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Aindrila Mukhopadhyay

Senior Scientist, Biological Systems and Engineering Division, Biosciences Area

Biodesign Dept

Orcid identifier0000-0002-6513-7425
  • Senior Scientist, Biological Systems and Engineering Division, Biosciences Area
    Biodesign Dept

BIO

My work is focused on understanding membrane transport, signaling, stress response and tolerance phenotypes in microbial systems. I study both engineered and environmental microbes. I use a variety of microbiological, biochemical and systems biology tools to examine environmentally important organisms such as sulfate and metal reducing bacteria as well as cyanobacteria. I have specific interest in signaling mechanisms in novel non-model organisms like Pseudomonas stuzeri, Desulfovibrio vulgaris and Microcoleus vaginatus and have conducted detailed studies in model organisms such as Agrobacterium tumefaciens. I develop tools, and use host and protein engineering strategies, to improve the production of fuels and chemicals, and conduct bioremediation, using model microbes such as Escherichia coli and Saccharomyces cerevisiae.

LAWRENCE BERKELEY NATIONAL LAB APPOINTMENTS

  • Senior Scientist, Biological Systems and Engineering Division, Biosciences Area
    Lawrence Berkeley National Laboratory, Biosciences, Biological Systems & Engineering, Berkeley, CA, USA1 Nov 2002 - present

ACADEMIC POSITIONS

  • Visiting Professor
    Indian Institute of Technology, Chemical Engineering, Mumbai, India1 Jan 2016 - present
  • Adjunct Professor
    Arizona State University, School of Life Sciences of the College of Liberal Arts and Sciences, Tempe, United States1 Jan 2014 - present
  • GSRA
    University of Chicago, Chemistry, Chicago, United States1 Jan 1996 - 1 Jan 2002
  • GSRA
    Emory Univeristy, Chemistry, Atlanta, United States2000 - 2002
  • Biological Engineer Senior Sci
    Biodesign Dept, Biological Systems & Eng, BioSciences, Berkeley, CA, USA1 Nov 2002 - present

NON-ACADEMIC POSITIONS

  • Career Scientist
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States1 Jan 2004 - 1 Jan 2007
  • Staff Scientist
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States1 Jan 2007 - 1 Jan 2016
  • Biosciences Area Divisional Reorganizational Lead
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Biological Engineering, Berkeley, United States2015 - 2015
  • Interim Division Director
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Biological Systems and Engineering, Berkeley, United States1 Jan 2015 - 1 Jan 2016
  • Senior Scientist
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Biological Systems and Engineering, Berkeley, United States1 Jan 2016 - present

DEGREES

  • B.Sc., Chemistry, Zoology, Botany
    Isabella Thoburn College, Lucknow, India1993
  • M. Sc., Chemistry
    Indian Institute of Technology, Mumbai, India1996
  • M.S., Organic Chemistry
    University of Chicago, Chicago, United States1997
  • Ph.D., Organic Chemistry
    University of Chicago, Chicago, United States2002
  • Post doctoral research, Microbiology/ Systems Biology
    UC Berkeley/ Lawrence Berkeley national laboratory, Berkeley, United States2003
  • Cert., UC Berkeley and Berkeley Lab Leadership Development Program
    UC Berkeley, Berkeley, United States2010

CERTIFICATIONS

  • Technical lead for Proteomics studies for the DOE program: Virtual Institute of Microbial Stress and Survival
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States2004 - 2007
  • Project Co-PI in the DOE Project: Environmental Stress pathway project
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States2007 - 2009
  • Director, Omics Technologies
    Joint BioEnergy Institute (DOE), Emeryville, Emeryville, United States2007 - 2012
  • Director, Fuels Transport & Toxicity
    Joint BioEnergy Institute (DOE), Emeryville, Emeryville, United States2007 - 2012
  • Co-PI, Cyanobacterial Biological Soil Crusts, strategic LDRD project
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States2011 - 2014
  • Co-PI, microClean DARPA seedling G-agent Bioremediation project
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States2013 - 2014
  • PI, Study of novel Acinetobacter venetianus genes for alkane degradation
    Lawrence Berkeley National Laboratory (DOE), Berkeley, Berkeley, United States2014 - 2015
  • Project Co-PI in the DOE SFA: Ecosystems and genomes integrated with genes and molecular assemblies
    ENIGMA2009 - present

AREA

  • Biosciences

DIVISION

  • Biological Systems & Engineering

RESEARCH AREAS