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    Brodie, Eoin

    TitleGeological Senior Scientist
    SchoolLawrence Berkeley National Lab
    DepartmentClimate & Ecosystems
    Address1 Cyclotron Road
    Berkeley CA 94720
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Obadia B, Güvener ZT, Zhang V, Ceja-Navarro JA, Brodie E, Ja WW, Ludington WB. Probabilistic Invasion Underlies Natural Gut Microbiome Stability. Curr Biol. 2017 Jul 10; 27(13):1999-2006.e8. PMID: 28625783.
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      2. Varadharajan C, Beller HR, Bill M, Brodie E, Conrad ME, Han R, Irwin C, Larsen JT, Lim HC, Molins S, Steefel CI, van Hise A, Yang L, Nico PS. Reoxidation of Chromium(III) Products Formed under Different Biogeochemical Regimes. Environ Sci Technol. 2017 May 02; 51(9):4918-4927. PMID: 28365989.
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      3. Yabusaki SB, Wilkins MJ, Fang Y, Williams KH, Arora B, Bargar J, Beller HR, Bouskill NJ, Brodie E, Christensen JN, Conrad ME, Danczak RE, King E, Soltanian MR, Spycher NF, Steefel CI, Tokunaga TK, Versteeg R, Waichler SR, Wainwright HM. Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain. Environ Sci Technol. 2017 Mar 21; 51(6):3307-3317. PMID: 28218533.
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      4. Jewell TN, Karaoz U, Bill M, Chakraborty R, Brodie E, Williams KH, Beller HR. Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer. Front Microbiol. 2017; 8:40. PMID: 28179898.
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      5. Ben Guerrero E, Soria M, Salvador R, Ceja-Navarro JA, Campos E, Brodie E, Talia P. Effect of Different Lignocellulosic Diets on Bacterial Microbiota and Hydrolytic Enzyme Activities in the Gut of the Cotton Boll Weevil (Anthonomus grandis). Front Microbiol. 2016; 7:2093. PMID: 28082962.
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      6. Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie E, Williams KH, Hubbard SS, Banfield JF. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system. Nat Commun. 2016 Oct 24; 7:13219. PMID: 27774985.
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      7. Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie E, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. ISME J. 2016 Oct 14. PMID: 27740610.
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      8. Blaser MJ, Cardon ZG, Cho MK, Dangl JL, Donohue TJ, Green JL, Knight R, Maxon ME, Northen TR, Pollard KS, Brodie E. Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges. MBio. 2016 May 13; 7(3). PMID: 27178263; PMCID: PMC4895116.
      9. Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie E, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 2016 May; 97(5):1307-18. PMID: 27349106.
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      10. Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie E. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Front Microbiol. 2016; 7:525. PMID: 27148214; PMCID: PMC4837414.
      11. Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie E. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Front Microbiol. 2016; 7:323. PMID: 27014243; PMCID: PMC4791749.
      12. Jewell TN, Karaoz U, Brodie E, Williams KH, Beller HR. Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer. ISME J. 2016 Sep; 10(9):2106-17. PMID: 26943628.
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      13. Couradeau E, Karaoz U, Lim HC, Nunes da Rocha U, Northen T, Brodie E, Garcia-Pichel F. Bacteria increase arid-land soil surface temperature through the production of sunscreens. Nat Commun. 2016 Jan 20; 7:10373. PMID: 26785770; PMCID: PMC4735820.
      14. Alivisatos AP, Blaser MJ, Brodie E, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science. 2015 Oct 30; 350(6260):507-8. PMID: 26511287.
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      15. Baran R, Brodie E, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015 Sep 22; 6:8289. PMID: 26392107; PMCID: PMC4595634.
      16. Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie E, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. MBio. 2015 Aug 04; 6(4):e00746. PMID: 26242625; PMCID: PMC4526712.
      17. Vega FE, Brown SM, Chen H, Shen E, Nair MB, Ceja-Navarro JA, Brodie E, Infante F, Dowd PF, Pain A. Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei. Sci Rep. 2015 Jul 31; 5:12525. PMID: 26228545; PMCID: PMC4521149.
