Sign in to edit your profile (add interests, overview, photo, etc.)
    LBNL Profiles Metrics
    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Coates, John

    TitleGeological Scientist Faculty
    SchoolLawrence Berkeley National Lab
    DepartmentEarth Sciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/643-8455

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Melnyk RA, Coates JD. The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer. BMC Genomics. 2015; 16(1):862.
        View in: PubMed
      2. Clark IC, Melnyk RA, Youngblut MD, Carlson HK, Iavarone AT, Coates JD. Synthetic and Evolutionary Construction of a Chlorate-Reducing Shewanella oneidensis MR-1. MBio. 2015; 6(3).
        View in: PubMed
      3. Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price MN, Iavarone AT, Deutschbauer AM, Arkin AP, Coates JD. Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase. MBio. 2015; 6(3).
        View in: PubMed
      4. Carlström CI, Loutey D, Bauer S, Clark IC, Rohde RA, Iavarone AT, Lucas L, Coates JD. (Per)Chlorate-reducing bacteria can utilize aerobic and anaerobic pathways of aromatic degradation with (per)chlorate as an electron acceptor. MBio. 2015; 6(2).
        View in: PubMed
      5. Costa NL, Carlson HK, Coates JD, Louro RO, Paquete CM. Heterologous expression and purification of a multiheme cytochrome from a Gram-positive bacterium capable of performing extracellular respiration. Protein Expr Purif. 2015 Jul; 111:48-52.
        View in: PubMed
      6. Carlson HK, Stoeva MK, Justice NB, Sczesnak A, Mullan MR, Mosqueda LA, Kuehl JV, Deutschbauer AM, Arkin AP, Coates JD. Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms. Environ Sci Technol. 2015 Mar 17; 49(6):3727-36.
        View in: PubMed
      7. Carlström CI, Loutey DE, Wang O, Engelbrektson A, Clark I, Lucas LN, Somasekhar PY, Coates JD. Phenotypic and Genotypic Description of Sedimenticola selenatireducens Strain CUZ, a Marine (Per)Chlorate-Respiring Gammaproteobacterium, and Its Close Relative the Chlorate-Respiring Sedimenticola Strain NSS. Appl Environ Microbiol. 2015 Apr 15; 81(8):2717-26.
        View in: PubMed
      8. Gregoire P, Engelbrektson A, Hubbard CG, Metlagel Z, Csencsits R, Auer M, Conrad ME, Thieme J, Northrup P, Coates JD. Control of sulfidogenesis through bio-oxidation of H2S coupled to (per)chlorate reduction. Environ Microbiol Rep. 2014 Dec; 6(6):558-64.
        View in: PubMed
      9. Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price MN, Deutschbauer AM, Arkin AP, Coates JD. Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate. ISME J. 2015 Jun; 9(6):1295-305.
        View in: PubMed
      10. Hubbard CG, Cheng Y, Engelbrekston A, Druhan JL, Li L, Ajo-Franklin JB, Coates JD, Conrad ME. Isotopic insights into microbial sulfur cycling in oil reservoirs. Front Microbiol. 2014; 5:480.
        View in: PubMed
      11. Clark IC, Melnyk RA, Iavarone AT, Novichkov PS, Coates JD. Chlorate reduction in Shewanella algae ACDC is a recently acquired metabolism characterized by gene loss, suboptimal regulation and oxidative stress. Mol Microbiol. 2014 Oct; 94(1):107-25.
        View in: PubMed
      12. Engelbrektson A, Hubbard CG, Tom LM, Boussina A, Jin YT, Wong H, Piceno YM, Carlson HK, Conrad ME, Anderson G, Coates JD. Inhibition of microbial sulfate reduction in a flow-through column system by (per)chlorate treatment. Front Microbiol. 2014; 5:315.
        View in: PubMed
      13. Miller LG, Baesman SM, Carlström CI, Coates JD, Oremland RS. Methane oxidation linked to chlorite dismutation. Front Microbiol. 2014; 5:275.
        View in: PubMed
      14. Kandasamy N, Hardy B, Page L, Schaffner M, Graggaber J, Powlson AS, Fletcher PC, Gurnell M, Coates J. Cortisol shifts financial risk preferences. Proc Natl Acad Sci U S A. 2014 Mar 4; 111(9):3608-13.
