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    Fakra, Sirine

    TitlePr Scientific Engr Assoc
    SchoolLawrence Berkeley National Lab
    DepartmentAdvanced Light Source
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/495-2855
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Keren R, Mayzel B, Lavy A, Polishchuk I, Levy D, Fakra S, Pokroy B, Ilan M. Sponge-associated bacteria mineralize arsenic and barium on intracellular vesicles. Nat Commun. 2017 Feb 24; 8:14393. PMID: 28233852.
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      2. Fakra S, Luef B, Castelle CJ, Mullin SW, Williams KH, Marcus MA, Schichnes D, Banfield JF. Correlative cryogenic spectro-microscopy to investigate Selenium bioreduction products. Environ Sci Technol. 2015 Sep 29. PMID: 26371540.
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      3. Chi T, Kim MS, Lang S, Bose N, Kahn A, Flechner L, Blaschko SD, Zee T, Muteliefu G, Bond N, Kolipinski M, Fakra S, Mandel N, Miller J, Ramanathan A, Killilea DW, Brückner K, Kapahi P, Stoller ML. A Drosophila model identifies a critical role for zinc in mineralization for kidney stone disease. PLoS One. 2015; 10(5):e0124150. PMID: 25970330; PMCID: PMC4430225.
      4. El Mehdawi AF, Lindblom SD, Cappa JJ, Fakra S, Pilon-Smits EA. Do selenium hyperaccumulators affect selenium speciation in neighboring plants and soil? An X-Ray Microprobe Analysis. Int J Phytoremediation. 2015; 17(8):753-65. PMID: 26030363.
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      5. Alford ÉR, Lindblom SD, Pittarello M, Freeman JL, Fakra S, Marcus MA, Broeckling C, Pilon-Smits EA, Paschke MW. Roles of rhizobial symbionts in selenium hyperaccumulation in Astragalus (Fabaceae). Am J Bot. 2014 Nov; 101(11):1895-905. PMID: 25366855.
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      6. Cappa JJ, Yetter C, Fakra S, Cappa PJ, DeTar R, Landes C, Pilon-Smits EA, Simmons MP. Evolution of selenium hyperaccumulation in Stanleya (Brassicaceae) as inferred from phylogeny, physiology and X-ray microprobe analysis. New Phytol. 2015 Jan; 205(2):583-95. PMID: 25262627.
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      7. El Mehdawi AF, Reynolds RJ, Prins CN, Lindblom SD, Cappa JJ, Fakra S, Pilon-Smits EA. Analysis of selenium accumulation, speciation and tolerance of potential selenium hyperaccumulator Symphyotrichum ericoides. Physiol Plant. 2014 Sep; 152(1):70-83. PMID: 24423113.
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      8. Kakoulli I, Prikhodko SV, Fischer C, Cilluffo M, Uribe M, Bechtel HA, Fakra S, Marcus MA. Distribution and chemical speciation of arsenic in ancient human hair using synchrotron radiation. Anal Chem. 2014 Jan 07; 86(1):521-6. PMID: 24320096.
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      9. Schweitzer MH, Zheng W, Cleland TP, Goodwin MB, Boatman E, Theil E, Marcus MA, Fakra S. A role for iron and oxygen chemistry in preserving soft tissues, cells and molecules from deep time. Proc Biol Sci. 2014 Jan 22; 281(1775):20132741. PMID: 24285202; PMCID: PMC3866414.
      10. Manceau A, Simionovici A, Lanson M, Perrin J, Tucoulou R, Bohic S, Fakra S, Marcus MA, Bedell JP, Nagy KL. Thlaspi arvense binds Cu(II) as a bis-(L-histidinato) complex on root cell walls in an urban ecosystem. Metallomics. 2013 Dec; 5(12):1674-84. PMID: 24185827.
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      11. Lindblom SD, Fakra S, Landon J, Schulz P, Tracy B, Pilon-Smits EA. Inoculation of selenium hyperaccumulator Stanleya pinnata and related non-accumulator Stanleya elata with hyperaccumulator rhizosphere fungi--investigation of effects on Se accumulation and speciation. Physiol Plant. 2014 Jan; 150(1):107-18. PMID: 24032473.