      18. Ceja-Navarro JA, Vega FE, Karaoz U, Hao Z, Jenkins S, Lim HC, Kosina P, Infante F, Northen TR, Brodie E. Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee. Nat Commun. 2015 Jul 14; 6:7618. PMID: 26173063; PMCID: PMC4510693.
      19. Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie E. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Front Microbiol. 2015; 6:277. PMID: 25926821; PMCID: PMC4396413.
      20. Srinivasan R, Karaoz U, Volegova M, MacKichan J, Kato-Maeda M, Miller S, Nadarajan R, Brodie E, Lynch SV. Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens. PLoS One. 2015; 10(2):e0117617. PMID: 25658760; PMCID: PMC4319838.
      21. Berlemont R, Allison SD, Weihe C, Lu Y, Brodie E, Martiny JB, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639. PMID: 25505459; PMCID: PMC4243572.
      22. Beller HR, Yang L, Varadharajan C, Han R, Lim HC, Karaoz U, Molins S, Marcus MA, Brodie E, Steefel CI, Nico PS. Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products. Environ Sci Technol. 2014 Sep 16; 48(18):10699-706. PMID: 25084058.
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      23. Closek CJ, Sunagawa S, DeSalvo MK, Piceno YM, DeSantis TZ, Brodie E, Weber MX, Voolstra CR, Andersen GL, Medina M. Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. ISME J. 2014 Dec; 8(12):2411-22. PMID: 24950107; PMCID: PMC4260706.
      24. Ganz HH, Turner WC, Brodie E, Kusters M, Shi Y, Sibanda H, Torok T, Getz WM. Interactions between Bacillus anthracis and plants may promote anthrax transmission. PLoS Negl Trop Dis. 2014 Jun; 8(6):e2903. PMID: 24901846; PMCID: PMC4046938.
      25. Wells GF, Wu CH, Piceno YM, Eggleston B, Brodie E, Desantis TZ, Andersen GL, Hazen TC, Francis CA, Criddle CS. Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes. Appl Microbiol Biotechnol. 2014 May; 98(10):4723-36. PMID: 24553968.
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      26. Ma Y, Madupu R, Karaoz U, Nossa CW, Yang L, Yooseph S, Yachimski PS, Brodie E, Nelson KE, Pei Z. Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets. J Virol. 2014 May; 88(9):4786-97. PMID: 24522917; PMCID: PMC3993818.
      27. Briggs BR, Brodie E, Tom LM, Dong H, Jiang H, Huang Q, Wang S, Hou W, Wu G, Huang L, Hedlund BP, Zhang C, Dijkstra P, Hungate BA. Seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Province, China. Environ Microbiol. 2014 Jun; 16(6):1579-91. PMID: 24148100.
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      28. Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie E. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282. PMID: 24069019; PMCID: PMC3779933.
      29. Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie E. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. ISME J. 2014 Jan; 8(1):6-18. PMID: 23985746; PMCID: PMC3869013.
      30. Close HG, Shah SR, Ingalls AE, Diefendorf AF, Brodie E, Hansman RL, Freeman KH, Aluwihare LI, Pearson A. Export of submicron particulate organic matter to mesopelagic depth in an oligotrophic gyre. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12565-70. PMID: 23858459; PMCID: PMC3732979.
      31. Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie E, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J. 2013 Nov; 7(11):2178-91. PMID: 23739051; PMCID: PMC3806265.
      32. Lau SC, Zhang R, Brodie E, Piceno YM, Andersen G, Liu WT. Biogeography of bacterioplankton in the tropical seawaters of Singapore. FEMS Microbiol Ecol. 2013 May; 84(2):259-69. PMID: 23237658.
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      33. Bouskill NJ, Lim HC, Borglin S, Salve R, Wood TE, Silver WL, Brodie E. Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought. ISME J. 2013 Feb; 7(2):384-94. PMID: 23151641; PMCID: PMC3554394.
      34. Bouskill NJ, Tang J, Riley WJ, Brodie E. Trait-based representation of biological nitrification: model development, testing, and predicted community composition. Front Microbiol. 2012; 3:364. PMID: 23087681; PMCID: PMC3475126.
      35. Lynch SV, Goldfarb KC, Wild YK, Kong W, De Lisle RC, Brodie E. Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota. Gut Microbes. 2013 Jan-Feb; 4(1):41-7. PMID: 23060053; PMCID: PMC3555885.
