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    Murphy, Sean

    TitleScientific Engr Assoc
    SchoolLawrence Berkeley National Lab
    DepartmentEnergy Analysis Env Impacts
    Address1 Cyclotron Road
    Berkeley CA 94720
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Singh TP, Weinstein JR, Murphy S. Stroke: Basic and Clinical. Adv Neurobiol. 2017; 15:281-293. PMID: 28674985.
        View in: PubMed
      2. Kaggal VC, Elayavilli RK, Mehrabi S, Pankratz JJ, Sohn S, Wang Y, Li D, Rastegar MM, Murphy S, Ross JL, Chaudhry R, Buntrock JD, Liu H. Toward a Learning Health-care System - Knowledge Delivery at the Point of Care Empowered by Big Data and NLP. Biomed Inform Insights. 2016; 8(Suppl 1):13-22. PMID: 27385912; PMCID: PMC4920204.
      3. Hausmann L, Murphy S. The challenges for scientific publishing, 60 years on. J Neurochem. 2016 Oct; 139 Suppl 2:280-287. PMID: 26997145.
        View in: PubMed
      4. Clifford L, Jia Q, Yadav H, Subramanian A, Wilson GA, Murphy S, Pathak J, Schroeder DR, Ereth MH, Kor DJ. Characterizing the epidemiology of perioperative transfusion-associated circulatory overload. Anesthesiology. 2015 Jan; 122(1):21-8. PMID: 25611653; PMCID: PMC4857710.
      5. Clifford L, Jia Q, Subramanian A, Yadav H, Wilson GA, Murphy S, Pathak J, Schroeder DR, Kor DJ. Characterizing the epidemiology of postoperative transfusion-related acute lung injury. Anesthesiology. 2015 Jan; 122(1):12-20. PMID: 25611652; PMCID: PMC4844077.
      6. Lee RJ, Kim JK, Chao D, Kuo L, Mally A, McClean ME, Pemberton HE, Wilmington AR, Wong J, Murphy S. Progesterone and allopregnanolone improves stroke outcome in male mice via distinct mechanisms but neither promotes neurogenesis. J Neurochem. 2015 Jan; 132(1):32-7. PMID: 25376903; PMCID: PMC4270875.
      7. Xu ZS, Yao A, Chu SS, Paun MK, McClintic AM, Murphy S, Mourad PD. Detection of mild traumatic brain injury in rodent models using shear wave elastography: preliminary studies. J Ultrasound Med. 2014 Oct; 33(10):1763-71. PMID: 25253822.
        View in: PubMed
      8. Sohn S, Clark C, Halgrim SR, Murphy S, Chute CG, Liu H. MedXN: an open source medication extraction and normalization tool for clinical text. J Am Med Inform Assoc. 2014 Sep-Oct; 21(5):858-65. PMID: 24637954; PMCID: PMC4147619.
      9. Murphy S, Bulman C, Shariati B, Hausmann L. Submitting a manuscript for peer review--integrity, integrity, integrity. J Neurochem. 2014 Feb; 128(3):341-3. PMID: 24410543; PMCID: PMC3926655.
      10. Murphy S, Lee RJ, McClean ME, Pemberton HE, Uo T, Morrison RS, Bastian C, Baltan S. MS-275, a class I histone deacetylase inhibitor, protects the p53-deficient mouse against ischemic injury. J Neurochem. 2014 May; 129(3):509-15. PMID: 24147654.
        View in: PubMed
      11. Baltan S, Morrison RS, Murphy S. Novel protective effects of histone deacetylase inhibition on stroke and white matter ischemic injury. Neurotherapeutics. 2013 Oct; 10(4):798-807. PMID: 23881453; PMCID: PMC3805855.
      12. Sohn S, Clark C, Halgrim SR, Murphy S, Jonnalagadda SR, Wagholikar KB, Wu ST, Chute CG, Liu H. Analysis of cross-institutional medication description patterns in clinical narratives. Biomed Inform Insights. 2013; 6(Suppl 1):7-16. PMID: 23847423; PMCID: PMC3702197.
