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    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Bloom, Joshua

    TitlePhysicist Faculty Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentPhysics
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/643-3839

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Bloom JS, Kotenko I, Sadhu MJ, Treusch S, Albert FW, Kruglyak L. Genetic interactions contribute less than additive effects to quantitative trait variation in yeast. Nat Commun. 2015; 6:8712.
        View in: PubMed
      2. Ghosh R, Bloom JS, Mohammadi A, Schumer ME, Andolfatto P, Ryu W, Kruglyak L. Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans. Genetics. 2015 Aug; 200(4):1327-39.
        View in: PubMed
      3. Andersen EC, Shimko TC, Crissman JR, Ghosh R, Bloom JS, Seidel HS, Gerke JP, Kruglyak L. A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains. G3 (Bethesda). 2015; 5(5):911-20.
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      4. Treusch S, Albert FW, Bloom JS, Kotenko IE, Kruglyak L. Genetic Mapping of MAPK-Mediated Complex Traits Across S. cerevisiae. PLoS Genet. 2015 Jan; 11(1):e1004913.
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      5. Andersen EC, Bloom JS, Gerke JP, Kruglyak L. A Variant in the Neuropeptide Receptor npr-1 is a Major Determinant of Caenorhabditis elegans Growth and Physiology. PLoS Genet. 2014 Feb; 10(2):e1004156.
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      6. Albert FW, Treusch S, Shockley AH, Bloom JS, Kruglyak L. Genetics of single-cell protein abundance variation in large yeast populations. Nature. 2014 Feb 27; 506(7489):494-7.
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      7. Ofek EO, Sullivan M, Cenko SB, Kasliwal MM, Gal-Yam A, Kulkarni SR, Arcavi I, Bildsten L, Bloom JS, Horesh A, Howell DA, Filippenko AV, Laher R, Murray D, Nakar E, Nugent PE, Silverman JM, Shaviv NJ, Surace J, Yaron O. An outburst from a massive star 40?days before a supernova explosion. Nature. 2013 Feb 7; 494(7435):65-7.
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      8. Bloom JS, Ehrenreich IM, Loo WT, Lite TL, Kruglyak L. Finding the sources of missing heritability in a yeast cross. Nature. 2013 Feb 14; 494(7436):234-7.
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      9. Andersen EC, Gerke JP, Shapiro JA, Crissman JR, Ghosh R, Bloom JS, Félix MA, Kruglyak L. Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity. Nat Genet. 2012 Mar; 44(3):285-90.
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      10. Khan Z, Bloom JS, Amini S, Singh M, Perlman DH, Caudy AA, Kruglyak L. Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS. Mol Syst Biol. 2012; 8:602.
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      11. Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biol. 2011; 12(12):R122.
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      12. Li W, Bloom JS, Podsiadlowski P, Miller AA, Cenko SB, Jha SW, Sullivan M, Howell DA, Nugent PE, Butler NR, Ofek EO, Kasliwal MM, Richards JW, Stockton A, Shih HY, Bildsten L, Shara MM, Bibby J, Filippenko AV, Ganeshalingam M, Silverman JM, Kulkarni SR, Law NM, Poznanski D, Quimby RM, McCully C, Patel B, Maguire K, Shen KJ. Exclusion of a luminous red giant as a companion star to the progenitor of supernova SN 2011fe. Nature. 2011 Dec 15; 480(7377):348-50.
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      13. Nugent PE, Sullivan M, Cenko SB, Thomas RC, Kasen D, Howell DA, Bersier D, Bloom JS, Kulkarni SR, Kandrashoff MT, Filippenko AV, Silverman JM, Marcy GW, Howard AW, Isaacson HT, Maguire K, Suzuki N, Tarlton JE, Pan YC, Bildsten L, Fulton BJ, Parrent JT, Sand D, Podsiadlowski P, Bianco FB, Dilday B, Graham ML, Lyman J, James P, Kasliwal MM, Law NM, Quimby RM, Hook IM, Walker ES, Mazzali P, Pian E, Ofek EO, Gal-Yam A, Poznanski D. Supernova SN 2011fe from an exploding carbon-oxygen white dwarf star. Nature. 2011 Dec 15; 480(7377):344-7.
