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    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Shatsky, Maxim

    TitleCmpl Biologist Research SE
    SchoolLawrence Berkeley National Lab
    DepartmentPhysical Biosciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/642-9614

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Shatsky M, Arbelaez P, Han BG, Typke D, Brenner SE, Malik J, Glaeser RM. Automated particle correspondence and accurate tilt-axis detection in tilted-image pairs. J Struct Biol. 2014 Jul; 187(1):66-75.
        View in: PubMed
      2. Shatsky M, Arbelaez P, Glaeser RM, Brenner SE. Optimal and fast rotational alignment of volumes with missing data in Fourier space. J Struct Biol. 2013 Nov; 184(2):345-7.
        View in: PubMed
      3. Walian PJ, Allen S, Shatsky M, Zeng L, Szakal ED, Liu H, Hall SC, Fisher SJ, Lam BR, Singer ME, Geller JT, Brenner SE, Chandonia JM, Hazen TC, Witkowska HE, Biggin MD, Jap BK. High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris. J Proteome Res. 2012 Dec 7; 11(12):5720-35.
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      4. Zhi D, Shatsky M, Brenner SE. Alignment-free local structural search by writhe decomposition. Bioinformatics. 2010 May 1; 26(9):1176-84.
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      5. Shatsky M, Hall RJ, Nogales E, Malik J, Brenner SE. Automated multi-model reconstruction from single-particle electron microscopy data. J Struct Biol. 2010 Apr; 170(1):98-108.
        View in: PubMed
      6. Han BG, Dong M, Liu H, Camp L, Geller J, Singer M, Hazen TC, Choi M, Witkowska HE, Ball DA, Typke D, Downing KH, Shatsky M, Brenner SE, Chandonia JM, Biggin MD, Glaeser RM. Survey of large protein complexes in D. vulgaris reveals great structural diversity. Proc Natl Acad Sci U S A. 2009 Sep 29; 106(39):16580-5.
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      7. Shatsky M, Hall RJ, Brenner SE, Glaeser RM. A method for the alignment of heterogeneous macromolecules from electron microscopy. J Struct Biol. 2009 Apr; 166(1):67-78.
        View in: PubMed
      8. Shulman-Peleg A, Shatsky M, Nussinov R, Wolfson HJ. MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. 2008 Jul 1; 36(Web Server issue):W260-4.
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      9. Shulman-Peleg A, Shatsky M, Nussinov R, Wolfson HJ. Prediction of interacting single-stranded RNA bases by protein-binding patterns. J Mol Biol. 2008 May 30; 379(2):299-316.
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      10. Shatsky M, Nussinov R, Wolfson HJ. Algorithms for multiple protein structure alignment and structure-derived multiple sequence alignment. Methods Mol Biol. 2008; 413:125-46.
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      11. Shulman-Peleg A, Shatsky M, Nussinov R, Wolfson HJ. Spatial chemical conservation of hot spot interactions in protein-protein complexes. BMC Biol. 2007; 5:43.
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      12. Lasker K, Dror O, Shatsky M, Nussinov R, Wolfson HJ. EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps. IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar; 4(1):28-39.
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      13. Shatsky M, Shulman-Peleg A, Nussinov R, Wolfson HJ. The multiple common point set problem and its application to molecule binding pattern detection. J Comput Biol. 2006 Mar; 13(2):407-28.
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      14. Shatsky M, Nussinov R, Wolfson HJ. Optimization of multiple-sequence alignment based on multiple-structure alignment. Proteins. 2006 Jan 1; 62(1):209-17.
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      15. Wolfson HJ, Shatsky M, Schneidman-Duhovny D, Dror O, Shulman-Peleg A, Ma B, Nussinov R. From structure to function: methods and applications. Curr Protein Pept Sci. 2005 Apr; 6(2):171-83.
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      16. Shatsky M, Nussinov R, Wolfson HJ. A method for simultaneous alignment of multiple protein structures. Proteins. 2004 Jul 1; 56(1):143-56.
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      17. Shatsky M, Dror O, Schneidman-Duhovny D, Nussinov R, Wolfson HJ. BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. 2004 Jul 1; 32(Web Server issue):W503-7.
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      18. Shatsky M, Nussinov R, Wolfson HJ. FlexProt: alignment of flexible protein structures without a predefinition of hinge regions. J Comput Biol. 2004; 11(1):83-106.
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      19. Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I, Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ. Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking. Proteins. 2003 Jul 1; 52(1):107-12.
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      20. Shatsky M, Nussinov R, Wolfson HJ. Flexible protein alignment and hinge detection. Proteins. 2002 Aug 1; 48(2):242-56.
        View in: PubMed
      21. Ma B, Shatsky M, Wolfson HJ, Nussinov R. Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations. Protein Sci. 2002 Feb; 11(2):184-97.
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