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      12. Schmidt R, Tantoyotai P, Fakra S, Marcus MA, Yang SI, Pickering IJ, Bañuelos GS, Hristova KR, Freeman JL. Selenium biotransformations in an engineered aquatic ecosystem for bioremediation of agricultural wastewater via brine shrimp production. Environ Sci Technol. 2013 May 21; 47(10):5057-65. PMID: 23621086.
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      13. Gross E, Liu JH, Alayoglu S, Marcus MA, Fakra S, Toste FD, Somorjai GA. Asymmetric catalysis at the mesoscale: gold nanoclusters embedded in chiral self-assembled monolayer as heterogeneous catalyst for asymmetric reactions. J Am Chem Soc. 2013 Mar 13; 135(10):3881-6. PMID: 23406377.
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      14. Blaschko SD, Chi T, Miller J, Flechner L, Fakra S, Kapahi P, Kahn A, Stoller ML. Strontium substitution for calcium in lithogenesis. J Urol. 2013 Feb; 189(2):735-9. PMID: 23260568; PMCID: PMC4124908.
      15. Freeman JL, Marcus MA, Fakra S, Devonshire J, McGrath SP, Quinn CF, Pilon-Smits EA. Selenium hyperaccumulator plants Stanleya pinnata and Astragalus bisulcatus are colonized by Se-resistant, Se-excluding wasp and beetle seed herbivores. PLoS One. 2012; 7(12):e50516. PMID: 23226523; PMCID: PMC3513300.
      16. Alford ER, Pilon-Smits EA, Fakra S, Paschke MW. Selenium hyperaccumulation by Astragalus (Fabaceae) does not inhibit root nodule symbiosis. Am J Bot. 2012 Dec; 99(12):1930-41. PMID: 23204487.
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      17. Lindblom SD, Fakra S, Landon J, Schulz P, Tracy B, Pilon-Smits EA. Inoculation of Astragalus racemosus and Astragalus convallarius with selenium-hyperaccumulator rhizosphere fungi affects growth and selenium accumulation. Planta. 2013 Mar; 237(3):717-29. PMID: 23117393.
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      18. Luef B, Fakra S, Csencsits R, Wrighton KC, Williams KH, Wilkins MJ, Downing KH, Long PE, Comolli LR, Banfield JF. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth. ISME J. 2013 Feb; 7(2):338-50. PMID: 23038172; PMCID: PMC3554402.
      19. Blaschko SD, Miller J, Chi T, Flechner L, Fakra S, Kahn A, Kapahi P, Stoller ML. Microcomposition of human urinary calculi using advanced imaging techniques. J Urol. 2013 Feb; 189(2):726-34. PMID: 23021997; PMCID: PMC4124914.
      20. Bañuelos GS, Walse SS, Yang SI, Pickering IJ, Fakra S, Marcus MA, Freeman JL. Quantification, localization, and speciation of selenium in seeds of canola and two mustard species compared to seed-meals produced by hydraulic press. Anal Chem. 2012 Jul 17; 84(14):6024-30. PMID: 22747111.
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      21. Gilbert B, Fakra S, Xia T, Pokhrel S, Mädler L, Nel AE. The fate of ZnO nanoparticles administered to human bronchial epithelial cells. ACS Nano. 2012 Jun 26; 6(6):4921-30. PMID: 22646753; PMCID: PMC4120753.
      22. Valdez Barillas JR, Quinn CF, Freeman JL, Lindblom SD, Fakra S, Marcus MA, Gilligan TM, Alford ÉR, Wangeline AL, Pilon-Smits EA. Selenium distribution and speciation in the hyperaccumulator Astragalus bisulcatus and associated ecological partners. Plant Physiol. 2012 Aug; 159(4):1834-44. PMID: 22645068; PMCID: PMC3425216.
      23. Mehdawi AF, Cappa JJ, Fakra S, Self J, Pilon-Smits EA. Interactions of selenium hyperaccumulators and nonaccumulators during cocultivation on seleniferous or nonseleniferous soil--the importance of having good neighbors. New Phytol. 2012 Apr; 194(1):264-77. PMID: 22269105.
