Sign in to edit your profile (add interests, overview, photo, etc.)
    LBNL Profiles Metrics
    22822 Publications
    3073 Total Profiles
    18 Edited Profiles

    Brodie, Eoin

    TitleGeological Staff Scientist
    SchoolLawrence Berkeley National Lab
    DepartmentEarth Sciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-6584

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA. MICROBIOME. A unified initiative to harness Earth's microbiomes. Science. 2015 Oct 30; 350(6260):507-8.
        View in: PubMed
      2. Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015; 6:8289.
        View in: PubMed
      3. Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. MBio. 2015; 6(4).
        View in: PubMed
      4. Vega FE, Brown SM, Chen H, Shen E, Nair MB, Ceja-Navarro JA, Brodie EL, Infante F, Dowd PF, Pain A. Draft genome of the most devastating insect pest of coffee worldwide: the coffee berry borer, Hypothenemus hampei. Sci Rep. 2015; 5:12525.
        View in: PubMed
      5. Ceja-Navarro JA, Vega FE, Karaoz U, Hao Z, Jenkins S, Lim HC, Kosina P, Infante F, Northen TR, Brodie EL. Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee. Nat Commun. 2015; 6:7618.
        View in: PubMed
      6. Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Front Microbiol. 2015; 6:277.
        View in: PubMed
      7. Srinivasan R, Karaoz U, Volegova M, MacKichan J, Kato-Maeda M, Miller S, Nadarajan R, Brodie EL, Lynch SV. Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens. PLoS One. 2015; 10(2):e0117617.
        View in: PubMed
      8. Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639.
        View in: PubMed
      9. Beller HR, Yang L, Varadharajan C, Han R, Lim HC, Karaoz U, Molins S, Marcus MA, Brodie EL, Steefel CI, Nico PS. Divergent Aquifer Biogeochemical Systems Converge on Similar and Unexpected Cr(VI) Reduction Products. Environ Sci Technol. 2014 Sep 16; 48(18):10699-706.
        View in: PubMed
      10. Closek CJ, Sunagawa S, DeSalvo MK, Piceno YM, DeSantis TZ, Brodie EL, Weber MX, Voolstra CR, Andersen GL, Medina M. Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. ISME J. 2014 Dec; 8(12):2411-22.
        View in: PubMed
      11. Ganz HH, Turner WC, Brodie EL, Kusters M, Shi Y, Sibanda H, Torok T, Getz WM. Interactions between Bacillus anthracis and Plants May Promote Anthrax Transmission. PLoS Negl Trop Dis. 2014 Jun; 8(6):e2903.
        View in: PubMed
      12. Wells GF, Wu CH, Piceno YM, Eggleston B, Brodie EL, Desantis TZ, Andersen GL, Hazen TC, Francis CA, Criddle CS. Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes. Appl Microbiol Biotechnol. 2014 May; 98(10):4723-36.
        View in: PubMed
      13. Ma Y, Madupu R, Karaoz U, Nossa CW, Yang L, Yooseph S, Yachimski PS, Brodie EL, Nelson KE, Pei Z. Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets. J Virol. 2014 May; 88(9):4786-97.
        View in: PubMed
      14. Briggs BR, Brodie EL, Tom LM, Dong H, Jiang H, Huang Q, Wang S, Hou W, Wu G, Huang L, Hedlund BP, Zhang C, Dijkstra P, Hungate BA. Seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Province, China. Environ Microbiol. 2014 Jun; 16(6):1579-91.
        View in: PubMed
      15. Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie EL. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282.
        View in: PubMed
      16. Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie EL. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. ISME J. 2014 Jan; 8(1):6-18.
        View in: PubMed
      17. Close HG, Shah SR, Ingalls AE, Diefendorf AF, Brodie EL, Hansman RL, Freeman KH, Aluwihare LI, Pearson A. Export of submicron particulate organic matter to mesopelagic depth in an oligotrophic gyre. Proc Natl Acad Sci U S A. 2013 Jul 30; 110(31):12565-70.
        View in: PubMed
      18. Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J. 2013 Nov; 7(11):2178-91.
        View in: PubMed
      19. Lau SC, Zhang R, Brodie EL, Piceno YM, Andersen G, Liu WT. Biogeography of bacterioplankton in the tropical seawaters of Singapore. FEMS Microbiol Ecol. 2013 May; 84(2):259-69.
        View in: PubMed
      20. Bouskill NJ, Lim HC, Borglin S, Salve R, Wood TE, Silver WL, Brodie EL. Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought. ISME J. 2013 Feb; 7(2):384-94.
        View in: PubMed
      21. Bouskill NJ, Tang J, Riley WJ, Brodie EL. Trait-based representation of biological nitrification: model development, testing, and predicted community composition. Front Microbiol. 2012; 3:364.
        View in: PubMed
      22. Lynch SV, Goldfarb KC, Wild YK, Kong W, De Lisle RC, Brodie EL. Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota. Gut Microbes. 2013 Jan-Feb; 4(1):41-7.
