Sign in to edit your profile (add interests, overview, photo, etc.)
    LBNL Profiles Metrics
    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Kimbrel, Jeffrey

    TitleBiologist Postdoc Fellow
    SchoolLawrence Berkeley National Lab
    DepartmentPhysical Biosciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-7487

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Woo HL, Ballor NR, Hazen TC, Fortney JL, Simmons B, Davenport KW, Goodwin L, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, Jansson J, Kimbrel J, DeAngelis KM. Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2. Stand Genomic Sci. 2014; 9:19.
        View in: PubMed
      2. Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, Knight R, Gilbert JA, Jansson JK. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. ISME J. 2014 Jul; 8(7):1464-75.
        View in: PubMed
      3. Kimbrel JA, Chang J, Arp DJ, Sayavedra-Soto LA. The Draft Genome Sequence of Nocardioides sp. Strain CF8 Reveals the Scope of Its Metabolic Capabilities. Genome Announc. 2013; 1(4).
        View in: PubMed
      4. Di Y, Emerson SC, Schafer DW, Kimbrel JA, Chang JH. Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data. Stat Appl Genet Mol Biol. 2013 Mar; 12(1):49-70.
        View in: PubMed
      5. Fox SE, Preece J, Kimbrel JA, Marchini GL, Sage A, Youens-Clark K, Cruzan MB, Jaiswal P. Sequencing and de novo transcriptome assembly of Brachypodium sylvaticum (Poaceae). Appl Plant Sci. 2013 Mar; 1(3).
        View in: PubMed
      6. Kimbrel JA, Thomas WJ, Jiang Y, Creason AL, Thireault CA, Sachs JL, Chang JH. Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum. PLoS Pathog. 2013 Feb; 9(2):e1003204.
        View in: PubMed
      7. Kimbrel JA, Di Y, Cumbie JS, Chang JH. RNA-Seq for Plant Pathogenic Bacteria. Genes (Basel). 2011; 2(4):689-705.
        View in: PubMed
      8. Cumbie JS, Kimbrel JA, Di Y, Schafer DW, Wilhelm LJ, Fox SE, Sullivan CM, Curzon AD, Carrington JC, Mockler TC, Chang JH. GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences. PLoS One. 2011; 6(10):e25279.
        View in: PubMed
      9. Sayavedra-Soto LA, Hamamura N, Liu CW, Kimbrel JA, Chang JH, Arp DJ. The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family. Environ Microbiol Rep. 2011 Jun; 3(3):390-6.
        View in: PubMed
      10. Kimbrel JA, Givan SA, Temple TN, Johnson KB, Chang JH. Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics. Mol Plant Pathol. 2011 Aug; 12(6):580-94.
        View in: PubMed
      11. Kimbrel JA, Givan SA, Halgren AB, Creason AL, Mills DI, Banowetz GM, Armstrong DJ, Chang JH. An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6. BMC Genomics. 2010; 11:522.
        View in: PubMed
      12. Cohu CM, Abdel-Ghany SE, Gogolin Reynolds KA, Onofrio AM, Bodecker JR, Kimbrel JA, Niyogi KK, Pilon M. Copper delivery by the copper chaperone for chloroplast and cytosolic copper/zinc-superoxide dismutases: regulation and unexpected phenotypes in an Arabidopsis mutant. Mol Plant. 2009 Nov; 2(6):1336-50.
        View in: PubMed
      13. Thomas WJ, Thireault CA, Kimbrel JA, Chang JH. Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0-1. Plant J. 2009 Dec; 60(5):919-28.
        View in: PubMed
      Back to TOP