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    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Chakraborty, Romy

    TitleGeological Research Scientist
    SchoolLawrence Berkeley National Lab
    DepartmentEarth Sciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-4091

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Zhang P, Van Nostrand JD, He Z, Chakraborty R, Deng Y, Curtis D, Fields MW, Hazen TC, Arkin AP, Zhou J. A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction. Environ Sci Technol. 2015 Nov 3; 49(21):12922-31.
        View in: PubMed
      2. Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015; 6:8289.
        View in: PubMed
      3. Schicklberger M, Shapiro N, Loqué D, Woyke T, Chakraborty R. Draft Genome Sequence of Raoultella terrigena R1Gly, a Diazotrophic Endophyte. Genome Announc. 2015; 3(3).
        View in: PubMed
      4. Thorgersen MP, Lancaster WA, Vaccaro BJ, Poole FL, Rocha AM, Mehlhorn T, Pettenato A, Ray J, Waters RJ, Melnyk RA, Chakraborty R, Hazen TC, Deutschbauer AM, Arkin AP, Adams MW. Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments. Appl Environ Microbiol. 2015 Aug 1; 81(15):4976-83.
        View in: PubMed
      5. Ray J, Waters RJ, Skerker JM, Kuehl JV, Price MN, Huang J, Chakraborty R, Arkin AP, Deutschbauer A. Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site. Genome Announc. 2015; 3(3).
        View in: PubMed
      6. Ramsay BD, Hwang C, Woo HL, Carroll SL, Lucas S, Han J, Lapidus AL, Cheng JF, Goodwin LA, Pitluck S, Peters L, Chertkov O, Held B, Detter JC, Han CS, Tapia R, Land ML, Hauser LJ, Kyrpides NC, Ivanova NN, Mikhailova N, Pagani I, Woyke T, Arkin AP, Dehal P, Chivian D, Criddle CS, Wu W, Chakraborty R, Hazen TC, Fields MW. High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater. Genome Announc. 2015; 3(2).
        View in: PubMed
      7. Pedersen K, Bengtsson A, Edlund J, Rabe L, Hazen T, Chakraborty R, Goodwin L, Shapiro N. Complete Genome Sequence of the Subsurface, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio aespoeensis Aspo-2. Genome Announc. 2014; 2(3).
        View in: PubMed
      8. Lamendella R, Strutt S, Borglin S, Chakraborty R, Tas N, Mason OU, Hultman J, Prestat E, Hazen TC, Jansson JK. Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities. Front Microbiol. 2014; 5:130.
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      9. Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Anal Chem. 2013 Nov 19; 85(22):10856-62.
        View in: PubMed
      10. Dubinsky EA, Conrad ME, Chakraborty R, Bill M, Borglin SE, Hollibaugh JT, Mason OU, M Piceno Y, Reid FC, Stringfellow WT, Tom LM, Hazen TC, Andersen GL. Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico. Environ Sci Technol. 2013 Oct 1; 47(19):10860-7.
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      11. Brown SD, Utturkar SM, Arkin AP, Deutschbauer AM, Elias DA, Hazen TC, Chakraborty R. Draft Genome Sequence for Desulfovibrio africanus Strain PCS. Genome Announc. 2013 Mar-Apr; 1(2):e0014413.
        View in: PubMed
      12. Chakraborty R, Borglin SE, Dubinsky EA, Andersen GL, Hazen TC. Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico. Front Microbiol. 2012; 3:357.
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      13. Baelum J, Borglin S, Chakraborty R, Fortney JL, Lamendella R, Mason OU, Auer M, Zemla M, Bill M, Conrad ME, Malfatti SA, Tringe SG, Holman HY, Hazen TC, Jansson JK. Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol. 2012 Sep; 14(9):2405-16.
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      14. Chakraborty R, Wu CH, Hazen TC. Systems biology approach to bioremediation. Curr Opin Biotechnol. 2012 Jun; 23(3):483-90.
        View in: PubMed
      15. DeAngelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol. 2011 Sep; 77(18):6313-22.
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      16. Liu P, Meagher RJ, Light YK, Yilmaz S, Chakraborty R, Arkin AP, Hazen TC, Singh AK. Microfluidic fluorescence in situ hybridization and flow cytometry (µFlowFISH). Lab Chip. 2011 Aug 21; 11(16):2673-9.
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      17. Chakraborty R, Hazen TC, Joyner DC, Küsel K, Singer ME, Sitte J, Torok T. Use of immunomagnetic separation for the detection of Desulfovibrio vulgaris from environmental samples. J Microbiol Methods. 2011 Aug; 86(2):204-9.
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      18. Han R, Geller JT, Yang L, Brodie EL, Chakraborty R, Larsen JT, Beller HR. Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad. Environ Sci Technol. 2010 Oct 1; 44(19):7491-7.
        View in: PubMed
      19. Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science. 2010 Oct 8; 330(6001):204-8.
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      20. Hazen TC, Chakraborty R, Fleming JM, Gregory IR, Bowman JP, Jimenez L, Zhang D, Pfiffner SM, Brockman FJ, Sayler GS. Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE. Arch Microbiol. 2009 Mar; 191(3):221-32.
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      21. Faybishenko B, Hazen TC, Long PE, Brodie EL, Conrad ME, Hubbard SS, Christensen JN, Joyner D, Borglin SE, Chakraborty R, Williams KH, Peterson JE, Chen J, Brown ST, Tokunaga TK, Wan J, Firestone M, Newcomer DR, Resch CT, Cantrell KJ, Willett A, Koenigsberg S. In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol. 2008 Nov 15; 42(22):8478-85.
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      22. Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, Keasling JD. Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough. J Bacteriol. 2007 Aug; 189(16):5996-6010.
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      23. Tang YJ, Chakraborty R, Martín HG, Chu J, Hazen TC, Keasling JD. Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid. Appl Environ Microbiol. 2007 Jun; 73(12):3859-64.
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      24. Chakraborty R, O'Connor SM, Chan E, Coates JD. Anaerobic degradation of benzene, toluene, ethylbenzene, and xylene compounds by Dechloromonas strain RCB. Appl Environ Microbiol. 2005 Dec; 71(12):8649-55.
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      25. Chakraborty R, Coates JD. Hydroxylation and carboxylation--two crucial steps of anaerobic benzene degradation by Dechloromonas strain RCB. Appl Environ Microbiol. 2005 Sep; 71(9):5427-32.
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      26. Bender KS, Shang C, Chakraborty R, Belchik SM, Coates JD, Achenbach LA. Identification, characterization, and classification of genes encoding perchlorate reductase. J Bacteriol. 2005 Aug; 187(15):5090-6.
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      27. Coates JD, Chakraborty R, McInerney MJ. Anaerobic benzene biodegradation--a new era. Res Microbiol. 2002 Dec; 153(10):621-8.
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      28. Bender KS, O'Connor SM, Chakraborty R, Coates JD, Achenbach LA. Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probe. Appl Environ Microbiol. 2002 Oct; 68(10):4820-6.
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      29. Coates JD, Cole KA, Chakraborty R, O'Connor SM, Achenbach LA. Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration. Appl Environ Microbiol. 2002 May; 68(5):2445-52.
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