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    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Long, Philip

    TitleGeological Project Scientist
    SchoolLawrence Berkeley National Lab
    DepartmentEarth Sciences
    AddressSpokane WA
    Phone509/531-2987

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. McGuinness LR, Wilkins MJ, Williams KH, Long PE, Kerkhof LJ. Identification of Bacteria Synthesizing Ribosomal RNA in Response to Uranium Addition During Biostimulation at the Rifle, CO Integrated Field Research Site. PLoS One. 2015; 10(9):e0137270.
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      2. Lezama-Pacheco JS, Cerrato JM, Veeramani H, Alessi DS, Suvorova E, Bernier-Latmani R, Giammar DE, Long PE, Williams KH, Bargar JR. Long-Term in Situ Oxidation of Biogenic Uraninite in an Alluvial Aquifer: Impact of Dissolved Oxygen and Calcium. Environ Sci Technol. 2015 Jun 16; 49(12):7340-7.
        View in: PubMed
      3. Koribanics NM, Tuorto SJ, Lopez-Chiaffarelli N, McGuinness LR, Häggblom MM, Williams KH, Long PE, Kerkhof LJ. Spatial Distribution of an Uranium-Respiring Betaproteobacterium at the Rifle, CO Field Research Site. PLoS One. 2015; 10(4):e0123378.
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      4. Alessi DS, Lezama-Pacheco JS, Janot N, Suvorova EI, Cerrato JM, Giammar DE, Davis JA, Fox PM, Williams KH, Long PE, Handley KM, Bernier-Latmani R, Bargar JR. Speciation and Reactivity of Uranium Products Formed during in Situ Bioremediation in a Shallow Alluvial Aquifer. Environ Sci Technol. 2014 Nov 4; 48(21):12842-50.
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      5. Bao C, Wu H, Li L, Newcomer D, Long PE, Williams KH. Uranium Bioreduction Rates across Scales: Biogeochemical Hot Moments and Hot Spots during a Biostimulation Experiment at Rifle, Colorado. Environ Sci Technol. 2014 Sep 2; 48(17):10116-27.
        View in: PubMed
      6. Mouser PJ, N'Guessan LA, Qafoku NP, Sinha M, Williams KH, Dangelmayr M, Resch CT, Peacock A, Wang Z, Figueroa L, Long PE. Influence of Carbon and Microbial Community Priming on the Attenuation of Uranium in a Contaminated Floodplain Aquifer. Ground Water. 2015 Jul; 53(4):600-13.
        View in: PubMed
      7. Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environ Microbiol. 2015 Mar; 17(3):622-36.
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      8. Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield JF. Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J. 2014 Jul; 8(7):1452-63.
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      9. Williams KH, Wilkins MJ, N'Guessan AL, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE. Field evidence of selenium bioreduction in a uranium-contaminated aquifer. Environ Microbiol Rep. 2013 Jun; 5(3):444-52.
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      10. Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface. PLoS One. 2013; 8(3):e57819.
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      11. Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR. Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater. ISME J. 2013 Jul; 7(7):1286-98.
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      12. Shiel AE, Laubach PG, Johnson TM, Lundstrom CC, Long PE, Williams KH. No measurable changes in (238)U/(235)U due to desorption-adsorption of U(VI) from groundwater at the Rifle, Colorado, integrated field research challenge site. Environ Sci Technol. 2013 Mar 19; 47(6):2535-41.
        View in: PubMed
      13. Zachara JM, Long PE, Bargar J, Davis JA, Fox P, Fredrickson JK, Freshley MD, Konopka AE, Liu C, McKinley JP, Rockhold ML, Williams KH, Yabusaki SB. Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone. J Contam Hydrol. 2013 Apr; 147:45-72.
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      14. Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR. Molecular analysis of the in situ growth rates of subsurface Geobacter species. Appl Environ Microbiol. 2013 Mar; 79(5):1646-53.
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      15. Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. ISME J. 2013 Apr; 7(4):800-16.