        View in: PubMed
      15. Melnyk RA, Clark IC, Liao A, Coates JD. Transposon and Deletion Mutagenesis of Genes Involved in Perchlorate Reduction in Azospira suillum PS. MBio. 2013; 5(1).
        View in: PubMed
      16. Clark IC, Melnyk RA, Engelbrektson A, Coates JD. Structure and evolution of chlorate reduction composite transposons. MBio. 2013; 4(4).
        View in: PubMed
      17. Zhu H, Carlson HK, Coates JD. Applicability of anaerobic nitrate-dependent Fe(II) oxidation to microbial enhanced oil recovery (MEOR). Environ Sci Technol. 2013 Aug 6; 47(15):8970-7.
        View in: PubMed
      18. Carlson HK, Iavarone AT, Coates JD. Surfaceomics and surface-enhanced Raman spectroscopy of environmental microbes: matching cofactors with redox-active surface proteins. Proteomics. 2013 Oct; 13(18-19):2761-5.
        View in: PubMed
      19. Carlström CI, Wang O, Melnyk RA, Bauer S, Lee J, Engelbrektson A, Coates JD. Physiological and genetic description of dissimilatory perchlorate reduction by the novel marine bacterium Arcobacter sp. strain CAB. MBio. 2013; 4(3):e00217-13.
        View in: PubMed
      20. Carlson HK, Clark IC, Blazewicz SJ, Iavarone AT, Coates JD. Fe(II) oxidation is an innate capability of nitrate-reducing bacteria that involves abiotic and biotic reactions. J Bacteriol. 2013 Jul; 195(14):3260-8.
        View in: PubMed
      21. Van Trump JI, Rivera Vega FJ, Coates JD. Natural organic matter as global antennae for primary production. Astrobiology. 2013 May; 13(5):476-82.
        View in: PubMed
      22. Byrne-Bailey KG, Coates JD. Complete genome sequence of the anaerobic perchlorate-reducing bacterium Azospira suillum strain PS. J Bacteriol. 2012 May; 194(10):2767-8.
        View in: PubMed
      23. Byrne-Bailey KG, Weber KA, Coates JD. Draft genome sequence of the anaerobic, nitrate-dependent, Fe(II)-oxidizing bacterium Pseudogulbenkiania ferrooxidans strain 2002. J Bacteriol. 2012 May; 194(9):2400-1.
        View in: PubMed
      24. Carlson HK, Clark IC, Melnyk RA, Coates JD. Toward a mechanistic understanding of anaerobic nitrate-dependent iron oxidation: balancing electron uptake and detoxification. Front Microbiol. 2012; 3:57.
        View in: PubMed
      25. Carlson HK, Iavarone AT, Gorur A, Yeo BS, Tran R, Melnyk RA, Mathies RA, Auer M, Coates JD. Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria. Proc Natl Acad Sci U S A. 2012 Jan 31; 109(5):1702-7.
        View in: PubMed
      26. Wrighton KC, Thrash JC, Melnyk RA, Bigi JP, Byrne-Bailey KG, Remis JP, Schichnes D, Auer M, Chang CJ, Coates JD. Evidence for direct electron transfer by a gram-positive bacterium isolated from a microbial fuel cell. Appl Environ Microbiol. 2011 Nov; 77(21):7633-9.
        View in: PubMed
      27. Melnyk RA, Engelbrektson A, Clark IC, Carlson HK, Byrne-Bailey K, Coates JD. Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes. Appl Environ Microbiol. 2011 Oct; 77(20):7401-4.
        View in: PubMed
      28. Van Trump JI, Wrighton KC, Thrash JC, Weber KA, Andersen GL, Coates JD. Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils. MBio. 2011; 2(4):e00044-11.
        View in: PubMed
      29. Weber KA, Thrash JC, Van Trump JI, Achenbach LA, Coates JD. Environmental and taxonomic bacterial diversity of anaerobic uranium(IV) bio-oxidation. Appl Environ Microbiol. 2011 Jul; 77(13):4693-6.
        View in: PubMed
      30. Heinnickel M, Smith SC, Koo J, O'Connor SM, Coates JD. A bioassay for the detection of perchlorate in the ppb range. Environ Sci Technol. 2011 Apr 1; 45(7):2958-64.
        View in: PubMed
      31. Byrne-Bailey KG, Wrighton KC, Melnyk RA, Agbo P, Hazen TC, Coates JD. Complete genome sequence of the electricity-producing "Thermincola potens" strain JR. J Bacteriol. 2010 Aug; 192(15):4078-9.
