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    Davis, Thomas

    Title
    SchoolLawrence Berkeley National Lab
    DepartmentNERSC
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-4524
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Weller M, Butowski N, Tran DD, Recht LD, Lim M, Hirte H, Ashby L, Mechtler L, Goldlust SA, Iwamoto F, Drappatz J, O'Rourke DM, Wong M, Hamilton MG, Finocchiaro G, Perry J, Wick W, Green J, He Y, Turner CD, Yellin MJ, Keler T, Davis T, Stupp R, Sampson JH. Rindopepimut with temozolomide for patients with newly diagnosed, EGFRvIII-expressing glioblastoma (ACT IV): a randomised, double-blind, international phase 3 trial. Lancet Oncol. 2017 Aug 22. PMID: 28844499.
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      2. Agarwal S, Loder SJ, Breuler C, Li J, Cholok D, Brownley C, Peterson J, Hsieh HH, Drake J, Ranganathan K, Niknafs YS, Xiao W, Li S, Kumar R, Tompkins R, Longaker MT, Davis T, Yu PB, Mishina Y, Levi B. Strategic Targeting of Multiple BMP Receptors Prevents Trauma-Induced Heterotopic Ossification. Mol Ther. 2017 Aug 02; 25(8):1974-1987. PMID: 28716575.
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      3. Salisbury EA, Dickerson AR, Davis T, Forsberg JA, Davis AR, Olmsted-Davis EA. Characterization of Brown Adipose-Like Tissue in Trauma-Induced Heterotopic Ossification in Humans. Am J Pathol. 2017 Sep; 187(9):2071-2079. PMID: 28686851.
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      4. Olmsted-Davis EA, Salisbury EA, Hoang D, Davis EL, Lazard Z, Sonnet C, Davis T, Forsberg JA, Davis AR. Progenitors in Peripheral Nerves Launch Heterotopic Ossification. Stem Cells Transl Med. 2017 Apr; 6(4):1109-1119. PMID: 28198109.
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      5. Cholok D, Lee E, Lisiecki J, Agarwal S, Loder S, Ranganathan K, Qureshi AT, Davis T, Levi B. Traumatic muscle fibrosis: From pathway to prevention. J Trauma Acute Care Surg. 2017 Jan; 82(1):174-184. PMID: 27787441.
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      6. Agarwal S, Loder SJ, Cholok D, Peterson J, Li J, Breuler C, Cameron Brownley R, Hsin Sung H, Chung MT, Kamiya N, Li S, Zhao B, Kaartinen V, Davis T, Qureshi AT, Schipani E, Mishina Y, Levi B. Scleraxis-Lineage Cells Contribute to Ectopic Bone Formation in Muscle and Tendon. Stem Cells. 2017 Mar; 35(3):705-710. PMID: 27862618.
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      7. Agarwal S, Drake J, Qureshi AT, Loder S, Li S, Shigemori K, Peterson J, Cholok D, Forsberg JA, Mishina Y, Davis T, Levi B. Characterization of Cells Isolated from Genetic and Trauma-Induced Heterotopic Ossification. PLoS One. 2016; 11(8):e0156253. PMID: 27494521; PMCID: PMC4975503.
      8. Pavey GJ, Qureshi AT, Tomasino AM, Honnold CL, Bishop DK, Agarwal S, Loder S, Levi B, Pacifici M, Iwamoto M, Potter BK, Davis T, Forsberg JA. Targeted stimulation of retinoic acid receptor-? mitigates the formation of heterotopic ossification in an established blast-related traumatic injury model. Bone. 2016 Sep; 90:159-67. PMID: 27368930.
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      9. Davis EL, Sonnet C, Lazard ZW, Henslee G, Gugala Z, Salisbury EA, Strecker EV, Davis T, Forsberg JA, Davis AR, Olmsted-Davis EA. Location-dependent heterotopic ossification in the rat model: The role of activated matrix metalloproteinase 9. J Orthop Res. 2016 Nov; 34(11):1894-1904. PMID: 26919547.
