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    Sutormin, Roman

    TitleSoftware Developer 2
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
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      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Vinogradova SV, Sutormin R, Mironov AA, Soldatov RA. Probing-directed identification of novel structured RNAs. RNA Biol. 2016; 13(2):232-42. PMID: 26732206; PMCID: PMC4829316 [Available on 01/05/17].
      2. Leushkin EV, Logacheva MD, Penin AA, Sutormin R, Gerasimov ES, Kochkina GA, Ivanushkina NE, Vasilenko OV, Kondrashov AS, Ozerskaya SM. Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineages. BMC Genomics. 2015 May 21; 16:400. PMID: 25994131; PMCID: PMC4438637.
      3. Denisov SV, Bazykin GA, Sutormin R, Favorov AV, Mironov AA, Gelfand MS, Kondrashov AS. Weak negative and positive selection and the drift load at splice sites. Genome Biol Evol. 2014 May 14; 6(6):1437-47. PMID: 24966225; PMCID: PMC4079205.
      4. Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, Sutormin R, Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA. RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria. BMC Genomics. 2013 Nov 01; 14:745. PMID: 24175918; PMCID: PMC3840689.
      5. Leushkin EV, Sutormin R, Nabieva ER, Penin AA, Kondrashov AS, Logacheva MD. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics. 2013 Jul 15; 14:476. PMID: 23855885; PMCID: PMC3728226.
      6. Kurmangaliyev YZ, Sutormin R, Naumenko SA, Bazykin GA, Gelfand MS. Functional implications of splicing polymorphisms in the human genome. Hum Mol Genet. 2013 Sep 01; 22(17):3449-59. PMID: 23640990.
        View in: PubMed
      7. Nikulova AA, Favorov AV, Sutormin R, Makeev VJ, Mironov AA. CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation. Nucleic Acids Res. 2012 Jul; 40(12):e93. PMID: 22422836; PMCID: PMC3384346.
      8. Sadovskaya NS, Sutormin R, Gelfand MS. Recognition of transmembrane segments in proteins: review and consistency-based benchmarking of internet servers. J Bioinform Comput Biol. 2006 Oct; 4(5):1033-56. PMID: 17099940.
        View in: PubMed
      9. Sutormin R, Mironov AA. [Membrane probability profile construction based on amino acids sequences multiple alignment]. Mol Biol (Mosk). 2006 May-Jun; 40(3):541-5. PMID: 16813173.
        View in: PubMed
      10. Sutormin R, Rakhmaninova AB, Gelfand MS. BATMAS30: amino acid substitution matrix for alignment of bacterial transporters. Proteins. 2003 Apr 01; 51(1):85-95. PMID: 12596266.
        View in: PubMed
      11. Kalinina OV, Makeev VJ, Sutormin R, Gelfand MS, Rakhmaninova AB. The channel in transporters is formed by residues that are rare in transmembrane helices. In Silico Biol. 2003; 3(1-2):197-204. PMID: 14524337.
        View in: PubMed

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