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      16. Chandler DP, Knickerbocker C, Bryant L, Golova J, Wiles C, Williams KH, Peacock AD, Long PE. Profiling in situ microbial community structure with an amplification microarray. Appl Environ Microbiol. 2013 Feb; 79(3):799-807.
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      17. Fang Y, Wilkins MJ, Yabusaki SB, Lipton MS, Long PE. Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by using proteomic data from a field biostimulation experiment. Appl Environ Microbiol. 2012 Dec; 78(24):8735-42.
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      18. Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ, Long PE, Lovley DR. Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation. ISME J. 2013 Feb; 7(2):370-83.
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      19. Luef B, Fakra SC, Csencsits R, Wrighton KC, Williams KH, Wilkins MJ, Downing KH, Long PE, Comolli LR, Banfield JF. Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth. ISME J. 2013 Feb; 7(2):338-50.
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      20. Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science. 2012 Sep 28; 337(6102):1661-5.
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      21. Jin H, Zhang Y, Buchko GW, Varnum SM, Robinson H, Squier TC, Long PE. Structure determination and functional analysis of a chromate reductase from Gluconacetobacter hansenii. PLoS One. 2012; 7(8):e42432.
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      22. Jin H, Squier TC, Long PE. Dying for Good: Virus-Bacterium Biofilm Co-evolution Enhances Environmental Fitness. Biochem Insights. 2012; 5:1-9.
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      23. Handley KM, Wrighton KC, Piceno YM, Andersen GL, DeSantis TZ, Williams KH, Wilkins MJ, N'Guessan AL, Peacock A, Bargar J, Long PE, Banfield JF. High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment. FEMS Microbiol Ecol. 2012 Jul; 81(1):188-204.
        View in: PubMed
      24. Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch CT, Wu L, He Z, Li G, Hazen TC, Lovley DR, Zhou J. Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction. Appl Environ Microbiol. 2012 Apr; 78(8):2966-72.
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      25. Barlett M, Moon HS, Peacock AA, Hedrick DB, Williams KH, Long PE, Lovley D, Jaffe PR. Uranium reduction and microbial community development in response to stimulation with different electron donors. Biodegradation. 2012 Jul; 23(4):535-46.
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      26. Campbell KM, Veeramani H, Ulrich KU, Blue LY, Giammar DE, Bernier-Latmani R, Stubbs JE, Suvorova E, Yabusaki S, Lezama-Pacheco JS, Mehta A, Long PE, Bargar JR. Oxidative Dissolution of Biogenic Uraninite in Groundwater at Old Rifle, CO. Environ Sci Technol. 2011 Oct 15; 45(20):8748-54.
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      27. Yabusaki SB, Fang Y, Williams KH, Murray CJ, Ward AL, Dayvault RD, Waichler SR, Newcomer DR, Spane FA, Long PE. Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment. J Contam Hydrol. 2011 Nov 1; 126(3-4):271-90.
        View in: PubMed
      28. Kerkhof LJ, Williams KH, Long PE, McGuinness LR. Phase preference by active, acetate-utilizing bacteria at the rifle, CO integrated field research challenge site. Environ Sci Technol. 2011 Feb 15; 45(4):1250-6.
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      29. Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS. Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI). Microb Biotechnol. 2011 Jan; 4(1):55-63.
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      30. Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR. Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model. J Contam Hydrol. 2011 Mar 25; 122(1-4):96-103.
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      31. Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H, Smith RD, Lovley DR, Lipton MS, Long PE. Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles. Environ Sci Technol. 2010 Dec 1; 44(23):8897-903.
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      32. N'Guessan AL, Moon HS, Peacock AD, Tan H, Sinha M, Long PE, Jaffé PR. Postbiostimulation microbial community structure changes that control the reoxidation of uranium. FEMS Microbiol Ecol. 2010 Oct; 74(1):184-95.