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      14. Sternberg A, Gal-Yam A, Simon JD, Leonard DC, Quimby RM, Phillips MM, Morrell N, Thompson IB, Ivans I, Marshall JL, Filippenko AV, Marcy GW, Bloom JS, Patat F, Foley RJ, Yong D, Penprase BE, Beeler DJ, Allende Prieto C, Stringfellow GS. Circumstellar material in type Ia supernovae via sodium absorption features. Science. 2011 Aug 12; 333(6044):856-9.
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      15. Bloom JS, Giannios D, Metzger BD, Cenko SB, Perley DA, Butler NR, Tanvir NR, Levan AJ, O'Brien PT, Strubbe LE, De Colle F, Ramirez-Ruiz E, Lee WH, Nayakshin S, Quataert E, King AR, Cucchiara A, Guillochon J, Bower GC, Fruchter AS, Morgan AN, van der Horst AJ. A possible relativistic jetted outburst from a massive black hole fed by a tidally disrupted star. Science. 2011 Jul 8; 333(6039):203-6.
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      16. Plazas-Mayorca MD, Bloom JS, Zeissler U, Leroy G, Young NL, DiMaggio PA, Krugylak L, Schneider R, Garcia BA. Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown. Mol Biosyst. 2010 Sep; 6(9):1719-29.
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      17. Poznanski D, Chornock R, Nugent PE, Bloom JS, Filippenko AV, Ganeshalingam M, Leonard DC, Li W, Thomas RC. An unusually fast-evolving supernova. Science. 2010 Jan 1; 327(5961):58-60.
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      18. Khan Z, Bloom JS, Garcia BA, Singh M, Kruglyak L. Protein quantification across hundreds of experimental conditions. Proc Natl Acad Sci U S A. 2009 Sep 15; 106(37):15544-8.
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      19. Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA. Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 2009; 10:221.
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      20. Khan Z, Bloom JS, Kruglyak L, Singh M. A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. Bioinformatics. 2009 Jul 1; 25(13):1609-16.
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      21. Chen HP, Lin A, Bloom JS, Khan AH, Park CC, Smith DJ. Screening reveals conserved and nonconserved transcriptional regulatory elements including an E3/E4 allele-dependent APOE coding region enhancer. Genomics. 2008 Nov; 92(5):292-300.
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      22. Park CC, Ahn S, Bloom JS, Lin A, Wang RT, Wu T, Sekar A, Khan AH, Farr CJ, Lusis AJ, Leahy RM, Lange K, Smith DJ. Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids. Nat Genet. 2008 Apr; 40(4):421-9.
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      23. Chin MH, Qian WJ, Wang H, Petyuk VA, Bloom JS, Sforza DM, Lacan G, Liu D, Khan AH, Cantor RM, Bigelow DJ, Melega WP, Camp DG, Smith RD, Smith DJ. Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson's disease. J Proteome Res. 2008 Feb; 7(2):666-77.
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      24. Fynbo JP, Watson D, Thöne CC, Sollerman J, Bloom JS, Davis TM, Hjorth J, Jakobsson P, Jørgensen UG, Graham JF, Fruchter AS, Bersier D, Kewley L, Cassan A, Cerón JM, Foley S, Gorosabel J, Hinse TC, Horne KD, Jensen BL, Klose S, Kocevski D, Marquette JB, Perley D, Ramirez-Ruiz E, Stritzinger MD, Vreeswijk PM, Wijers RA, Woller KG, Xu D, Zub M. No supernovae associated with two long-duration gamma-ray bursts. Nature. 2006 Dec 21; 444(7122):1047-9.
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