Loading...
Sign in to edit your profile (add interests, overview, photo, etc.)

    Price, Morgan

    TitleCompl Biologist Res Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentEnviron Genomics & Systems Bio
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/643-3722
    vCardDownload vCard

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Sagawa S, Price M, Deutschbauer AM, Arkin AP. Validating regulatory predictions from diverse bacteria with mutant fitness data. PLoS One. 2017; 12(5):e0178258. PMID: 28542589.
        View in: PubMed
      2. Price M, Wetmore KM, Deutschbauer AM, Arkin AP. A Comparison of the Costs and Benefits of Bacterial Gene Expression. PLoS One. 2016; 11(10):e0164314. PMID: 27711251.
        View in: PubMed
      3. Price M, Arkin AP. A Theoretical Lower Bound for Selection on the Expression Levels of Proteins. Genome Biol Evol. 2016; 8(6):1917-28. PMID: 27289091.
        View in: PubMed
      4. Price M, Arkin AP. Weakly Deleterious Mutations and Low Rates of Recombination Limit the Impact of Natural Selection on Bacterial Genomes. MBio. 2015; 6(6). PMID: 26670382.
        View in: PubMed
      5. Rubin BE, Wetmore KM, Price M, Diamond S, Shultzaberger RK, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proc Natl Acad Sci U S A. 2015 Dec 1; 112(48):E6634-43. PMID: 26508635.
        View in: PubMed
      6. Vaccaro BJ, Thorgersen MP, Lancaster WA, Price M, Wetmore KM, Poole FL, Deutschbauer A, Arkin AP, Adams MW. Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses. Appl Environ Microbiol. 2015; 82(1):51-61. PMID: 26452555.
        View in: PubMed
      7. Ray J, Waters RJ, Skerker JM, Kuehl JV, Price M, Huang J, Chakraborty R, Arkin AP, Deutschbauer A. Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site. Genome Announc. 2015; 3(3). PMID: 25977418.
        View in: PubMed
      8. Wetmore KM, Price M, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. MBio. 2015; 6(3). PMID: 25968644.
        View in: PubMed
      9. Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price M, Iavarone AT, Deutschbauer AM, Arkin AP, Coates JD. Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase. MBio. 2015; 6(3). PMID: 25968643.
        View in: PubMed
      10. Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price M, Deutschbauer AM, Arkin AP, Coates JD. Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate. ISME J. 2015 Jun; 9(6):1295-305. PMID: 25405978.
        View in: PubMed
      11. Price M, Ray J, Wetmore KM, Kuehl JV, Bauer S, Deutschbauer AM, Arkin AP. The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Front Microbiol. 2014; 5:577. PMID: 25400629.
        View in: PubMed
      12. Deutschbauer A, Price M, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM. Towards an informative mutant phenotype for every bacterial gene. J Bacteriol. 2014 Oct 15; 196(20):3643-55. PMID: 25112473.
        View in: PubMed
      13. Shao W, Price M, Deutschbauer AM, Romine MF, Arkin AP. Conservation of Transcription Start Sites within Genes across a Bacterial Genus. MBio. 2014; 5(4). PMID: 24987095.
        View in: PubMed
      14. Kuehl JV, Price M, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A. Functional Genomics with a Comprehensive Library of Transposon Mutants for the Sulfate-Reducing Bacterium Desulfovibrio alaskensis G20. MBio. 2014; 5(3). PMID: 24865553.
        View in: PubMed
      15. Korte HL, Fels SR, Christensen GA, Price M, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD. Genetic basis for nitrate resistance in Desulfovibrio strains. Front Microbiol. 2014; 5:153. PMID: 24795702.
        View in: PubMed
      16. Meyer B, Kuehl JV, Price M, Ray J, Deutschbauer AM, Arkin AP, Stahl DA. The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf. Environ Microbiol. 2014 Nov; 16(11):3463-86. PMID: 24447568.
        View in: PubMed
      17. Novichkov PS, Li X, Kuehl JV, Deutschbauer AM, Arkin AP, Price M, Rodionov DA. Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria. Environ Microbiol. 2014 Jan; 16(1):1-8. PMID: 24118949.
        View in: PubMed
      18. Skerker JM, Leon D, Price M, Mar JS, Tarjan DR, Wetmore KM, Deutschbauer AM, Baumohl JK, Bauer S, Ibáñez AB, Mitchell VD, Wu CH, Hu P, Hazen T, Arkin AP. Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates. Mol Syst Biol. 2013; 9:674. PMID: 23774757.
        View in: PubMed
      19. Price M, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP. Indirect and suboptimal control of gene expression is widespread in bacteria. Mol Syst Biol. 2013; 9:660. PMID: 23591776.
        View in: PubMed
      20. Meyer B, Kuehl J, Deutschbauer AM, Price M, Arkin AP, Stahl DA. Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth. J Bacteriol. 2013 Mar; 195(5):990-1004. PMID: 23264581.
        View in: PubMed
      21. Baran R, Bowen BP, Price M, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. ACS Chem Biol. 2013 Jan 18; 8(1):189-99. PMID: 23082955.
        View in: PubMed
