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    22837 Publications
    3073 Total Profiles
    23 Edited Profiles

    Crooks, Gavin

    TitlePhysicist Senior Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentPhysical Biosciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone415/729-4974

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Iyer-Biswas S, Wright CS, Henry JT, Lo K, Burov S, Lin Y, Crooks GE, Crosson S, Dinner AR, Scherer NF. Scaling laws governing stochastic growth and division of single bacterial cells. Proc Natl Acad Sci U S A. 2014 Nov 11; 111(45):15912-7.
        View in: PubMed
      2. Iyer-Biswas S, Crooks GE, Scherer NF, Dinner AR. Universality in stochastic exponential growth. Phys Rev Lett. 2014 Jul 11; 113(2):028101.
        View in: PubMed
      3. Sivak DA, Chodera JD, Crooks GE. Time step rescaling recovers continuous-time dynamical properties for discrete-time langevin integration of nonequilibrium systems. J Phys Chem B. 2014 Jun 19; 118(24):6466-74.
        View in: PubMed
      4. Zulkowski PR, Sivak DA, Crooks GE, DeWeese MR. Geometry of thermodynamic control. Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Oct; 86(4 Pt 1):041148.
        View in: PubMed
      5. Still S, Sivak DA, Bell AJ, Crooks GE. Thermodynamics of prediction. Phys Rev Lett. 2012 Sep 21; 109(12):120604.
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      6. Sivak DA, Crooks GE. Thermodynamic metrics and optimal paths. Phys Rev Lett. 2012 May 11; 108(19):190602.
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      7. Sivak DA, Crooks GE. Near-equilibrium measurements of nonequilibrium free energy. Phys Rev Lett. 2012 Apr 13; 108(15):150601.
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      8. Nilmeier JP, Crooks GE, Minh DD, Chodera JD. Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation. Proc Natl Acad Sci U S A. 2011 Nov 8; 108(45):E1009-18.
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      9. Greenfield D, McEvoy AL, Shroff H, Crooks GE, Wingreen NS, Betzig E, Liphardt J. Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. PLoS Biol. 2009 Jun 16; 7(6):e1000137.
        View in: PubMed
      10. Crooks GE. Comment regarding "On the Crooks fluctuation theorem and the Jarzynski equality" [J. Chem. Phys. 129, 091101 (2008)] and "Nonequilibrium fluctuation-dissipation theorem of Brownian dynamics" [J. Chem. Phys. 129, 144113 (2008)]. J Chem Phys. 2009 Mar 14; 130(10):107101; discussion 107102.
        View in: PubMed
      11. Feng EH, Crooks GE. Far-from-equilibrium measurements of thermodynamic length. Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan; 79(1 Pt 1):012104.
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      12. Feng EH, Crooks GE. Length of time's arrow. Phys Rev Lett. 2008 Aug 29; 101(9):090602.
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      13. Maragakis P, Ritort F, Bustamante C, Karplus M, Crooks GE. Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise. J Chem Phys. 2008 Jul 14; 129(2):024102.
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      14. Crooks GE. Measuring thermodynamic length. Phys Rev Lett. 2007 Sep 7; 99(10):100602.
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      15. Crooks GE. Beyond Boltzmann-Gibbs statistics: maximum entropy hyperensembles out of equilibrium. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr; 75(4 Pt 1):041119.
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      16. Crooks GE, Jarzynski C. Work distribution for the adiabatic compression of a dilute and interacting classical gas. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb; 75(2 Pt 1):021116.
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      17. Casbon JA, Crooks GE, Saqi MA. A high level interface to SCOP and ASTRAL implemented in python. BMC Bioinformatics. 2006; 7:10.
        View in: PubMed
      18. Crooks GE, Green RE, Brenner SE. Pairwise alignment incorporating dipeptide covariation. Bioinformatics. 2005 Oct 1; 21(19):3704-10.
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      19. Price GA, Crooks GE, Green RE, Brenner SE. Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap. Bioinformatics. 2005 Oct 15; 21(20):3824-31.
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      20. Zachariah MA, Crooks GE, Holbrook SR, Brenner SE. A generalized affine gap model significantly improves protein sequence alignment accuracy. Proteins. 2005 Feb 1; 58(2):329-38.
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      21. Crooks GE, Wolfe J, Brenner SE. Measurements of protein sequence-structure correlations. Proteins. 2004 Dec 1; 57(4):804-10.
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      22. Crooks GE, Brenner SE. An alternative model of amino acid replacement. Bioinformatics. 2005 Apr 1; 21(7):975-80.
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      23. Trepagnier EH, Jarzynski C, Ritort F, Crooks GE, Bustamante CJ, Liphardt J. Experimental test of Hatano and Sasa's nonequilibrium steady-state equality. Proc Natl Acad Sci U S A. 2004 Oct 19; 101(42):15038-41.
        View in: PubMed
      24. Crooks GE, Hon G, Chandonia JM, Brenner SE. WebLogo: a sequence logo generator. Genome Res. 2004 Jun; 14(6):1188-90.
        View in: PubMed
      25. Crooks GE, Brenner SE. Protein secondary structure: entropy, correlations and prediction. Bioinformatics. 2004 Jul 10; 20(10):1603-11.
        View in: PubMed
      26. Crooks GE, Chandler D. Efficient transition path sampling for nonequilibrium stochastic dynamics. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Aug; 64(2 Pt 2):026109.
        View in: PubMed
      27. Crooks GE, Ostrovsky B, Bar-Yam Y. Mesostructure of polymer collapse and fractal smoothing. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Oct; 60(4 Pt B):4559-63.
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      28. Crooks GE. Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Sep; 60(3):2721-6.
        View in: PubMed
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