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      24. Shafer MM, Toner BM, Overdier JT, Schauer JJ, Fakra S, Hu S, Herner JD, Ayala A. Chemical speciation of vanadium in particulate matter emitted from diesel vehicles and urban atmospheric aerosols. Environ Sci Technol. 2012 Jan 03; 46(1):189-95. PMID: 22050708.
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      25. Li Y, Liu JH, Witham CA, Huang W, Marcus MA, Fakra S, Alayoglu P, Zhu Z, Thompson CM, Arjun A, Lee K, Gross E, Toste FD, Somorjai GA. A Pt-cluster-based heterogeneous catalyst for homogeneous catalytic reactions: X-ray absorption spectroscopy and reaction kinetic studies of their activity and stability against leaching. J Am Chem Soc. 2011 Aug 31; 133(34):13527-33. PMID: 21721543.
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      26. Quinn CF, Prins CN, Freeman JL, Gross AM, Hantzis LJ, Reynolds RJ, Yang Si, Covey PA, Bañuelos GS, Pickering IJ, Fakra S, Marcus MA, Arathi HS, Pilon-Smits EA. Selenium accumulation in flowers and its effects on pollination. New Phytol. 2011 Nov; 192(3):727-37. PMID: 21793829.
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      27. Pauzauskie PJ, Crowhurst JC, Worsley MA, Laurence TA, Kilcoyne AL, Wang Y, Willey TM, Visbeck KS, Fakra S, Evans WJ, Zaug JM, Satcher JH. Synthesis and characterization of a nanocrystalline diamond aerogel. Proc Natl Acad Sci U S A. 2011 May 24; 108(21):8550-3. PMID: 21555550; PMCID: PMC3102373.
      28. Chan CS, Fakra S, Emerson D, Fleming EJ, Edwards KJ. Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation. ISME J. 2011 Apr; 5(4):717-27. PMID: 21107443; PMCID: PMC3105749.
      29. Bañuelos GS, Fakra S, Walse SS, Marcus MA, Yang SI, Pickering IJ, Pilon-Smits EA, Freeman JL. Selenium accumulation, distribution, and speciation in spineless prickly pear cactus: a drought- and salt-tolerant, selenium-enriched nutraceutical fruit crop for biofortified foods. Plant Physiol. 2011 Jan; 155(1):315-27. PMID: 21059825; PMCID: PMC3075757.
      30. Hudelson S, Newman BK, Bernardis S, Fenning DP, Bertoni MI, Marcus MA, Fakra S, Lai B, Buonassisi T. Retrograde melting and internal liquid gettering in silicon. Adv Mater. 2010 Sep 15; 22(35):3948-53. PMID: 20672312.
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      31. Quinn CF, Freeman JL, Reynolds RJ, Cappa JJ, Fakra S, Marcus MA, Lindblom SD, Quinn EK, Bennett LE, Pilon-Smits EA. Selenium hyperaccumulation offers protection from cell disruptor herbivores. BMC Ecol. 2010 Aug 27; 10:19. PMID: 20799959; PMCID: PMC2940900.
      32. Freeman JL, Tamaoki M, Stushnoff C, Quinn CF, Cappa JJ, Devonshire J, Fakra S, Marcus MA, McGrath SP, Van Hoewyk D, Pilon-Smits EA. Molecular mechanisms of selenium tolerance and hyperaccumulation in Stanleya pinnata. Plant Physiol. 2010 Aug; 153(4):1630-52. PMID: 20498337; PMCID: PMC2923907.
      33. Yuhas BD, Habas SE, Fakra S, Mokari T. Probing compositional variation within hybrid nanostructures. ACS Nano. 2009 Nov 24; 3(11):3369-76. PMID: 19813744.
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      34. Sarret G, Willems G, Isaure MP, Marcus MA, Fakra S, Frérot H, Pairis S, Geoffroy N, Manceau A, Saumitou-Laprade P. Zinc distribution and speciation in Arabidopsis halleri x Arabidopsis lyrata progenies presenting various zinc accumulation capacities. New Phytol. 2009 Nov; 184(3):581-95. PMID: 19761446.