      22. Kazakov AE, Rodionov DA, Price M, Arkin AP, Dubchak I, Novichkov PS. Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes. J Bacteriol. 2013 Jan; 195(1):29-38. PMID: 23086211.
        View in: PubMed
      23. McDonald D, Price M, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012 Mar; 6(3):610-8. PMID: 22134646.
        View in: PubMed
      24. Deutschbauer A, Price M, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. PLoS Genet. 2011 Nov; 7(11):e1002385. PMID: 22125499.
        View in: PubMed
      25. Rajeev L, Luning EG, Dehal PS, Price M, Arkin AP, Mukhopadhyay A. Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium. Genome Biol. 2011; 12(10):R99. PMID: 21992415.
        View in: PubMed
      26. Chhabra SR, Butland G, Elias DA, Chandonia JM, Fok OY, Juba TR, Gorur A, Allen S, Leung CM, Keller KL, Reveco S, Zane GM, Semkiw E, Prathapam R, Gold B, Singer M, Ouellet M, Szakal ED, Jorgens D, Price M, Witkowska HE, Beller HR, Arkin AP, Hazen TC, Biggin MD, Auer M, Wall JD, Keasling JD. Generalized schemes for high-throughput manipulation of the Desulfovibrio vulgaris genome. Appl Environ Microbiol. 2011 Nov; 77(21):7595-604. PMID: 21908633.
        View in: PubMed
      27. Price M, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP. Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J Bacteriol. 2011 Oct; 193(20):5716-27. PMID: 21840973.
        View in: PubMed
      28. Chhabra SR, Joachimiak MP, Petzold CJ, Zane GM, Price M, Reveco SA, Fok V, Johanson AR, Batth TS, Singer M, Chandonia JM, Joyner D, Hazen TC, Arkin AP, Wall JD, Singh AK, Keasling JD. Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough. PLoS One. 2011; 6(6):e21470. PMID: 21738675.
        View in: PubMed
      29. Hauser LJ, Land ML, Brown SD, Larimer F, Keller KL, Rapp-Giles BJ, Price M, Lin M, Bruce DC, Detter JC, Tapia R, Han CS, Goodwin LA, Cheng JF, Pitluck S, Copeland A, Lucas S, Nolan M, Lapidus AL, Palumbo AV, Wall JD. Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20. J Bacteriol. 2011 Aug; 193(16):4268-9. PMID: 21685289.
        View in: PubMed
      30. Oh J, Fung E, Price M, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Res. 2010 Aug; 38(14):e146. PMID: 20494978.
        View in: PubMed
      31. He Q, He Z, Joyner DC, Joachimiak M, Price M, Yang ZK, Yen HC, Hemme CL, Chen W, Fields MM, Stahl DA, Keasling JD, Keller M, Arkin AP, Hazen TC, Wall JD, Zhou J. Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris. ISME J. 2010 Nov; 4(11):1386-97. PMID: 20445634.
        View in: PubMed
      32. Price M, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One. 2010; 5(3):e9490. PMID: 20224823.
        View in: PubMed
      33. Dehal PS, Joachimiak MP, Price M, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 2010 Jan; 38(Database issue):D396-400. PMID: 19906701.
        View in: PubMed
      34. Price M, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009 Jul; 26(7):1641-50. PMID: 19377059.
        View in: PubMed
      35. Price M, Dehal PS, Arkin AP. FastBLAST: homology relationships for millions of proteins. PLoS One. 2008; 3(10):e3589. PMID: 18974889.
        View in: PubMed
      36. Price M, Dehal PS, Arkin AP. Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol. 2008; 9(1):R4. PMID: 18179685.
        View in: PubMed
      37. Price M, Dehal PS, Arkin AP. Orthologous transcription factors in bacteria have different functions and regulate different genes. PLoS Comput Biol. 2007 Sep; 3(9):1739-50. PMID: 17845071.
        View in: PubMed
      38. Price M, Arkin AP, Alm EJ. The life-cycle of operons. PLoS Genet. 2006 Jun; 2(6):e96. PMID: 16789824.
        View in: PubMed
      39. Price M, Alm EJ, Arkin AP. The histidine operon is ancient. J Mol Evol. 2006 Jun; 62(6):807-8. PMID: 16612542.
        View in: PubMed
      40. Price M, Arkin AP, Alm EJ. OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments. BMC Bioinformatics. 2006; 7:19. PMID: 16412220.
        View in: PubMed
      41. Alm EJ, Huang KH, Price M, Koche RP, Keller K, Dubchak IL, Arkin AP. The MicrobesOnline Web site for comparative genomics. Genome Res. 2005 Jul; 15(7):1015-22. PMID: 15998914.
        View in: PubMed
      42. Price M, Alm EJ, Arkin AP. Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication. Nucleic Acids Res. 2005; 33(10):3224-34. PMID: 15942025.
        View in: PubMed
      43. Price M, Huang KH, Arkin AP, Alm EJ. Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res. 2005 Jun; 15(6):809-19. PMID: 15930492.
        View in: PubMed
      44. Price M, Huang KH, Alm EJ, Arkin AP. A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Res. 2005; 33(3):880-92. PMID: 15701760.
        View in: PubMed
      45. Price M, Rieffel E. Finding coexpressed genes in counts-based data: an improved measure with validation experiments. Bioinformatics. 2004 Apr 12; 20(6):945-52. PMID: 14751974.
        View in: PubMed

      A U.S. Department of Energy National Laboratory Managed by the University of California

      This site is running Profiles RNS version v2.10.0-410-g1c0064ed.