        View in: PubMed
      32. Wrighton KC, Virdis B, Clauwaert P, Read ST, Daly RA, Boon N, Piceno Y, Andersen GL, Coates JD, Rabaey K. Bacterial community structure corresponds to performance during cathodic nitrate reduction. ISME J. 2010 Nov; 4(11):1443-55.
        View in: PubMed
      33. Thrash JC, Ahmadi S, Torok T, Coates JD. Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactor. Appl Environ Microbiol. 2010 Jul; 76(14):4730-7.
        View in: PubMed
      34. Thrash JC, Pollock J, Torok T, Coates JD. Description of the novel perchlorate-reducing bacteria Dechlorobacter hydrogenophilus gen. nov., sp. nov.and Propionivibrio militaris, sp. nov. Appl Microbiol Biotechnol. 2010 Mar; 86(1):335-43.
        View in: PubMed
      35. Thieme J, Sedlmair J, Gleber SC, Prietzel J, Coates J, Eusterhues K, Abbt-Braun G, Salome M. X-ray spectromicroscopy in soil and environmental sciences. J Synchrotron Radiat. 2010 Mar; 17(2):149-57.
        View in: PubMed
      36. Byrne-Bailey KG, Weber KA, Chair AH, Bose S, Knox T, Spanbauer TL, Chertkov O, Coates JD. Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY. J Bacteriol. 2010 Mar; 192(5):1475-6.
        View in: PubMed
      37. Sun Y, Gustavson RL, Ali N, Weber KA, Westphal LL, Coates JD. Behavioral response of dissimilatory perchlorate-reducing bacteria to different electron acceptors. Appl Microbiol Biotechnol. 2009 Oct; 84(5):955-63.
        View in: PubMed
      38. Weber KA, Hedrick DB, Peacock AD, Thrash JC, White DC, Achenbach LA, Coates JD. Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002. Appl Microbiol Biotechnol. 2009 Jun; 83(3):555-65.
        View in: PubMed
      39. Van Trump JI, Coates JD. Thermodynamic targeting of microbial perchlorate reduction by selective electron donors. ISME J. 2009 Apr; 3(4):466-76.
        View in: PubMed
      40. Wrighton KC, Agbo P, Warnecke F, Weber KA, Brodie EL, DeSantis TZ, Hugenholtz P, Andersen GL, Coates JD. A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J. 2008 Nov; 2(11):1146-56.
        View in: PubMed
      41. Thrash JC, Coates JD. Review: Direct and indirect electrical stimulation of microbial metabolism. Environ Sci Technol. 2008 Jun 1; 42(11):3921-31.
        View in: PubMed
      42. Pollock J, Weber KA, Lack J, Achenbach LA, Mormile MR, Coates JD. Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp. isolated from salt flat sediments of Soap Lake. Appl Microbiol Biotechnol. 2007 Dec; 77(4):927-34.
        View in: PubMed
      43. Thrash JC, Van Trump JI, Weber KA, Miller E, Achenbach LA, Coates JD. Electrochemical stimulation of microbial perchlorate reduction. Environ Sci Technol. 2007 Mar 1; 41(5):1740-6.
        View in: PubMed
      44. Kerin EJ, Gilmour CC, Roden E, Suzuki MT, Coates JD, Mason RP. Mercury methylation by dissimilatory iron-reducing bacteria. Appl Environ Microbiol. 2006 Dec; 72(12):7919-21.
        View in: PubMed
      45. Weber KA, Achenbach LA, Coates JD. Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction. Nat Rev Microbiol. 2006 Oct; 4(10):752-64.
        View in: PubMed
      46. Van Trump JI, Sun Y, Coates JD. Microbial interactions with humic substances. Adv Appl Microbiol. 2006; 60:55-96.
        View in: PubMed
      47. Weber KA, Pollock J, Cole KA, O'Connor SM, Achenbach LA, Coates JD. Anaerobic nitrate-dependent iron(II) bio-oxidation by a novel lithoautotrophic betaproteobacterium, strain 2002. Appl Environ Microbiol. 2006 Jan; 72(1):686-94.