      13. Xu ZS, Lee RJ, Chu SS, Yao A, Paun MK, Murphy S, Mourad PD. Evidence of changes in brain tissue stiffness after ischemic stroke derived from ultrasound-based elastography. J Ultrasound Med. 2013 Mar; 32(3):485-94. PMID: 23443189.
        View in: PubMed
      14. Gibson CL, Murphy AN, Murphy S. Stroke outcome in the ketogenic state--a systematic review of the animal data. J Neurochem. 2012 Nov; 123 Suppl 2:52-7. PMID: 23050642; PMCID: PMC3970216.
      15. Murphy S, Totten MK. Transformation and the governance agenda: keeping your board on track. Trustee. 2012 Nov-Dec; 65(10):Suppl 15-8. PMID: 23259225.
        View in: PubMed
      16. Savova GK, Olson JE, Murphy S, Cafourek VL, Couch FJ, Goetz MP, Ingle JN, Suman VJ, Chute CG, Weinshilboum RM. Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J Am Med Inform Assoc. 2012 Jun; 19(e1):e83-9. PMID: 22140207; PMCID: PMC3392847.
      17. Pathak J, Murphy S, Willaert BN, Kremers HM, Yawn BP, Rocca WA, Chute CG. Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project. AMIA Annu Symp Proc. 2011; 2011:1089-98. PMID: 22195170; PMCID: PMC3243205.
      18. Gibson CL, Coomber B, Murphy S. Progesterone is neuroprotective following cerebral ischaemia in reproductively ageing female mice. Brain. 2011 Jul; 134(Pt 7):2125-33. PMID: 21705427.
        View in: PubMed
      19. Baltan S, Bachleda A, Morrison RS, Murphy S. Expression of histone deacetylases in cellular compartments of the mouse brain and the effects of ischemia. Transl Stroke Res. 2011 Jun 04; 2(3):411-23. PMID: 21966324; PMCID: PMC3182145.
      20. Jayadev S, Nesser NK, Hopkins S, Myers SJ, Case A, Lee RJ, Seaburg LA, Uo T, Murphy S, Morrison RS, Garden GA. Transcription factor p53 influences microglial activation phenotype. Glia. 2011 Oct; 59(10):1402-13. PMID: 21598312; PMCID: PMC3143257.
      21. Baltan S, Murphy S, Danilov CA, Bachleda A, Morrison RS. Histone deacetylase inhibitors preserve white matter structure and function during ischemia by conserving ATP and reducing excitotoxicity. J Neurosci. 2011 Mar 16; 31(11):3990-9. PMID: 21411642; PMCID: PMC3061553.
      22. Nash DB, Murphy S, Mullaney AD. Governance: current trends in board education, competencies, and qualifications. Am J Med Qual. 2011 Jul-Aug; 26(4):278-83. PMID: 21189369.
        View in: PubMed
      23. Savova GK, Fan J, Ye Z, Murphy S, Zheng J, Chute CG, Kullo IJ. Discovering peripheral arterial disease cases from radiology notes using natural language processing. AMIA Annu Symp Proc. 2010 Nov 13; 2010:722-6. PMID: 21347073; PMCID: PMC3041293.
      24. Sohn S, Murphy S, Masanz JJ, Kocher JP, Savova GK. Classification of medication status change in clinical narratives. AMIA Annu Symp Proc. 2010 Nov 13; 2010:762-6. PMID: 21347081; PMCID: PMC3041444.
      25. Murphy S, Murphy AN. Pre-clinical systematic review. J Neurochem. 2010 Nov; 115(4):805. PMID: 21038509.
        View in: PubMed
      26. Gibson CL, Murphy S. Benefits of histone deacetylase inhibitors for acute brain injury: a systematic review of animal studies. J Neurochem. 2010 Nov; 115(4):806-13. PMID: 20831615; PMCID: PMC3062975.
      27. Gibson CL, Bath PM, Murphy S. G-CSF administration is neuroprotective following transient cerebral ischemia even in the absence of a functional NOS-2 gene. J Cereb Blood Flow Metab. 2010 Apr; 30(4):739-43. PMID: 20145659; PMCID: PMC2949157.