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      35. Tschauner O, Asimow PD, Kostandova N, Ahrens TJ, Ma C, Sinogeikin S, Liu Z, Fakra S, Tamura N. Ultrafast growth of wadsleyite in shock-produced melts and its implications for early solar system impact processes. Proc Natl Acad Sci U S A. 2009 Aug 18; 106(33):13691-5. PMID: 19667178; PMCID: PMC2728955.
      36. Chrysochoou M, Fakra S, Marcus MA, Moon DH, Dermatas D. Microstructural analyses of Cr(VI) speciation in chromite ore processing residue (COPR). Environ Sci Technol. 2009 Jul 15; 43(14):5461-6. PMID: 19708382.
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      37. Kunz M, Tamura N, Chen K, MacDowell AA, Celestre RS, Church MM, Fakra S, Domning EE, Glossinger JM, Kirschman JL, Morrison GY, Plate DW, Smith BV, Warwick T, Yashchuk VV, Padmore HA, Ustundag E. A dedicated superbend x-ray microdiffraction beamline for materials, geo-, and environmental sciences at the advanced light source. Rev Sci Instrum. 2009 Mar; 80(3):035108. PMID: 19334953.
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      38. Oram LL, Strawn DG, Marcus MA, Fakra S, Möller G. Macro- and microscale investigation of selenium speciation in Blackfoot river, Idaho sediments. Environ Sci Technol. 2008 Sep 15; 42(18):6830-6. PMID: 18853796.
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      39. Marcus MA, Westphal AJ, Fakra S. Classification of Fe-bearing species from K-edge XANES data using two-parameter correlation plots. J Synchrotron Radiat. 2008 Sep; 15(Pt 5):463-8. PMID: 18728317.
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      40. Courtin-Nomade A, Soubrand-Colin M, Marcus MA, Fakra S. Evidence for the incorporation of lead into barite from waste rock pile materials. Environ Sci Technol. 2008 Apr 15; 42(8):2867-72. PMID: 18497136.
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      41. Chan EM, Marcus MA, Fakra S, ElNaggar M, Mathies RA, Alivisatos AP. Millisecond kinetics of nanocrystal cation exchange using microfluidic X-ray absorption spectroscopy. J Phys Chem A. 2007 Dec 13; 111(49):12210-5. PMID: 17887656.
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      42. Yuhas BD, Fakra S, Marcus MA, Yang P. Probing the local coordination environment for transition metal dopants in zinc oxide nanowires. Nano Lett. 2007 Apr; 7(4):905-9. PMID: 17335268.
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      43. Freeman JL, Lindblom SD, Quinn CF, Fakra S, Marcus MA, Pilon-Smits EA. Selenium accumulation protects plants from herbivory by Orthoptera via toxicity and deterrence. New Phytol. 2007; 175(3):490-500. PMID: 17635224.