      36. Beller HR, Han R, Karaoz U, Lim H, Brodie E. Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1. Appl Environ Microbiol. 2013 Jan; 79(1):63-73. PMID: 23064329; PMCID: PMC3536105.
      37. Hayden HL, Mele PM, Bougoure DS, Allan CY, Norng S, Piceno YM, Brodie E, Desantis TZ, Andersen GL, Williams AL, Hovenden MJ. Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil. Environ Microbiol. 2012 Dec; 14(12):3081-96. PMID: 23039205.
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      38. Placella SA, Brodie E, Firestone MK. Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proc Natl Acad Sci U S A. 2012 Jul 03; 109(27):10931-6. PMID: 22715291; PMCID: PMC3390866.
      39. Reith F, Brugger J, Zammit CM, Gregg AL, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie E, Lu Z, He Z, Zhou J, Wakelin SA. Influence of geogenic factors on microbial communities in metallogenic Australian soils. ISME J. 2012 Nov; 6(11):2107-18. PMID: 22673626; PMCID: PMC3475370.
      40. Brisson VL, West KA, Lee PK, Tringe SG, Brodie E, Alvarez-Cohen L. Metagenomic analysis of a stable trichloroethene-degrading microbial community. ISME J. 2012 Sep; 6(9):1702-14. PMID: 22378537; PMCID: PMC3498913.
      41. Godoy-Vitorino F, Leal SJ, Díaz WA, Rosales J, Goldfarb KC, García-Amado MA, Michelangeli F, Brodie E, Domínguez-Bello MG. Differences in crop bacterial community structure between hoatzins from different geographical locations. Res Microbiol. 2012 Apr; 163(3):211-20. PMID: 22313738.
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      42. Lee PK, Warnecke F, Brodie E, Macbeth TW, Conrad ME, Andersen GL, Alvarez-Cohen L. Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site. Environ Sci Technol. 2012 Jan 17; 46(2):1044-54. PMID: 22091783; PMCID: PMC3461955.
      43. Sridevi G, Minocha R, Turlapati SA, Goldfarb KC, Brodie E, Tisa LS, Minocha SC. Soil bacterial communities of a calcium-supplemented and a reference watershed at the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA. FEMS Microbiol Ecol. 2012 Mar; 79(3):728-40. PMID: 22098093.
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      44. Mayali X, Weber PK, Brodie E, Mabery S, Hoeprich PD, Pett-Ridge J. High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. ISME J. 2012 Jun; 6(6):1210-21. PMID: 22158395; PMCID: PMC3358021.
      45. Wakelin SA, Anand RR, Reith F, Gregg AL, Noble RR, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie E. Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia. FEMS Microbiol Ecol. 2012 Feb; 79(2):298-311. PMID: 22092956.
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      46. Godoy-Vitorino F, Goldfarb KC, Karaoz U, Leal S, Garcia-Amado MA, Hugenholtz P, Tringe SG, Brodie E, Dominguez-Bello MG. Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J. 2012 Mar; 6(3):531-41. PMID: 21938024; PMCID: PMC3280141.
      47. Brodie E, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC. Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater. Chemosphere. 2011 Oct; 85(4):660-5. PMID: 21872904.
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      48. Briggs BR, Pohlman JW, Torres M, Riedel M, Brodie E, Colwell FS. Macroscopic biofilms in fracture-dominated sediment that anaerobically oxidize methane. Appl Environ Microbiol. 2011 Oct; 77(19):6780-7. PMID: 21821755; PMCID: PMC3187087.
      49. DeAngelis KM, Wu CH, Beller HR, Brodie E, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol. 2011 Sep; 77(18):6313-22. PMID: 21764955; PMCID: PMC3187179.
      50. Banning NC, Gleeson DB, Grigg AH, Grant CD, Andersen GL, Brodie E, Murphy DV. Soil microbial community successional patterns during forest ecosystem restoration. Appl Environ Microbiol. 2011 Sep; 77(17):6158-64. PMID: 21724890; PMCID: PMC3165429.