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      33. Bopp CJ, Lundstrom CC, Johnson TM, Sanford RA, Long PE, Williams KH. Uranium 238U/235U isotope ratios as indicators of reduction: results from an in situ biostimulation experiment at Rifle, Colorado, U.S.A. Environ Sci Technol. 2010 Aug 1; 44(15):5927-33.
        View in: PubMed
      34. Chandler DP, Kukhtin A, Mokhiber R, Knickerbocker C, Ogles D, Rudy G, Golova J, Long P, Peacock A. Monitoring microbial community structure and dynamics during in situ U(VI) bioremediation with a field-portable microarray analysis system. Environ Sci Technol. 2010 Jul 15; 44(14):5516-22.
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      35. Moon HS, McGuinness L, Kukkadapu RK, Peacock AD, Komlos J, Kerkhof LJ, Long PE, Jaffé PR. Microbial reduction of uranium under iron- and sulfate-reducing conditions: Effect of amended goethite on microbial community composition and dynamics. Water Res. 2010 Jul; 44(14):4015-28.
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      36. Elifantz H, N'Guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR. Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations. FEMS Microbiol Ecol. 2010 Sep; 73(3):441-9.
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      37. Williams KH, Nevin KP, Franks A, Englert A, Long PE, Lovley DR. Electrode-based approach for monitoring in situ microbial activity during subsurface bioremediation. Environ Sci Technol. 2010 Jan 1; 44(1):47-54.
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      38. Hyun SP, Fox PM, Davis JA, Campbell KM, Hayes KF, Long PE. Surface complexation modeling of U(VI) adsorption by aquifer sediments from a former mill tailings site at Rifle, Colorado. Environ Sci Technol. 2009 Dec 15; 43(24):9368-73.
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      39. N'Guessan AL, Elifantz H, Nevin KP, Mouser PJ, Methé B, Woodard TL, Manley K, Williams KH, Wilkins MJ, Larsen JT, Long PE, Lovley DR. Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer. ISME J. 2010 Feb; 4(2):253-66.
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      40. Qafoku NP, Kukkadapu RK, McKinley JP, Arey BW, Kelly SD, Wang C, Resch CT, Long PE. Uranium in framboidal pyrite from a naturally bioreduced alluvial sediment. Environ Sci Technol. 2009 Nov 15; 43(22):8528-34.
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      41. Williams KH, Kemna A, Wilkins MJ, Druhan J, Arntzen E, N'Guessan AL, Long PE, Hubbard SS, Banfield JF. Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation. Environ Sci Technol. 2009 Sep 1; 43(17):6717-23.
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      42. Melton SJ, Yu H, Williams KH, Morris SA, Long PE, Blake DA. Field-based detection and monitoring of uranium in contaminated groundwater using two immunosensors. Environ Sci Technol. 2009 Sep 1; 43(17):6703-9.
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      43. Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, Banfield JF. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Appl Environ Microbiol. 2009 Oct; 75(20):6591-9.
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      44. Mouser PJ, N'Guessan AL, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR. Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater. Environ Sci Technol. 2009 Jun 15; 43(12):4386-92.
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      45. Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation. Microb Biotechnol. 2009 Mar; 2(2):274-86.
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      46. Faybishenko B, Hazen TC, Long PE, Brodie EL, Conrad ME, Hubbard SS, Christensen JN, Joyner D, Borglin SE, Chakraborty R, Williams KH, Peterson JE, Chen J, Brown ST, Tokunaga TK, Wan J, Firestone M, Newcomer DR, Resch CT, Cantrell KJ, Willett A, Koenigsberg S. In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol. 2008 Nov 15; 42(22):8478-85.
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      47. Druhan JL, Conrad ME, Williams KH, N'Guessan L, Long PE, Hubbard SS. Sulfur isotopes as indicators of amended bacterial sulfate reduction processes influencing field scale uranium bioremediation. Environ Sci Technol. 2008 Nov 1; 42(21):7842-9.
