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    22833 Publications
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    Mutalik, Vivek

    TitleBiochemist Research Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentPhysical Biosciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone415/342-7487

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Freed EF, Winkler JD, Weiss SJ, Garst AD, Mutalik VK, Arkin AP, Knight R, Gill RT. Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits. ACS Synth Biol. 2015 Nov 20; 4(11):1244-53.
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      2. Linshiz G, Stawski N, Goyal G, Bi C, Poust S, Sharma M, Mutalik V, Keasling JD, Hillson NJ. PR-PR: Cross-Platform Laboratory Automation System. ACS Synth Biol. 2014 Aug 15; 3(8):515-24.
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      3. Kosuri S, Goodman DB, Cambray G, Mutalik VK, Gao Y, Arkin AP, Endy D, Church GM. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proc Natl Acad Sci U S A. 2013 Aug 20; 110(34):14024-9.
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      4. Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Res. 2013 May; 41(9):5139-48.
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      5. Mutalik VK, Guimaraes JC, Cambray G, Lam C, Christoffersen MJ, Mai QA, Tran AB, Paull M, Keasling JD, Arkin AP, Endy D. Precise and reliable gene expression via standard transcription and translation initiation elements. Nat Methods. 2013 Apr; 10(4):354-60.
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      6. Mutalik VK, Guimaraes JC, Cambray G, Mai QA, Christoffersen MJ, Martin L, Yu A, Lam C, Rodriguez C, Bennett G, Keasling JD, Endy D, Arkin AP. Quantitative estimation of activity and quality for collections of functional genetic elements. Nat Methods. 2013 Apr; 10(4):347-53.
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      7. Goldbeck CP, Jensen HM, TerAvest MA, Beedle N, Appling Y, Hepler M, Cambray G, Mutalik V, Angenent LT, Ajo-Franklin CM. Tuning promoter strengths for improved synthesis and function of electron conduits in Escherichia coli. ACS Synth Biol. 2013 Mar 15; 2(3):150-9.
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      8. Liu CC, Qi L, Lucks JB, Segall-Shapiro TH, Wang D, Mutalik VK, Arkin AP. An adaptor from translational to transcriptional control enables predictable assembly of complex regulation. Nat Methods. 2012 Nov; 9(11):1088-94.
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      9. Mutalik VK, Qi L, Guimaraes JC, Lucks JB, Arkin AP. Rationally designed families of orthogonal RNA regulators of translation. Nat Chem Biol. 2012 May; 8(5):447-54.
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      10. Qi L, Lucks JB, Liu CC, Mutalik VK, Arkin AP. Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals. Nucleic Acids Res. 2012 Jul; 40(12):5775-86.
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      11. Rhodius VA, Mutalik VK, Gross CA. Predicting the strength of UP-elements and full-length E. coli sE promoters. Nucleic Acids Res. 2012 Apr; 40(7):2907-24.
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      12. Cambray G, Mutalik VK, Arkin AP. Toward rational design of bacterial genomes. Curr Opin Microbiol. 2011 Oct; 14(5):624-30.
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      13. Lucks JB, Qi L, Mutalik VK, Wang D, Arkin AP. Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc Natl Acad Sci U S A. 2011 May 24; 108(21):8617-22.
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      14. Rhodius VA, Mutalik VK. Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, sigmaE. Proc Natl Acad Sci U S A. 2010 Feb 16; 107(7):2854-9.
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      15. Mutalik VK, Nonaka G, Ades SE, Rhodius VA, Gross CA. Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica. J Bacteriol. 2009 Dec; 191(23):7279-87.
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      16. Mutalik VK, Venkatesh KV. A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior. Biosystems. 2007 Jul-Aug; 90(1):1-19.
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      17. Grigorova IL, Phleger NJ, Mutalik VK, Gross CA. Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA. Proc Natl Acad Sci U S A. 2006 Apr 4; 103(14):5332-7.
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      18. Mutalik VK, Venkatesh KV. Effect of the MAPK cascade structure, nuclear translocation and regulation of transcription factors on gene expression. Biosystems. 2006 Aug; 85(2):144-57.
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      19. Mutalik VK, Venkatesh KV. Quantification of the glycogen cascade system: the ultrasensitive responses of liver glycogen synthase and muscle phosphorylase are due to distinctive regulatory designs. Theor Biol Med Model. 2005; 2:19.
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      20. Giri L, Mutalik VK, Venkatesh KV. A steady state analysis indicates that negative feedback regulation of PTP1B by Akt elicits bistability in insulin-stimulated GLUT4 translocation. Theor Biol Med Model. 2004; 1:2.
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      21. Mutalik VK, Singh AP, Edwards JS, Venkatesh KV. Robust global sensitivity in multiple enzyme cascade system explains how the downstream cascade structure may remain unaffected by cross-talk. FEBS Lett. 2004 Jan 30; 558(1-3):79-84.
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      22. Mutalik VK, Singh AP, Edwards JS, Venkatesh KV. Equilibrium analysis of allosteric interactions shows zero-order effects. Cell Biochem Biophys. 2004; 41(2):179-92.
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      23. Mutalik VK, Shah P, Venkatesh KV. Allosteric interactions and bifunctionality make the response of glutamine synthetase cascade system of Escherichia coli robust and ultrasensitive. J Biol Chem. 2003 Jul 18; 278(29):26327-32.
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