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      10. Agarwal S, Loder S, Brownley C, Cholok D, Mangiavini L, Li J, Breuler C, Sung HH, Li S, Ranganathan K, Peterson J, Tompkins R, Herndon D, Xiao W, Jumlongras D, Olsen BR, Davis T, Mishina Y, Schipani E, Levi B. Inhibition of Hif1a prevents both trauma-induced and genetic heterotopic ossification. Proc Natl Acad Sci U S A. 2016 Jan 19; 113(3):E338-47. PMID: 26721400; PMCID: PMC4725488.
      11. Qureshi AT, Crump EK, Pavey GJ, Hope DN, Forsberg JA, Davis T. Early Characterization of Blast-related Heterotopic Ossification in a Rat Model. Clin Orthop Relat Res. 2015 Sep; 473(9):2831-9. PMID: 25754758; PMCID: PMC4523528.
      12. Alfieri KA, Potter BK, Davis T, Wagner MB, Elster EA, Forsberg JA. Preventing Heterotopic Ossification in Combat Casualties-Which Models Are Best Suited for Clinical Use? Clin Orthop Relat Res. 2015 Sep; 473(9):2807-13. PMID: 25917420; PMCID: PMC4523530.
      13. Pavey GJ, Qureshi AT, Hope DN, Pavlicek RL, Potter BK, Forsberg JA, Davis T. Bioburden Increases Heterotopic Ossification Formation in an Established Rat Model. Clin Orthop Relat Res. 2015 Sep; 473(9):2840-7. PMID: 25822455; PMCID: PMC4523512.
      14. Bograd BA, Radowsky JS, Vicente DA, Lee EH, Davis T, Elster EA. An Evolving Uncontrolled Hemorrhage Model Using Cynomolgus Macaques. Shock. 2015 Aug; 44 Suppl 1:123-8. PMID: 25565642.
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      15. Ranganathan K, Loder S, Agarwal S, Wong VW, Wong VC, Forsberg J, Davis T, Wang S, James AW, Levi B. Heterotopic Ossification: Basic-Science Principles and Clinical Correlates. J Bone Joint Surg Am. 2015 Jul 01; 97(13):1101-11. PMID: 26135077.
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      16. Ranganathan K, Peterson J, Agarwal S, Oluwatobi E, Loder S, Forsberg JA, Davis T, Buchman SR, Wang SC, Levi B. Role of gender in burn-induced heterotopic ossification and mesenchymal cell osteogenic differentiation. Plast Reconstr Surg. 2015 Jun; 135(6):1631-41. PMID: 26017598; PMCID: PMC4448122.
      17. Yardley DA, Weaver R, Melisko ME, Saleh MN, Arena FP, Forero A, Cigler T, Stopeck A, Citrin D, Oliff I, Bechhold R, Loutfi R, Garcia AA, Cruickshank S, Crowley E, Green J, Hawthorne T, Yellin MJ, Davis T, Vahdat LT. EMERGE: A Randomized Phase II Study of the Antibody-Drug Conjugate Glembatumumab Vedotin in Advanced Glycoprotein NMB-Expressing Breast Cancer. J Clin Oncol. 2015 May 10; 33(14):1609-19. PMID: 25847941.
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      18. Schuster J, Lai RK, Recht LD, Reardon DA, Paleologos NA, Groves MD, Mrugala MM, Jensen R, Baehring JM, Sloan A, Archer GE, Bigner DD, Cruickshank S, Green JA, Keler T, Davis T, Heimberger AB, Sampson JH. A phase II, multicenter trial of rindopepimut (CDX-110) in newly diagnosed glioblastoma: the ACT III study. Neuro Oncol. 2015 Jun; 17(6):854-61. PMID: 25586468; PMCID: PMC4483122.
      19. Davis T, Anam K, Lazdun Y, Gimble JM, Elster EA. Adipose-derived stromal cells promote allograft tolerance induction. Stem Cells Transl Med. 2014 Dec; 3(12):1444-50. PMID: 25411475; PMCID: PMC4250215.