      28. Feighner BH, Chrétien JP, Murphy S, Skora JF, Coberly JS, Dietz JE, Chaffee JL, Sikes ML, Mabee MJ, Russell BP, Gaydos JC. The pandemic influenza policy model: a planning tool for military public health officials. Mil Med. 2009 Jun; 174(6):557-65. PMID: 19585765.
        View in: PubMed
      29. Murphy S, Bielby-Clarke K. Neuregulin signaling in neurons depends on ErbB4 interaction with PSD-95. Brain Res. 2008 May 01; 1207:32-5. PMID: 18374309.
        View in: PubMed
      30. Murphy S, Burkom H. Recombinant temporal aberration detection algorithms for enhanced biosurveillance. J Am Med Inform Assoc. 2008 Jan-Feb; 15(1):77-86. PMID: 17947614; PMCID: PMC2274875.
      31. Sun Y, Alexander SP, Garle MJ, Gibson CL, Hewitt K, Murphy S, Kendall DA, Bennett AJ. Cannabinoid activation of PPAR alpha; a novel neuroprotective mechanism. Br J Pharmacol. 2007 Nov; 152(5):734-43. PMID: 17906680; PMCID: PMC2190030.
      32. Burkom HS, Murphy S, Shmueli G. Automated time series forecasting for biosurveillance. Stat Med. 2007 Sep 30; 26(22):4202-18. PMID: 17335120.
        View in: PubMed
      33. Gibson CL, Gray LJ, Bath PM, Murphy S. Progesterone for the treatment of experimental brain injury; a systematic review. Brain. 2008 Feb; 131(Pt 2):318-28. PMID: 17715141.
        View in: PubMed
      34. Gibson CL, Gray LJ, Murphy S, Bath PM. Estrogens and experimental ischemic stroke: a systematic review. J Cereb Blood Flow Metab. 2006 Sep; 26(9):1103-13. PMID: 16437060.
        View in: PubMed
      35. Gibson CL, Jones NC, Prior MJ, Bath PM, Murphy S. G-CSF suppresses edema formation and reduces interleukin-1beta expression after cerebral ischemia in mice. J Neuropathol Exp Neurol. 2005 Sep; 64(9):763-9. PMID: 16141785.
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      36. Gibson CL, Coughlan TC, Murphy S. Glial nitric oxide and ischemia. Glia. 2005 Jun; 50(4):417-26. PMID: 15846796.
        View in: PubMed
      37. Gibson CL, Constantin D, Prior MJ, Bath PM, Murphy S. Progesterone suppresses the inflammatory response and nitric oxide synthase-2 expression following cerebral ischemia. Exp Neurol. 2005 Jun; 193(2):522-30. PMID: 15869954.
        View in: PubMed
      38. Gibson CL, Bath PM, Murphy S. G-CSF reduces infarct volume and improves functional outcome after transient focal cerebral ischemia in mice. J Cereb Blood Flow Metab. 2005 Apr; 25(4):431-9. PMID: 15660101.
        View in: PubMed
      39. Gibson CL, Murphy S. Progesterone enhances functional recovery after middle cerebral artery occlusion in male mice. J Cereb Blood Flow Metab. 2004 Jul; 24(7):805-13. PMID: 15241189.
        View in: PubMed
      40. Merrill JE, Murphy S, Mitrovic B, Mackenzie-Graham A, Dopp JC, Ding M, Griscavage J, Ignarro LJ, Lowenstein CJ. Inducible nitric oxide synthase and nitric oxide production by oligodendrocytes. J Neurosci Res. 1997 May 15; 48(4):372-84. PMID: 9169863.
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      41. Grzybicki DM, Kwack KB, Perlman S, Murphy S. Nitric oxide synthase type II expression by different cell types in MHV-JHM encephalitis suggests distinct roles for nitric oxide in acute versus persistent virus infection. J Neuroimmunol. 1997 Mar; 73(1-2):15-27. PMID: 9058755.
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