        View in: PubMed
      48. Chakraborty R, O'Connor SM, Chan E, Coates JD. Anaerobic degradation of benzene, toluene, ethylbenzene, and xylene compounds by Dechloromonas strain RCB. Appl Environ Microbiol. 2005 Dec; 71(12):8649-55.
        View in: PubMed
      49. Chakraborty R, Coates JD. Hydroxylation and carboxylation--two crucial steps of anaerobic benzene degradation by Dechloromonas strain RCB. Appl Environ Microbiol. 2005 Sep; 71(9):5427-32.
        View in: PubMed
      50. Coates JD, Cole KA, Michaelidou U, Patrick J, McInerney MJ, Achenbach LA. Biological control of hog waste odor through stimulated microbial Fe(III) reduction. Appl Environ Microbiol. 2005 Aug; 71(8):4728-35.
        View in: PubMed
      51. Bender KS, Shang C, Chakraborty R, Belchik SM, Coates JD, Achenbach LA. Identification, characterization, and classification of genes encoding perchlorate reductase. J Bacteriol. 2005 Aug; 187(15):5090-6.
        View in: PubMed
      52. Bender KS, Rice MR, Fugate WH, Coates JD, Achenbach LA. Metabolic primers for detection of (Per)chlorate-reducing bacteria in the environment and phylogenetic analysis of cld gene sequences. Appl Environ Microbiol. 2004 Sep; 70(9):5651-8.
        View in: PubMed
      53. Coates JD, Achenbach LA. Microbial perchlorate reduction: rocket-fueled metabolism. Nat Rev Microbiol. 2004 Jul; 2(7):569-80.
        View in: PubMed
      54. Chakraborty R, Coates JD. Anaerobic degradation of monoaromatic hydrocarbons. Appl Microbiol Biotechnol. 2004 May; 64(4):437-46.
        View in: PubMed
      55. Coleman ML, Ader M, Chaudhuri S, Coates JD. Microbial isotopic fractionation of perchlorate chlorine. Appl Environ Microbiol. 2003 Aug; 69(8):4997-5000.
        View in: PubMed
      56. Coates JD, Chakraborty R, McInerney MJ. Anaerobic benzene biodegradation--a new era. Res Microbiol. 2002 Dec; 153(10):621-8.
        View in: PubMed
      57. Bender KS, O'Connor SM, Chakraborty R, Coates JD, Achenbach LA. Sequencing and transcriptional analysis of the chlorite dismutase gene of Dechloromonas agitata and its use as a metabolic probe. Appl Environ Microbiol. 2002 Oct; 68(10):4820-6.
        View in: PubMed
      58. Chaudhuri SK, O'Connor SM, Gustavson RL, Achenbach LA, Coates JD. Environmental factors that control microbial perchlorate reduction. Appl Environ Microbiol. 2002 Sep; 68(9):4425-30.
        View in: PubMed
      59. Lack JG, Chaudhuri SK, Kelly SD, Kemner KM, O'Connor SM, Coates JD. Immobilization of radionuclides and heavy metals through anaerobic bio-oxidation of Fe(II). Appl Environ Microbiol. 2002 Jun; 68(6):2704-10.
        View in: PubMed
      60. O'Connor SM, Coates JD. Universal immunoprobe for (per)chlorate-reducing bacteria. Appl Environ Microbiol. 2002 Jun; 68(6):3108-13.
        View in: PubMed
      61. Coates JD, Cole KA, Chakraborty R, O'Connor SM, Achenbach LA. Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration. Appl Environ Microbiol. 2002 May; 68(5):2445-52.
        View in: PubMed
      62. Lack JG, Chaudhuri SK, Chakraborty R, Achenbach LA, Coates JD. Anaerobic biooxidation of Fe(II) by Dechlorosoma suillum. Microb Ecol. 2002 May; 43(4):424-31.
        View in: PubMed
      63. Coates JD, Chakraborty R, Lack JG, O'Connor SM, Cole KA, Bender KS, Achenbach LA. Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas. Nature. 2001 Jun 28; 411(6841):1039-43.
        View in: PubMed
      64. Chaudhuri SK, Lack JG, Coates JD. Biogenic magnetite formation through anaerobic biooxidation of Fe(II). Appl Environ Microbiol. 2001 Jun; 67(6):2844-8.
        View in: PubMed
      65. Achenbach LA, Michaelidou U, Bruce RA, Fryman J, Coates JD. Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position. Int J Syst Evol Microbiol. 2001 Mar; 51(Pt 2):527-33.