      51. Kelly LC, Cockell CS, Herrera-Belaroussi A, Piceno Y, Andersen G, DeSantis T, Brodie E, Thorsteinsson T, Marteinsson V, Poly F, LeRoux X. Bacterial diversity of terrestrial crystalline volcanic rocks, Iceland. Microb Ecol. 2011 Jul; 62(1):69-79. PMID: 21584756.
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      52. Mohanty SR, Kollah B, Brodie E, Hazen TC, Roden EE. 16S rRNA gene microarray analysis of microbial communities in ethanol-stimulated subsurface sediment. Microbes Environ. 2011; 26(3):261-5. PMID: 21558677.
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      53. Goldfarb KC, Karaoz U, Hanson CA, Santee CA, Bradford MA, Treseder KK, Wallenstein MD, Brodie E. Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front Microbiol. 2011; 2:94. PMID: 21833332; PMCID: PMC3153052.
      54. DeSantis TZ, Keller K, Karaoz U, Alekseyenko AV, Singh NN, Brodie E, Pei Z, Andersen GL, Larsen N. Simrank: Rapid and sensitive general-purpose k-mer search tool. BMC Ecol. 2011 Apr 27; 11:11. PMID: 21524302; PMCID: PMC3097142.
      55. Paszczynski AJ, Paidisetti R, Johnson AK, Crawford RL, Colwell FS, Green T, Delwiche M, Lee H, Newby D, Brodie E, Conrad M. Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase. Biodegradation. 2011 Nov; 22(6):1045-59. PMID: 21360114.
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      56. Lee PK, Cheng D, Hu P, West KA, Dick GJ, Brodie E, Andersen GL, Zinder SH, He J, Alvarez-Cohen L. Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. ISME J. 2011 Jun; 5(6):1014-24. PMID: 21228894; PMCID: PMC3131851.
      57. Huang YJ, Nelson CE, Brodie E, Desantis TZ, Baek MS, Liu J, Woyke T, Allgaier M, Bristow J, Wiener-Kronish JP, Sutherland ER, King TS, Icitovic N, Martin RJ, Calhoun WJ, Castro M, Denlinger LC, Dimango E, Kraft M, Peters SP, Wasserman SI, Wechsler ME, Boushey HA, Lynch SV. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol. 2011 Feb; 127(2):372-381.e1-3. PMID: 21194740; PMCID: PMC3037020.
      58. Chourey K, Jansson J, VerBerkmoes N, Shah M, Chavarria KL, Tom LM, Brodie E, Hettich RL. Direct cellular lysis/protein extraction protocol for soil metaproteomics. J Proteome Res. 2010 Dec 03; 9(12):6615-22. PMID: 20954746.
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      59. Baran R, Bowen BP, Bouskill NJ, Brodie E, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Anal Chem. 2010 Nov 01; 82(21):9034-42. PMID: 20945921.
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      60. Maldonado-Contreras A, Goldfarb KC, Godoy-Vitorino F, Karaoz U, Contreras M, Blaser MJ, Brodie E, Dominguez-Bello MG. Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J. 2011 Apr; 5(4):574-9. PMID: 20927139; PMCID: PMC3105737.
      61. Han R, Geller JT, Yang L, Brodie E, Chakraborty R, Larsen JT, Beller HR. Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad. Environ Sci Technol. 2010 Oct 01; 44(19):7491-7. PMID: 20822129.
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      62. Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, Brodie E, Malamud D, Poles MA, Pei Z. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol. 2010 Sep 07; 16(33):4135-44. PMID: 20806429; PMCID: PMC2932916.
      63. Fujimura KE, Johnson CC, Ownby DR, Cox MJ, Brodie E, Havstad SL, Zoratti EM, Woodcroft KJ, Bobbitt KR, Wegienka G, Boushey HA, Lynch SV. Man's best friend? The effect of pet ownership on house dust microbial communities. J Allergy Clin Immunol. 2010 Aug; 126(2):410-2, 412.e1-3. PMID: 20633927; PMCID: PMC2956425.
      64. Wu CH, Sercu B, Van de Werfhorst LC, Wong J, DeSantis TZ, Brodie E, Hazen TC, Holden PA, Andersen GL. Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. PLoS One. 2010 Jun 23; 5(6):e11285. PMID: 20585654; PMCID: PMC2890573.