      20. Valparaiso AP, Vicente DA, Bograd BA, Elster EA, Davis T. Modeling acute traumatic injury. J Surg Res. 2015 Mar; 194(1):220-32. PMID: 25481528.
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      21. Ott PA, Hamid O, Pavlick AC, Kluger H, Kim KB, Boasberg PD, Simantov R, Crowley E, Green JA, Hawthorne T, Davis T, Sznol M, Hwu P. Phase I/II study of the antibody-drug conjugate glembatumumab vedotin in patients with advanced melanoma. J Clin Oncol. 2014 Nov 10; 32(32):3659-66. PMID: 25267741; PMCID: PMC4879709.
      22. Forsberg JA, Davis T, Elster EA, Gimble JM. Burned to the bone. Sci Transl Med. 2014 Sep 24; 6(255):255fs37. PMID: 25253672.
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      23. Evans KN, Potter BK, Brown TS, Davis T, Elster EA, Forsberg JA. Osteogenic gene expression correlates with development of heterotopic ossification in war wounds. Clin Orthop Relat Res. 2014 Feb; 472(2):396-404. PMID: 24136804; PMCID: PMC3890153.
      24. Anam K, Davis T. Comparative analysis of gene transcripts for cell signaling receptors in bone marrow-derived hematopoietic stem/progenitor cell and mesenchymal stromal cell populations. Stem Cell Res Ther. 2013 Sep 16; 4(5):112. PMID: 24405801; PMCID: PMC3854681.
      25. Bruneau A, Fortier M, Gagne F, Gagnon C, Turcotte P, Tayabali A, Davis T, Auffret M, Fournier M. In vitro immunotoxicology of quantum dots and comparison with dissolved cadmium and tellurium. Environ Toxicol. 2015 Jan; 30(1):9-25. PMID: 23893621.
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      26. Davis T, Lazdun Y, Potter BK, Forsberg JA. Ectopic bone formation in severely combat-injured orthopedic patients -- a hematopoietic niche. Bone. 2013 Sep; 56(1):119-26. PMID: 23727270.
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      27. Hawksworth JS, Graybill C, Brown TS, Gillern SM, Wallace SM, Davis T, Elster EA, Tadaki DK. Lymphocyte depletion in experimental hemorrhagic shock in Swine. J Inflamm (Lond). 2012 Sep 25; 9(1):34. PMID: 23009382; PMCID: PMC3551698.
      28. Hawksworth JS, Graybill JC, Brown TS, Wallace SM, Davis T, Tadaki DK, Elster EA. Lymphocyte modulation with FTY720 improves hemorrhagic shock survival in swine. PLoS One. 2012; 7(4):e34224. PMID: 22558085; PMCID: PMC3340389.
      29. Golmohamadi M, Davis T, Wilkinson KJ. Diffusion and partitioning of cations in an agarose hydrogel. J Phys Chem A. 2012 Jun 28; 116(25):6505-10. PMID: 22394244.
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      30. Simon DF, Davis T, Tercier-Waeber ML, England R, Wilkinson KJ. In situ evaluation of cadmium biomarkers in green algae. Environ Pollut. 2011 Oct; 159(10):2630-6. PMID: 21696872.
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      31. Davis T, O'Brien FP, Anam K, Grijalva S, Potter BK, Elster EA. Heterotopic ossification in complex orthopaedic combat wounds: quantification and characterization of osteogenic precursor cell activity in traumatized muscle. J Bone Joint Surg Am. 2011 Jun 15; 93(12):1122-31. PMID: 21776549.
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      32. Hwang PF, Porterfield N, Pannell D, Davis T, Elster EA. Trauma is danger. J Transl Med. 2011 Jun 15; 9:92. PMID: 21676213; PMCID: PMC3131254.
      33. Morse MA, Bradley DA, Keler T, Laliberte RJ, Green JA, Davis T, Inman BA. CDX-1307: a novel vaccine under study as treatment for muscle-invasive bladder cancer. Expert Rev Vaccines. 2011 Jun; 10(6):733-42. PMID: 21692696.