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      44. Brownlee D, Tsou P, Aléon J, Alexander CM, Araki T, Bajt S, Baratta GA, Bastien R, Bland P, Bleuet P, Borg J, Bradley JP, Brearley A, Brenker F, Brennan S, Bridges JC, Browning ND, Brucato JR, Bullock E, Burchell MJ, Busemann H, Butterworth A, Chaussidon M, Cheuvront A, Chi M, Cintala MJ, Clark BC, Clemett SJ, Cody G, Colangeli L, Cooper G, Cordier P, Daghlian C, Dai Z, D'Hendecourt L, Djouadi Z, Dominguez G, Duxbury T, Dworkin JP, Ebel DS, Economou TE, Fakra S, Fairey SA, Fallon S, Ferrini G, Ferroir T, Fleckenstein H, Floss C, Flynn G, Franchi IA, Fries M, Gainsforth Z, Gallien JP, Genge M, Gilles MK, Gillet P, Gilmour J, Glavin DP, Gounelle M, Grady MM, Graham GA, Grant PG, Green SF, Grossemy F, Grossman L, Grossman JN, Guan Y, Hagiya K, Harvey R, Heck P, Herzog GF, Hoppe P, Hörz F, Huth J, Hutcheon ID, Ignatyev K, Ishii H, Ito M, Jacob D, Jacobsen C, Jacobsen S, Jones S, Joswiak D, Jurewicz A, Kearsley AT, Keller LP, Khodja H, Kilcoyne AL, Kissel J, Krot A, Langenhorst F, Lanzirotti A, Le L, Leshin LA, Leitner J, Lemelle L, Leroux H, Liu MC, Luening K, Lyon I, Macpherson G, Marcus MA, Marhas K, Marty B, Matrajt G, McKeegan K, Meibom A, Mennella V, Messenger K, Messenger S, Mikouchi T, Mostefaoui S, Nakamura T, Nakano T, Newville M, Nittler LR, Ohnishi I, Ohsumi K, Okudaira K, Papanastassiou DA, Palma R, Palumbo ME, Pepin RO, Perkins D, Perronnet M, Pianetta P, Rao W, Rietmeijer FJ, Robert F, Rost D, Rotundi A, Ryan R, Sandford SA, Schwandt CS, See TH, Schlutter D, Sheffield-Parker J, Simionovici A, Simon S, Sitnitsky I, Snead CJ, Spencer MK, Stadermann FJ, Steele A, Stephan T, Stroud R, Susini J, Sutton SR, Suzuki Y, Taheri M, Taylor S, Teslich N, Tomeoka K, Tomioka N, Toppani A, Trigo-Rodríguez JM, Troadec D, Tsuchiyama A, Tuzzolino AJ, Tyliszczak T, Uesugi K, Velbel M, Vellenga J, Vicenzi E, Vincze L, Warren J, Weber I, Weisberg M, Westphal AJ, Wirick S, Wooden D, Wopenka B, Wozniakiewicz P, Wright I, Yabuta H, Yano H, Young ED, Zare RN, Zega T, Ziegler K, Zimmerman L, Zinner E, Zolensky M. Comet 81P/Wild 2 under a microscope. Science. 2006 Dec 15; 314(5806):1711-6. PMID: 17170289.
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      45. Flynn GJ, Bleuet P, Borg J, Bradley JP, Brenker FE, Brennan S, Bridges J, Brownlee DE, Bullock ES, Burghammer M, Clark BC, Dai ZR, Daghlian CP, Djouadi Z, Fakra S, Ferroir T, Floss C, Franchi IA, Gainsforth Z, Gallien JP, Gillet P, Grant PG, Graham GA, Green SF, Grossemy F, Heck PR, Herzog GF, Hoppe P, Hörz F, Huth J, Ignatyev K, Ishii HA, Janssens K, Joswiak D, Kearsley AT, Khodja H, Lanzirotti A, Leitner J, Lemelle L, Leroux H, Luening K, Macpherson GJ, Marhas KK, Marcus MA, Matrajt G, Nakamura T, Nakamura-Messenger K, Nakano T, Newville M, Papanastassiou DA, Pianetta P, Rao W, Riekel C, Rietmeijer FJ, Rost D, Schwandt CS, See TH, Sheffield-Parker J, Simionovici A, Sitnitsky I, Snead CJ, Stadermann FJ, Stephan T, Stroud RM, Susini J, Suzuki Y, Sutton SR, Taylor S, Teslich N, Troadec D, Tsou P, Tsuchiyama A, Uesugi K, Vekemans B, Vicenzi EP, Vincze L, Westphal AJ, Wozniakiewicz P, Zinner E, Zolensky ME. Elemental compositions of comet 81P/Wild 2 samples collected by Stardust. Science. 2006 Dec 15; 314(5806):1731-5. PMID: 17170294.
