: PMC3255982.
    21. Dernburg A. Fragmentation and labeling of probe DNA for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2011 Dec 01; 2011(12):1527-30. PMID: 22135656.
      View in: PubMed
    22. Dernburg A. Hybridization to tissues in suspension for whole-mount FISH in Drosophila. Cold Spring Harb Protoc. 2011 Dec 01; 2011(12):1534-7. PMID: 22135658.
      View in: PubMed
    23. Dernburg A. Manual dissection and fixation of Drosophila egg chambers for whole-mount FISH. Cold Spring Harb Protoc. 2011 Dec 01; 2011(12):1531-3. PMID: 22135657.
      View in: PubMed
    24. Harper NC, Rillo R, Jover-Gil S, Assaf ZJ, Bhalla N, Dernburg A. Pairing centers recruit a Polo-like kinase to orchestrate meiotic chromosome dynamics in C. elegans. Dev Cell. 2011 Nov 15; 21(5):934-47. PMID: 22018922; PMCID: PMC4343031.
    25. Dernburg A. In situ hybridization to somatic chromosomes in Drosophila. Cold Spring Harb Protoc. 2011 Sep 01; 2011(9). PMID: 21880819.
      View in: PubMed
    26. Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg A, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science. 2010 Dec 24; 330(6012):1775-87. PMID: 21177976.
      View in: PubMed
    27. Liu T, Rechtsteiner A, Egelhofer TA, Vielle A, Latorre I, Cheung MS, Ercan S, Ikegami K, Jensen M, Kolasinska-Zwierz P, Rosenbaum H, Shin H, Taing S, Takasaki T, Iniguez AL, Desai A, Dernburg A, Kimura H, Lieb JD, Ahringer J, Strome S, Liu XS. Broad chromosomal domains of histone modification patterns in C. elegans. Genome Res. 2011 Feb; 21(2):227-36. PMID: 21177964.
      View in: PubMed
    28. Sato A, Isaac B, Phillips CM, Rillo R, Carlton PM, Wynne DJ, Kasad RA, Dernburg A. Cytoskeletal forces span the nuclear envelope to coordinate meiotic chromosome pairing and synapsis. Cell. 2009 Nov 25; 139(5):907-19. PMID: 19913287; PMCID: PMC2825574.
    29. Hiraoka Y, Dernburg A. The SUN rises on meiotic chromosome dynamics. Dev Cell. 2009 Nov; 17(5):598-605. PMID: 19922865.
      View in: PubMed
    30. Phillips CM, Meng X, Zhang L, Chretien JH, Urnov FD, Dernburg A. Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans. Nat Cell Biol. 2009 Aug; 11(8):934-42. PMID: 19620970; PMCID: PMC4001799.
    31. Kotwaliwale CV, Dernburg A. Old nuclei spring new leaks. Cell. 2009 Jan 23; 136(2):211-2. PMID: 19167324.
      View in: PubMed
    32. Phillips CM, McDonald KL, Dernburg A. Cytological analysis of meiosis in Caenorhabditis elegans. Methods Mol Biol. 2009; 558:171-95. PMID: 19685325; PMCID: PMC3644504.
    33. Bhalla N, Wynne DJ, Jantsch V, Dernburg A. ZHP-3 acts at crossovers to couple meiotic recombination with synaptonemal complex disassembly and bivalent formation in C. elegans. PLoS Genet. 2008 Oct; 4(10):e1000235. PMID: 18949042; PMCID: PMC2567099.
    34. Martinez-Perez E, Schvarzstein M, Barroso C, Lightfoot J, Dernburg A, Villeneuve AM. Crossovers trigger a remodeling of meiotic chromosome axis composition that is linked to two-step loss of sister chromatid cohesion. Genes Dev. 2008 Oct 15; 22(20):2886-901. PMID: 18923085; PMCID: PMC2569886.
    35. Bhalla N, Dernburg A. Prelude to a division. Annu Rev Cell Dev Biol. 2008; 24:397-424. PMID: 18597662; PMCID: PMC4435778.
    36. Dernburg A, Misteli T. Nuclear architecture--an island no more. Dev Cell. 2007 Mar; 12(3):329-34. PMID: 17336900.
      View in: PubMed
    37. Phillips CM, Dernburg A. A family of zinc-finger proteins is required for chromosome-specific pairing and synapsis during meiosis in C. elegans. Dev Cell. 2006 Dec; 11(6):817-29. PMID: 17141157.
      View in: PubMed
    38. Carlton PM, Farruggio AP, Dernburg A. A link between meiotic prophase progression and crossover control. PLoS Genet. 2006 Feb; 2(2):e12. PMID: 16462941; PMCID: PMC1359072.
    39. Phillips CM, Wong C, Bhalla N, Carlton PM, Weiser P, Meneely PM, Dernburg A. HIM-8 binds to the X chromosome pairing center and mediates chromosome-specific meiotic synapsis. Cell. 2005 Dec 16; 123(6):1051-63. PMID: 16360035; PMCID: PMC4435792.
    40. MacQueen AJ, Phillips CM, Bhalla N, Weiser P, Villeneuve AM, Dernburg A. Chromosome sites play dual roles to establish homologous synapsis during meiosis in C. elegans. Cell. 2005 Dec 16; 123(6):1037-50. PMID: 16360034; PMCID: PMC4435800.
    41. Bhalla N, Dernburg A. A conserved checkpoint monitors meiotic chromosome synapsis in Caenorhabditis elegans. Science. 2005 Dec 09; 310(5754):1683-6. PMID: 16339446.
      View in: PubMed
    42. Dernburg A. Meiosis researchers exchange information in the Alps. Dev Cell. 2003 Nov; 5(5):691-3. PMID: 14602070.
      View in: PubMed
    43. Dernburg A, Karpen GH. A chromosome RNAissance. Cell. 2002 Oct 18; 111(2):159-62. PMID: 12408860.
      View in: PubMed
    44. Kelly WG, Schaner CE, Dernburg A, Lee MH, Kim SK, Villeneuve AM, Reinke V. X-chromosome silencing in the germline of C. elegans. Development. 2002 Jan; 129(2):479-92. PMID: 11807039; PMCID: PMC4066729.
    45. Dernburg A. Here, there, and everywhere: kinetochore function on holocentric chromosomes. J Cell Biol. 2001 Jun 11; 153(6):F33-8. PMID: 11402076; PMCID: PMC2192025.
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