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      34. Barshishat-Kupper M, Mungunsukh O, Tipton AJ, McCart EA, Panganiban RA, Davis T, Landauer MR, Day RM. Captopril modulates hypoxia-inducible factors and erythropoietin responses in a murine model of total body irradiation. Exp Hematol. 2011 Mar; 39(3):293-304. PMID: 21146580.
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      35. Potter BK, Forsberg JA, Davis T, Evans KN, Hawksworth JS, Tadaki D, Brown TS, Crane NJ, Burns TC, O'Brien FP, Elster EA. Heterotopic ossification following combat-related trauma. J Bone Joint Surg Am. 2010 Dec; 92 Suppl 2:74-89. PMID: 21123594.
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      36. Anam K, Amare MF, Zins SR, Davis T. Infusion of Lin- bone marrow cells results in multilineage macrochimerism and skin allograft tolerance in minimally conditioned recipient mice. Transpl Immunol. 2010 Oct; 24(1):69-75. PMID: 20950686.
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      37. Sheppard FR, Keiser P, Craft DW, Gage F, Robson M, Brown TS, Petersen K, Sincock S, Kasper M, Hawksworth J, Tadaki D, Davis T, Stojadinovic A, Elster E. The majority of US combat casualty soft-tissue wounds are not infected or colonized upon arrival or during treatment at a continental US military medical facility. Am J Surg. 2010 Oct; 200(4):489-95. PMID: 20887842.
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      38. Zins SR, Amare MF, Tadaki DK, Elster EA, Davis T. Comparative analysis of angiogenic gene expression in normal and impaired wound healing in diabetic mice: effects of extracorporeal shock wave therapy. Angiogenesis. 2010 Dec; 13(4):293-304. PMID: 20848181.
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      39. Stojadinovic A, Eberhardt J, Brown TS, Hawksworth JS, Gage F, Tadaki DK, Forsberg JA, Davis T, Potter BK, Dunne JR, Elster EA. Development of a Bayesian model to estimate health care outcomes in the severely wounded. J Multidiscip Healthc. 2010 Aug 16; 3:125-35. PMID: 21197361; PMCID: PMC3004592.
      40. Stojadinovic A, Elster E, Potter BK, Davis T, Tadaki DK, Brown TS, Ahlers S, Attinger CE, Andersen RC, Burris D, Centeno J, Champion H, Crumbley DR, Denobile J, Duga M, Dunne JR, Eberhardt J, Ennis WJ, Forsberg JA, Hawksworth J, Helling TS, Lazarus GS, Milner SM, Mullick FG, Owner CR, Pasquina PF, Patel CR, Peoples GE, Nissan A, Ring M, Sandberg GD, Schaden W, Schultz GS, Scofield T, Shawen SB, Sheppard FR, Stannard JP, Weina PJ, Zenilman JM. Combat Wound Initiative program. Mil Med. 2010 Jul; 175(7 Suppl):18-24. PMID: 23634474.
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      41. Zins SR, Amare MF, Anam K, Elster EA, Davis T. Wound trauma mediated inflammatory signaling attenuates a tissue regenerative response in MRL/MpJ mice. J Inflamm (Lond). 2010 May 25; 7:25. PMID: 20500883; PMCID: PMC2889944.
      42. Davis T, Landauer MR, Mog SR, Barshishat-Kupper M, Zins SR, Amare MF, Day RM. Timing of captopril administration determines radiation protection or radiation sensitization in a murine model of total body irradiation. Exp Hematol. 2010 Apr; 38(4):270-81. PMID: 20116413; PMCID: PMC2843794.
      43. Hawksworth JS, Stojadinovic A, Gage FA, Tadaki DK, Perdue PW, Forsberg J, Davis T, Dunne JR, Denobile JW, Brown TS, Elster EA. Inflammatory biomarkers in combat wound healing. Ann Surg. 2009 Dec; 250(6):1002-7. PMID: 19953718.
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      44. Davis T, Simon DF, Hassler CS, Wilkinson KJ. A novel in situ tool for the exposure and analysis of microorganisms in natural aquatic systems. Environ Sci Technol. 2009 Nov 01; 43(21):8240-4. PMID: 19924950.
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      45. Kalis EJ, Davis T, Town RM, Van Leeuwen HP. Impact of ionic strength on Cd(II) partitioning between alginate gel and aqueous media. Environ Sci Technol. 2009 Feb 15; 43(4):1091-6. PMID: 19320163.
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      46. Davis T, Stojadinovic A, Anam K, Amare M, Naik S, Peoples GE, Tadaki D, Elster EA. Extracorporeal shock wave therapy suppresses the early proinflammatory immune response to a severe cutaneous burn injury. Int Wound J. 2009 Feb; 6(1):11-21. PMID: 19291111.
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      47. Stojadinovic A, Elster EA, Anam K, Tadaki D, Amare M, Zins S, Davis T. Angiogenic response to extracorporeal shock wave treatment in murine skin isografts. Angiogenesis. 2008; 11(4):369-80. PMID: 18998221.
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      48. Davis T, Kalis EJ, Pinheiro JP, Town RM, van Leeuwen HP. Cd(II) speciation in alginate gels. Environ Sci Technol. 2008 Oct 01; 42(19):7242-7. PMID: 18939553.
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      49. Stojadinovic A, Carlson JW, Schultz GS, Davis T, Elster EA. Topical advances in wound care. Gynecol Oncol. 2008 Nov; 111(2 Suppl):S70-80. PMID: 18793796.
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      50. Davis T, Mungunsukh O, Zins S, Day RM, Landauer MR. Genistein induces radioprotection by hematopoietic stem cell quiescence. Int J Radiat Biol. 2008 Sep; 84(9):713-26. PMID: 18821385.
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      51. Day RM, Barshishat-Kupper M, Mog SR, McCart EA, Prasanna PG, Davis T, Landauer MR. Genistein protects against biomarkers of delayed lung sequelae in mice surviving high-dose total body irradiation. J Radiat Res. 2008 Jul; 49(4):361-72. PMID: 18434686; PMCID: PMC2575019.
      52. Davis T, Pinheiro JP, Grasdalen H, Smidsrød O, van Leeuwen HP. Stability of lead(II) complexes of alginate oligomers. Environ Sci Technol. 2008 Mar 01; 42(5):1673-9. PMID: 18441819.
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      53. MacGill RS, Davis T, Macko J, Mauceri HJ, Weichselbaum RR, King CR. Local gene delivery of tumor necrosis factor alpha can impact primary tumor growth and metastases through a host-mediated response. Clin Exp Metastasis. 2007; 24(7):521-31. PMID: 17653822.
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      54. Davis T, Amare M, Naik S, Kovalchuk AL, Tadaki D. Differential cutaneous wound healing in thermally injured MRL/MPJ mice. Wound Repair Regen. 2007 Jul-Aug; 15(4):577-88. PMID: 17650103.
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      55. Davis T, Clarke TK, Mog SR, Landauer MR. Subcutaneous administration of genistein prior to lethal irradiation supports multilineage, hematopoietic progenitor cell recovery and survival. Int J Radiat Biol. 2007 Mar; 83(3):141-51. PMID: 17378522.
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      56. O'Mahony D, Morris JC, Quinn C, Gao W, Wilson WH, Gause B, Pittaluga S, Neelapu S, Brown M, Fleisher TA, Gulley JL, Schlom J, Nussenblatt R, Albert P, Davis T, Lowy I, Petrus M, Waldmann TA, Janik JE. A pilot study of CTLA-4 blockade after cancer vaccine failure in patients with advanced malignancy. Clin Cancer Res. 2007 Feb 01; 13(3):958-64. PMID: 17289891.
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      57. Cronin DP, Harlan LC, Clegg LX, Stevens JL, Yuan G, Davis T. Patterns of care in a population-based random sample of patients diagnosed with non-Hodgkin's lymphoma. Hematol Oncol. 2005 Jun; 23(2):73-81. PMID: 16170828.
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      58. Davis T, Longcor JD, Hicok KC, Lennon GG. Prior injury accelerates subsequent wound closure in a mouse model of regeneration. Cell Tissue Res. 2005 Jun; 320(3):417-26. PMID: 15856306.
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      59. Davis T, Lennon G. Mice with a regenerative wound healing capacity and an SLE autoimmune phenotype contain elevated numbers of circulating and marrow-derived macrophage progenitor cells. Blood Cells Mol Dis. 2005 Jan-Feb; 34(1):17-25. PMID: 15607695.
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      60. Davis T, Kaminski MS, Leonard JP, Hsu FJ, Wilkinson M, Zelenetz A, Wahl RL, Kroll S, Coleman M, Goris M, Levy R, Knox SJ. The radioisotope contributes significantly to the activity of radioimmunotherapy. Clin Cancer Res. 2004 Dec 01; 10(23):7792-8. PMID: 15585610.
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      61. Koopal LK, Goloub TP, Davis T. Binding of ionic surfactants to purified humic acid. J Colloid Interface Sci. 2004 Jul 15; 275(2):360-7. PMID: 15178260.
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      62. Davis T, Volesky B, Mucci A. A review of the biochemistry of heavy metal biosorption by brown algae. Water Res. 2003 Nov; 37(18):4311-30. PMID: 14511701.
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      63. Davis T, Llanes F, Volesky B, Diaz-Pulido G, McCook L, Mucci A. 1H-NMR study of Na alginates extracted from Sargassum spp. in relation to metal biosorption. Appl Biochem Biotechnol. 2003 Aug; 110(2):75-90. PMID: 14515023.
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      64. Phan GQ, Yang JC, Sherry RM, Hwu P, Topalian SL, Schwartzentruber DJ, Restifo NP, Haworth LR, Seipp CA, Freezer LJ, Morton KE, Mavroukakis SA, Duray PH, Steinberg SM, Allison JP, Davis T, Rosenberg SA. Cancer regression and autoimmunity induced by cytotoxic T lymphocyte-associated antigen 4 blockade in patients with metastatic melanoma. Proc Natl Acad Sci U S A. 2003 Jul 08; 100(14):8372-7. PMID: 12826605; PMCID: PMC166236.
      65. Davis T, Llanes F, Volesky B, Mucci A. Metal selectivity of Sargassum spp. and their alginates in relation to their alpha-L-guluronic acid content and conformation. Environ Sci Technol. 2003 Jan 15; 37(2):261-7. PMID: 12564896.
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      66. Jazayeri A, Davis T, Contreras DN. Diagnosis and management of abdominal pregnancy. A case report. J Reprod Med. 2002 Dec; 47(12):1047-9. PMID: 12516328.
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      67. Chute JP, Saini AA, Chute DJ, Wells MR, Clark WB, Harlan DM, Park J, Stull MK, Civin C, Davis T. Ex vivo culture with human brain endothelial cells increases the SCID-repopulating capacity of adult human bone marrow. Blood. 2002 Dec 15; 100(13):4433-9. PMID: 12393435.
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      68. Diamond LE, Byrne GW, Schwarz A, Davis T, Adams DH, Logan JS. Analysis of the control of the anti-gal immune response in a non-human primate by galactose alpha1-3 galactose trisaccharide-polyethylene glycol conjugate. Transplantation. 2002 Jun 15; 73(11):1780-7. PMID: 12085001.
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      69. Timmerman JM, Czerwinski DK, Davis T, Hsu FJ, Benike C, Hao ZM, Taidi B, Rajapaksa R, Caspar CB, Okada CY, van Beckhoven A, Liles TM, Engleman EG, Levy R. Idiotype-pulsed dendritic cell vaccination for B-cell lymphoma: clinical and immune responses in 35 patients. Blood. 2002 Mar 01; 99(5):1517-26. PMID: 11861263.
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      70. Davis T. Overview: immunotherapy for cancer--is it time for the kitchen sink? Curr Opin Investig Drugs. 2002 Jan; 3(1):130-1. PMID: 12054063.
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