      65. Cox MJ, Allgaier M, Taylor B, Baek MS, Huang YJ, Daly RA, Karaoz U, Andersen GL, Brown R, Fujimura KE, Wu B, Tran D, Koff J, Kleinhenz ME, Nielson D, Brodie E, Lynch SV. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One. 2010 Jun 23; 5(6):e11044. PMID: 20585638; PMCID: PMC2890402.
      66. Lemon KP, Klepac-Ceraj V, Schiffer HK, Brodie E, Lynch SV, Kolter R. Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio. 2010 Jun 22; 1(3). PMID: 20802827; PMCID: PMC2925076.
      67. Conrad ME, Brodie E, Radtke CW, Bill M, Delwiche ME, Lee MH, Swift DL, Colwell FS. Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater. Environ Sci Technol. 2010 Jun 15; 44(12):4697-704. PMID: 20476753.
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      68. Pei AY, Oberdorf WE, Nossa CW, Agarwal A, Chokshi P, Gerz EA, Jin Z, Lee P, Yang L, Poles M, Brown SM, Sotero S, Desantis T, Brodie E, Nelson K, Pei Z. Diversity of 16S rRNA genes within individual prokaryotic genomes. Appl Environ Microbiol. 2010 Jun; 76(12):3886-97. PMID: 20418441; PMCID: PMC2893482.
      69. Klepac-Ceraj V, Lemon KP, Martin TR, Allgaier M, Kembel SW, Knapp AA, Lory S, Brodie E, Lynch SV, Bohannan BJ, Green JL, Maurer BA, Kolter R. Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol. 2010 May; 12(5):1293-303. PMID: 20192960.
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      70. Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie E, Desantis TZ, Andersen GL, van Veen JA, Kowalchuk GA. Microbial secondary succession in a chronosequence of chalk grasslands. ISME J. 2010 May; 4(5):711-5. PMID: 20164861.
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      71. Godoy-Vitorino F, Goldfarb KC, Brodie E, Garcia-Amado MA, Michelangeli F, Domínguez-Bello MG. Developmental microbial ecology of the crop of the folivorous hoatzin. ISME J. 2010 May; 4(5):611-20. PMID: 20130656.
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      72. Huang YJ, Kim E, Cox MJ, Brodie E, Brown R, Wiener-Kronish JP, Lynch SV. A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS. 2010 Feb; 14(1):9-59. PMID: 20141328; PMCID: PMC3116451.
      73. Cox MJ, Huang YJ, Fujimura KE, Liu JT, McKean M, Boushey HA, Segal MR, Brodie E, Cabana MD, Lynch SV. Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One. 2010 Jan 18; 5(1):e8745. PMID: 20090909; PMCID: PMC2807455.
      74. Fan C, Lee PK, Ng WJ, Alvarez-Cohen L, Brodie E, Andersen GL, He J. Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs). Appl Microbiol Biotechnol. 2009 Nov; 85(1):185-95. PMID: 19727707; PMCID: PMC2765652.
      75. Ivanov II, Atarashi K, Manel N, Brodie E, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell. 2009 Oct 30; 139(3):485-98. PMID: 19836068; PMCID: PMC2796826.
      76. Cruz-Martínez K, Suttle KB, Brodie E, Power ME, Andersen GL, Banfield JF. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J. 2009 Jun; 3(6):738-44. PMID: 19279669.
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      77. Shawkey MD, Firestone MK, Brodie E, Beissinger SR. Avian incubation inhibits growth and diversification of bacterial assemblages on eggs. PLoS One. 2009; 4(2):e4522. PMID: 19225566; PMCID: PMC2639702.
      78. Sunagawa S, DeSantis TZ, Piceno YM, Brodie E, DeSalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J. 2009 May; 3(5):512-21. PMID: 19129866.
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      79. Tokunaga TK, Wan J, Kim Y, Daly RA, Brodie E, Hazen TC, Herman D, Firestone MK. Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment. Environ Sci Technol. 2008 Dec 01; 42(23):8901-7. PMID: 19192816.
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      80. Yergeau E, Schoondermark-Stolk SA, Brodie E, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA. Environmental microarray analyses of Antarctic soil microbial communities. ISME J. 2009 Mar; 3(3):340-51. PMID: 19020556.
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