        View in: PubMed
      23. Beller HR, Han R, Karaoz U, Lim H, Brodie EL. Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1. Appl Environ Microbiol. 2013 Jan; 79(1):63-73.
        View in: PubMed
      24. Hayden HL, Mele PM, Bougoure DS, Allan CY, Norng S, Piceno YM, Brodie EL, Desantis TZ, Andersen GL, Williams AL, Hovenden MJ. Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil. Environ Microbiol. 2012 Dec; 14(12):3081-96.
        View in: PubMed
      25. Placella SA, Brodie EL, Firestone MK. Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proc Natl Acad Sci U S A. 2012 Jul 3; 109(27):10931-6.
        View in: PubMed
      26. Reith F, Brugger J, Zammit CM, Gregg AL, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie EL, Lu Z, He Z, Zhou J, Wakelin SA. Influence of geogenic factors on microbial communities in metallogenic Australian soils. ISME J. 2012 Nov; 6(11):2107-18.
        View in: PubMed
      27. Brisson VL, West KA, Lee PK, Tringe SG, Brodie EL, Alvarez-Cohen L. Metagenomic analysis of a stable trichloroethene-degrading microbial community. ISME J. 2012 Sep; 6(9):1702-14.
        View in: PubMed
      28. Godoy-Vitorino F, Leal SJ, Díaz WA, Rosales J, Goldfarb KC, García-Amado MA, Michelangeli F, Brodie EL, Domínguez-Bello MG. Differences in crop bacterial community structure between hoatzins from different geographical locations. Res Microbiol. 2012 Apr; 163(3):211-20.
        View in: PubMed
      29. Lee PK, Warnecke F, Brodie EL, Macbeth TW, Conrad ME, Andersen GL, Alvarez-Cohen L. Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site. Environ Sci Technol. 2012 Jan 17; 46(2):1044-54.
        View in: PubMed
      30. Sridevi G, Minocha R, Turlapati SA, Goldfarb KC, Brodie EL, Tisa LS, Minocha SC. Soil bacterial communities of a calcium-supplemented and a reference watershed at the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA. FEMS Microbiol Ecol. 2012 Mar; 79(3):728-40.
        View in: PubMed
      31. Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich PD, Pett-Ridge J. High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. ISME J. 2012 Jun; 6(6):1210-21.
        View in: PubMed
      32. Wakelin SA, Anand RR, Reith F, Gregg AL, Noble RR, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie EL. Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia. FEMS Microbiol Ecol. 2012 Feb; 79(2):298-311.
        View in: PubMed
      33. Godoy-Vitorino F, Goldfarb KC, Karaoz U, Leal S, Garcia-Amado MA, Hugenholtz P, Tringe SG, Brodie EL, Dominguez-Bello MG. Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J. 2012 Mar; 6(3):531-41.
        View in: PubMed
      34. Brodie EL, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC. Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater. Chemosphere. 2011 Oct; 85(4):660-5.
        View in: PubMed
      35. Briggs BR, Pohlman JW, Torres M, Riedel M, Brodie EL, Colwell FS. Macroscopic biofilms in fracture-dominated sediment that anaerobically oxidize methane. Appl Environ Microbiol. 2011 Oct; 77(19):6780-7.
        View in: PubMed
      36. DeAngelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol. 2011 Sep; 77(18):6313-22.
        View in: PubMed
      37. Banning NC, Gleeson DB, Grigg AH, Grant CD, Andersen GL, Brodie EL, Murphy DV. Soil microbial community successional patterns during forest ecosystem restoration. Appl Environ Microbiol. 2011 Sep; 77(17):6158-64.
        View in: PubMed
      38. Kelly LC, Cockell CS, Herrera-Belaroussi A, Piceno Y, Andersen G, DeSantis T, Brodie E, Thorsteinsson T, Marteinsson V, Poly F, LeRoux X. Bacterial diversity of terrestrial crystalline volcanic rocks, Iceland. Microb Ecol. 2011 Jul; 62(1):69-79.
        View in: PubMed
      39. Mohanty SR, Kollah B, Brodie EL, Hazen TC, Roden EE. 16S rRNA gene microarray analysis of microbial communities in ethanol-stimulated subsurface sediment. Microbes Environ. 2011; 26(3):261-5.
        View in: PubMed
      40. Goldfarb KC, Karaoz U, Hanson CA, Santee CA, Bradford MA, Treseder KK, Wallenstein MD, Brodie EL. Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front Microbiol. 2011; 2:94.
        View in: PubMed
      41. DeSantis TZ, Keller K, Karaoz U, Alekseyenko AV, Singh NN, Brodie EL, Pei Z, Andersen GL, Larsen N. Simrank: Rapid and sensitive general-purpose k-mer search tool. BMC Ecol. 2011; 11:11.
        View in: PubMed
      42. Paszczynski AJ, Paidisetti R, Johnson AK, Crawford RL, Colwell FS, Green T, Delwiche M, Lee H, Newby D, Brodie EL, Conrad M. Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase. Biodegradation. 2011 Nov; 22(6):1045-59.
        View in: PubMed
      43. Lee PK, