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    22833 Publications
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    Firestone, Mary

    TitleGeological Scientist Faculty
    SchoolLawrence Berkeley National Lab
    DepartmentEarth Sciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/642-3677

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. MBio. 2015; 6(4).
        View in: PubMed
      2. Barnard RL, Osborne CA, Firestone MK. Changing precipitation pattern alters soil microbial community response to wet-up under a Mediterranean-type climate. ISME J. 2015; 9:946-57.
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      3. Blazewicz SJ, Schwartz E, Firestone MK. Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil. Ecology. 2014 May; 95(5):1162-72.
        View in: PubMed
      4. Doll HM, Armitage DW, Daly RA, Emerson JB, Goltsman DS, Yelton AP, Kerekes J, Firestone MK, Potts MD. Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains. BMC Microbiol. 2013; 13:259.
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      5. Barnard RL, Osborne CA, Firestone MK. Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. ISME J. 2013 Nov; 7(11):2229-41.
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      6. Blazewicz SJ, Barnard RL, Daly RA, Firestone MK. Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. ISME J. 2013 Nov; 7(11):2061-8.
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      7. Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK. Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. FEMS Microbiol Ecol. 2013 Jul; 85(1):179-94.
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      8. Placella SA, Firestone MK. Transcriptional response of nitrifying communities to wetting of dry soil. Appl Environ Microbiol. 2013 May; 79(10):3294-302.
        View in: PubMed
      9. Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK. An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. Environ Microbiol. 2013 Jun; 15(6):1870-81.
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      10. Throckmorton HM, Bird JA, Dane L, Firestone MK, Horwath WR. The source of microbial C has little impact on soil organic matter stabilisation in forest ecosystems. Ecol Lett. 2012 Nov; 15(11):1257-65.
        View in: PubMed
      11. Placella SA, Brodie EL, Firestone MK. Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proc Natl Acad Sci U S A. 2012 Jul 3; 109(27):10931-6.
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      12. DeAngelis KM, Firestone MK. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes. Appl Environ Microbiol. 2012 Apr; 78(7):2459-61.
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      13. Herman DJ, Firestone MK, Nuccio E, Hodge A. Interactions between an arbuscular mycorrhizal fungus and a soil microbial community mediating litter decomposition. FEMS Microbiol Ecol. 2012 Apr; 80(1):236-47.
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      14. Petersen DG, Blazewicz SJ, Firestone M, Herman DJ, Turetsky M, Waldrop M. Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska. Environ Microbiol. 2012 Apr; 14(4):993-1008.
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      15. Brodie EL, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC. Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater. Chemosphere. 2011 Oct; 85(4):660-5.
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      16. Shi S, Richardson AE, O'Callaghan M, DeAngelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. Effects of selected root exudate components on soil bacterial communities. FEMS Microbiol Ecol. 2011 Sep; 77(3):600-10.
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      17. Wang JM, Firestone MK, Beissinger SR. Microbial and environmental effects on avian egg viability: do tropical mechanisms act in a temperate environment? Ecology. 2011 May; 92(5):1137-45.
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      18. Cusack DF, Silver WL, Torn MS, Burton SD, Firestone MK. Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests. Ecology. 2011 Mar; 92(3):621-32.
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      19. DeAngelis KM, Silver WL, Thompson AW, Firestone MK. Microbial communities acclimate to recurring changes in soil redox potential status. Environ Microbiol. 2010 Dec; 12(12):3137-49.
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      20. Dubinsky EA, Silver WL, Firestone MK. Tropical forest soil microbial communities couple iron and carbon biogeochemistry. Ecology. 2010 Sep; 91(9):2604-12.
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      21. Shawkey MD, Firestone MK, Brodie EL, Beissinger SR. Avian incubation inhibits growth and diversification of bacterial assemblages on eggs. PLoS One. 2009; 4(2):e4522.
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      22. Tokunaga TK, Wan J, Kim Y, Daly RA, Brodie EL, Hazen TC, Herman D, Firestone MK. Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment. Environ Sci Technol. 2008 Dec 1; 42(23):8901-7.
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      23. Faybishenko B, Hazen TC, Long PE, Brodie EL, Conrad ME, Hubbard SS, Christensen JN, Joyner D, Borglin SE, Chakraborty R, Williams KH, Peterson JE, Chen J, Brown ST, Tokunaga TK, Wan J, Firestone M, Newcomer DR, Resch CT, Cantrell KJ, Willett A, Koenigsberg S. In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol. 2008 Nov 15; 42(22):8478-85.
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      24. DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. ISME J. 2009 Feb; 3(2):168-78.
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      25. Wan J, Tokunaga TK, Kim Y, Brodie E, Daly R, Hazen TC, Firestone MK. Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment. Environ Sci Technol. 2008 Oct 15; 42(20):7573-9.
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      26. DeAngelis KM, Lindow SE, Firestone MK. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. FEMS Microbiol Ecol. 2008 Nov; 66(2):197-207.
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      27. DeAngelis KM, Firestone MK, Lindow SE. Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities. Appl Environ Microbiol. 2007 Jun; 73(11):3724-7.
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      28. Wallenstein MD, Myrold DD, Firestone M, Voytek M. Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecol Appl. 2006 Dec; 16(6):2143-52.
