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    Shih, Patrick

    TitleBiologist Postdoc Fellow
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
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      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Aznar A, Chalvin C, Shih P, Maimann M, Ebert B, Birdseye DS, Loqué D, Scheller HV. Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass. Biotechnol Biofuels. 2018; 11:2. PMID: 29321811.
        View in: PubMed
      2. Shih P, Ward LM, Fischer WW. Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi. Proc Natl Acad Sci U S A. 2017 Oct 03; 114(40):10749-10754. PMID: 28923961.
        View in: PubMed
      3. Shih P, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D. A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nat Commun. 2016 Oct 26; 7:13215. PMID: 27782150.
        View in: PubMed
      4. Shih P, Hemp J, Ward LM, Matzke NJ, Fischer WW. Crown group Oxyphotobacteria postdate the rise of oxygen. Geobiology. 2017 Jan; 15(1):19-29. PMID: 27392323.
        View in: PubMed
      5. Shih P, Liang Y, Loqué D. Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops. Plant J. 2016 Jul; 87(1):103-17. PMID: 27030440.
        View in: PubMed
      6. Shih P, Occhialini A, Cameron JC, Andralojc PJ, Parry MA, Kerfeld CA. Biochemical characterization of predicted Precambrian RuBisCO. Nat Commun. 2016 Jan 21; 7:10382. PMID: 26790750; PMCID: PMC4735906.
      7. Shih P. Photosynthesis and early Earth. Curr Biol. 2015 Oct 05; 25(19):R855-9. PMID: 26439346.
        View in: PubMed
      8. Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, Ajioka J, Baulcombe DC, Zipfel C, Kamoun S, Jones JD, Kuhn H, Robatzek S, Van Esse HP, Sanders D, Oldroyd G, Martin C, Field R, O'Connor S, Fox S, Wulff B, Miller B, Breakspear A, Radhakrishnan G, Delaux PM, Loqué D, Granell A, Tissier A, Shih P, Brutnell TP, Quick WP, Rischer H, Fraser PD, Aharoni A, Raines C, South PF, Ané JM, Hamberger BR, Langdale J, Stougaard J, Bouwmeester H, Udvardi M, Murray JA, Ntoukakis V, Schäfer P, Denby K, Edwards KJ, Osbourn A, Haseloff J. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytol. 2015 Oct; 208(1):13-9. PMID: 26171760.
        View in: PubMed
      9. Shih P. Cyanobacterial evolution: fresh insight into ancient questions. Curr Biol. 2015 Mar 02; 25(5):R192-3. PMID: 25734266.
        View in: PubMed
      10. Shih P, Zarzycki J, Niyogi KK, Kerfeld CA. Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium. J Biol Chem. 2014 Apr 04; 289(14):9493-500. PMID: 24558040; PMCID: PMC3975000.
      11. Matzke NJ, Shih P, Kerfeld CA. Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer. PLoS One. 2014; 9(1):e85103. PMID: 24465485; PMCID: PMC3897415.
      12. Shih P, Matzke NJ. Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins. Proc Natl Acad Sci U S A. 2013 Jul 23; 110(30):12355-60. PMID: 23776247; PMCID: PMC3725117.
      13. Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih P, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J. 2013 Nov; 7(11):2178-91. PMID: 23739051; PMCID: PMC3806265.
      14. Chábera P, Durchan M, Shih P, Kerfeld CA, Polívka T. Excited-state properties of the 16kDa red carotenoid protein from Arthrospira maxima. Biochim Biophys Acta. 2011 Jan; 1807(1):30-5. PMID: 20813093.
        View in: PubMed
      15. Jung HS, Okegawa Y, Shih P, Kellogg E, Abdel-Ghany SE, Pilon M, Sjölander K, Shikanai T, Niyogi KK. Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport. PLoS One. 2010 Jul 21; 5(7):e11688. PMID: 20657737; PMCID: PMC2908147.

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