        View in: PubMed
      66. Coates JD, Bhupathiraju VK, Achenbach LA, Mclnerney MJ, Lovley DR. Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers. Int J Syst Evol Microbiol. 2001 Mar; 51(Pt 2):581-8.
        View in: PubMed
      67. Coates JD, Anderson RT. Emerging techniques for anaerobic bioremediation of contaminated environments. Trends Biotechnol. 2000 Oct; 18(10):408-12.
        View in: PubMed
      68. Coates JD, Michaelidou U, Bruce RA, O'Connor SM, Crespi JN, Achenbach LA. Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria. Appl Environ Microbiol. 1999 Dec; 65(12):5234-41.
        View in: PubMed
      69. Coates JD, Ellis DJ, Gaw CV, Lovley DR. Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int J Syst Bacteriol. 1999 Oct; 49 Pt 4:1615-22.
        View in: PubMed
      70. Bruce RA, Achenbach LA, Coates JD. Reduction of (per)chlorate by a novel organism isolated from paper mill waste. Environ Microbiol. 1999 Aug; 1(4):319-29.
        View in: PubMed
      71. Lovley DR, Fraga JL, Coates JD, Blunt-Harris EL. Humics as an electron donor for anaerobic respiration. Environ Microbiol. 1999 Feb; 1(1):89-98.
        View in: PubMed
      72. Coates JD, Bruce RA, Haddock JD. Anoxic bioremediation of hydrocarbons. Nature. 1998 Dec 24-31; 396(6713):730.
        View in: PubMed
      73. Coates JD, Councell T, Ellis DJ, Lovley DR. Carbohydrate oxidation coupled to Fe(III) reduction, a novel form of anaerobic metabolism. Anaerobe. 1998 Dec; 4(6):277-82.
        View in: PubMed
      74. Coates JD, Ellis DJ, Blunt-Harris EL, Gaw CV, Roden EE, Lovley DR. Recovery of humic-reducing bacteria from a diversity of environments. Appl Environ Microbiol. 1998 Apr; 64(4):1504-9.
        View in: PubMed
      75. Newman DK, Kennedy EK, Coates JD, Ahmann D, Ellis DJ, Lovley DR, Morel FM. Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum sp. nov. Arch Microbiol. 1997 Nov; 168(5):380-8.
        View in: PubMed
      76. Coates JD, Woodward J, Allen J, Philp P, Lovley DR. Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor sediments. Appl Environ Microbiol. 1997 Sep; 63(9):3589-93.
        View in: PubMed
      77. Finster K, Coates JD, Liesack W, Pfennig N. Desulfuromonas thiophila sp. nov., a new obligately sulfur-reducing bacterium from anoxic freshwater sediment. Int J Syst Bacteriol. 1997 Jul; 47(3):754-8.
        View in: PubMed
      78. Caccavo F, Coates JD, Rossello-Mora RA, Ludwig W, Schleifer KH, Lovley DR, McInerney MJ. Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium. Arch Microbiol. 1996 Jun; 165(6):370-6.
        View in: PubMed
      79. Coates JD, Phillips EJ, Lonergan DJ, Jenter H, Lovley DR. Isolation of Geobacter species from diverse sedimentary environments. Appl Environ Microbiol. 1996 May; 62(5):1531-6.
        View in: PubMed
      80. Lonergan DJ, Jenter HL, Coates JD, Phillips EJ, Schmidt TM, Lovley DR. Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J Bacteriol. 1996 Apr; 178(8):2402-8.
        View in: PubMed
      81. Coates JD, Anderson RT, Lovley DR. Oxidation of Polycyclic Aromatic Hydrocarbons under Sulfate-Reducing Conditions. Appl Environ Microbiol. 1996 Mar; 62(3):1099-101.
        View in: PubMed
      82. Coates JD, Lonergan DJ, Philips EJ, Jenter H, Lovley DR. Desulfuromonas palmitatis sp. nov., a marine dissimilatory Fe(III) reducer that can oxidize long-chain fatty acids. Arch Microbiol. 1995 Dec; 164(6):406-13.
        View in: PubMed
      83. Lovley DR, Coates JD, Woodward JC, Phillips E. Benzene oxidation coupled to sulfate reduction. Appl Environ Microbiol. 1995 Mar; 61(3):953-8.
        View in: PubMed
      Back to TOP