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      29. Waldrop MP, Firestone MK. Response of microbial community composition and function to soil climate change. Microb Ecol. 2006 Nov; 52(4):716-24.
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      30. Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol. 2006 Sep; 72(9):6288-98.
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      31. Waldrop MP, Firestone MK. Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils. Microb Ecol. 2006 Oct; 52(3):470-9.
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      32. DeAngelis KM, Ji P, Firestone MK, Lindow SE. Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere. Appl Environ Microbiol. 2005 Dec; 71(12):8537-47.
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      33. Pett-Ridge J, Firestone MK. Redox fluctuation structures microbial communities in a wet tropical soil. Appl Environ Microbiol. 2005 Nov; 71(11):6998-7007.
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      34. Tokunaga TK, Wan J, Pena J, Brodie EL, Firestone MK, Hazen TC, Sutton SR, Lanzirotti A, Newville M. Uranium reduction in sediments under diffusion-limited transport of organic carbon. Environ Sci Technol. 2005 Sep 15; 39(18):7077-83.
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      35. Wan J, Tokunaga TK, Brodie E, Wang Z, Zheng Z, Herman D, Hazen TC, Firestone MK, Sutton SR. Reoxidation of bioreduced uranium under reducing conditions. Environ Sci Technol. 2005 Aug 15; 39(16):6162-9.
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      36. Waldrop MP, Firestone MK. Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities. Oecologia. 2004 Jan; 138(2):275-84.
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      37. Tokunaga TK, Wan J, Firestone MK, Hazen TC, Olson KR, Herman DJ, Sutton SR, Lanzirotti A. In situ reduction of chromium(VI) in heavily contaminated soils through organic carbon amendment. J Environ Qual. 2003 Sep-Oct; 32(5):1641-9.
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      38. Tokunaga TK, Wan J, Hazen TC, Schwartz E, Firestone MK, Sutton SR, Newville M, Olson KR, Lanzirotti A, Rao W. Distribution of chromium contamination and microbial activity in soil aggregates. J Environ Qual. 2003 Mar-Apr; 32(2):541-9.
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      39. Miya RK, Firestone MK. Enhanced phenanthrene biodegradation in soil by slender oat root exudates and root debris. J Environ Qual. 2001 Nov-Dec; 30(6):1911-8.
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      40. Tokunaga TK, Wan J, Firestone MK, Hazen TC, Schwartz E, Sutton SR, Newville M. Chromium diffusion and reduction in soil aggregates. Environ Sci Technol. 2001 Aug 1; 35(15):3169-74.
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      41. Hu S, Chapin FS, Firestone MK, Field CB, Chiariello NR. Nitrogen limitation of microbial decomposition in a grassland under elevated CO2. Nature. 2001 Jan 11; 409(6817):188-91.
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      42. Halverson LJ, Firestone MK. Differential effects of permeating and nonpermeating solutes on the fatty acid composition of Pseudomonas putida. Appl Environ Microbiol. 2000 Jun; 66(6):2414-21.
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      43. Holden PA, Hunt JR, Firestone MK. Toluene diffusion and reaction in unsaturated Pseudomonas putida biofilms. Biotechnol Bioeng. 1997 Dec 20; 56(6):656-70.
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      44. Holden PA, Halverson LJ, Firestone MK. Water stress effects on toluene biodegradation by Pseudomonas putida. Biodegradation. 1997; 8(3):143-51.
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      45. Stark JM, Firestone MK. Mechanisms for soil moisture effects on activity of nitrifying bacteria. Appl Environ Microbiol. 1995 Jan; 61(1):218-21.
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      46. Roberson EB, Firestone MK. Relationship between Desiccation and Exopolysaccharide Production in a Soil Pseudomonas sp. Appl Environ Microbiol. 1992 Apr; 58(4):1284-91.
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      47. Norton JM, Firestone MK. Metabolic status of bacteria and fungi in the rhizosphere of ponderosa pine seedlings. Appl Environ Microbiol. 1991 Apr; 57(4):1161-7.
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      48. Schimel JP, Firestone MK, Killham KS. Identification of heterotrophic nitrification in a sierran forest soil. Appl Environ Microbiol. 1984 Oct; 48(4):802-6.
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      49. Killham K, Firestone MK. Proline transport increases growth efficiency in salt-stressed Streptomyces griseus. Appl Environ Microbiol. 1984 Jul; 48(1):239-41.
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      50. Killham K, Firestone MK. Salt stress control of intracellular solutes in streptomycetes indigenous to saline soils. Appl Environ Microbiol. 1984 Feb; 47(2):301-6.
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      51. Firestone MK, Killham K, McColl JG. Fungal toxicity of mobilized soil aluminum and manganese. Appl Environ Microbiol. 1983 Sep; 46(3):758-61.
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      52. Firestone MK, Tiedje JM. Temporal change in nitrous oxide and dinitrogen from denitrification following onset of anaerobiosis. Appl Environ Microbiol. 1979 Oct; 38(4):673-9.
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      53. Firestone MK, Tiedje JM. Pathway of degradation of nitrilotriacetate by a Pseudomonas species. Appl Environ Microbiol. 1978 May; 35(5):955-61.
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      54. Firestone MK, Tiedje JM. Biodegradation of metal-nitrilotriacetate complexes by a Pseudomonas species: mechanism of reaction. Appl Microbiol. 1975 Jun; 29(6):758-64.
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