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      46. Zolensky ME, Zega TJ, Yano H, Wirick S, Westphal AJ, Weisberg MK, Weber I, Warren JL, Velbel MA, Tsuchiyama A, Tsou P, Toppani A, Tomioka N, Tomeoka K, Teslich N, Taheri M, Susini J, Stroud R, Stephan T, Stadermann FJ, Snead CJ, Simon SB, Simionovici A, See TH, Robert F, Rietmeijer FJ, Rao W, Perronnet MC, Papanastassiou DA, Okudaira K, Ohsumi K, Ohnishi I, Nakamura-Messenger K, Nakamura T, Mostefaoui S, Mikouchi T, Meibom A, Matrajt G, Marcus MA, Leroux H, Lemelle L, Le L, Lanzirotti A, Langenhorst F, Krot AN, Keller LP, Kearsley AT, Joswiak D, Jacob D, Ishii H, Harvey R, Hagiya K, Grossman L, Grossman JN, Graham GA, Gounelle M, Gillet P, Genge MJ, Flynn G, Ferroir T, Fallon S, Fakra S, Ebel DS, Dai ZR, Cordier P, Clark B, Chi M, Butterworth AL, Brownlee DE, Bridges JC, Brennan S, Brearley A, Bradley JP, Bleuet P, Bland PA, Bastien R. Mineralogy and petrology of comet 81P/Wild 2 nucleus samples. Science. 2006 Dec 15; 314(5806):1735-9. PMID: 17170295.
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      47. Freeman JL, Quinn CF, Marcus MA, Fakra S, Pilon-Smits EA. Selenium-tolerant diamondback moth disarms hyperaccumulator plant defense. Curr Biol. 2006 Nov 21; 16(22):2181-92. PMID: 17113382.
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      48. Freeman JL, Zhang LH, Marcus MA, Fakra S, McGrath SP, Pilon-Smits EA. Spatial imaging, speciation, and quantification of selenium in the hyperaccumulator plants Astragalus bisulcatus and Stanleya pinnata. Plant Physiol. 2006 Sep; 142(1):124-34. PMID: 16920881; PMCID: PMC1557614.
      49. Sarret G, Harada E, Choi YE, Isaure MP, Geoffroy N, Fakra S, Marcus MA, Birschwilks M, Clemens S, Manceau A. Trichomes of tobacco excrete zinc as zinc-substituted calcium carbonate and other zinc-containing compounds. Plant Physiol. 2006 Jul; 141(3):1021-34. PMID: 16731580; PMCID: PMC1489912.
      50. Ryser AL, Strawn DG, Marcus MA, Fakra S, Johnson-Maynard JL, Möller G. Microscopically focused synchrotron X-ray investigation of selenium speciation in soils developing on reclaimed mine lands. Environ Sci Technol. 2006 Jan 15; 40(2):462-7. PMID: 16468390.
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      51. Van Hoewyk D, Garifullina GF, Ackley AR, Abdel-Ghany SE, Marcus MA, Fakra S, Ishiyama K, Inoue E, Pilon M, Takahashi H, Pilon-Smits EA. Overexpression of AtCpNifS enhances selenium tolerance and accumulation in Arabidopsis. Plant Physiol. 2005 Nov; 139(3):1518-28. PMID: 16244144; PMCID: PMC1283786.
      52. Toner B, Fakra S, Villalobos M, Warwick T, Sposito G. Spatially resolved characterization of biogenic manganese oxide production within a bacterial biofilm. Appl Environ Microbiol. 2005 Mar; 71(3):1300-10. PMID: 15746332; PMCID: PMC1065152.
      53. Chan CS, De Stasio G, Welch SA, Girasole M, Frazer BH, Nesterova MV, Fakra S, Banfield JF. Microbial polysaccharides template assembly of nanocrystal fibers. Science. 2004 Mar 12; 303(5664):1656-8. PMID: 15016997.
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      54. Kilcoyne AL, Tyliszczak T, Steele WF, Fakra S, Hitchcock P, Franck K, Anderson E, Harteneck B, Rightor EG, Mitchell GE, Hitchcock AP, Yang L, Warwick T, Ade H. Interferometer-controlled scanning transmission X-ray microscopes at the Advanced Light Source. J Synchrotron Radiat. 2003 Mar 01; 10(Pt 2):125-36. PMID: 12606790.
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      55. Warwick T, Ade H, Kilcoyne D, Kritscher M, Tylisczcak T, Fakra S, Hitchcock A, Hitchcock P, Padmore H. A new bend-magnet beamline for scanning transmission X-ray microscopy at the Advanced Light Source. J Synchrotron Radiat. 2002 Jul 01; 9(Pt 4):254-7. PMID: 12091736.
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