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      48. Hedrick DB, Peacock AD, Lovley DR, Woodard TL, Nevin KP, Long PE, White DC. Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor. J Ind Microbiol Biotechnol. 2009 Feb; 36(2):205-9.
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      49. Hedrick DB, Peacock AD, Long P, White DC. Multiply methyl-branched fatty acids and diacids in the polar lipids of a microaerophilic subsurface microbial community. Lipids. 2008 Sep; 43(9):843-51.
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      50. Hubbard SS, Williams K, Conrad ME, Faybishenko B, Peterson J, Chen J, Long P, Hazent T. Geophysical monitoring of hydrological and biogeochemical transformations associated with Cr(VI) bioremediation. Environ Sci Technol. 2008 May 15; 42(10):3757-65.
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      51. N'Guessan AL, Vrionis HA, Resch CT, Long PE, Lovley DR. Sustained removal of uranium from contaminated groundwater following stimulation of dissimilatory metal reduction. Environ Sci Technol. 2008 Apr 15; 42(8):2999-3004.
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      52. Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP, Chavan MA, Johnson JP, Long PE, Lovley DR. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments. ISME J. 2007 Dec; 1(8):663-77.
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      53. Yabusaki SB, Fang Y, Long PE, Resch CT, Peacock AD, Komlos J, Jaffe PR, Morrison SJ, Dayvault RD, White DC, Anderson RT. Uranium removal from groundwater via in situ biostimulation: Field-scale modeling of transport and biological processes. J Contam Hydrol. 2007 Aug 15; 93(1-4):216-35.
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      54. Chandler DP, Jarrell AE, Roden ER, Golova J, Chernov B, Schipma MJ, Peacock AD, Long PE. Suspension array analysis of 16S rRNA from Fe- and SO(4)2- reducing bacteria in uranium-contaminated sediments undergoing bioremediation. Appl Environ Microbiol. 2006 Jul; 72(7):4672-87.
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      55. Schryver JC, Brandt CC, Pfiffner SM, Palumbo AV, Peacock AD, White DC, McKinley JP, Long PE. Application of nonlinear analysis methods for identifying relationships between microbial community structure and groundwater geochemistry. Microb Ecol. 2006 Feb; 51(2):177-88.
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      56. Chang YJ, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA, Stephen JR, Dayvault R, Ortiz-Bernad I, Lovley DR, White DC. Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI). Environ Sci Technol. 2005 Dec 1; 39(23):9039-48.
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      57. Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR. Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site. Appl Environ Microbiol. 2005 Oct; 71(10):6308-18.
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      58. Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, Dayvault R, Karp K, Marutzky S, Metzler DR, Peacock A, White DC, Lowe M, Lovley DR. Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer. Appl Environ Microbiol. 2003 Oct; 69(10):5884-91.
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      59. Elias DA, Krumholz LR, Wong D, Long PE, Suflita JM. Characterization of microbial activities and U reduction in a shallow aquifer contaminated by uranium mill tailings. Microb Ecol. 2003 Jul; 46(1):83-91.
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      60. Chang YJ, Peacock AD, Long PE, Stephen JR, McKinley JP, Macnaughton SJ, Hussain AK, Saxton AM, White DC. Diversity and characterization of sulfate-reducing bacteria in groundwater at a uranium mill tailings site. Appl Environ Microbiol. 2001 Jul; 67(7):3149-60.
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      61. Ivanova IA, Stephen JR, Chang YJ, Brüggemann J, Long PE, McKinley JP, Kowalchuk GA, White DC, Macnaughton SJ. A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the beta-subdivision of the class proteobacteria in contaminated groundwater. Can J Microbiol. 2000 Nov; 46(11):1012-20.
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      62. Brockman FJ, Kieft TL, Fredrickson JK, Bjornstad BN, Li SM, Spangenburg W, Long PE. Microbiology of vadose zone paleosols in south-central Washington State. Microb Ecol. 1992 May; 23(3):279-301.
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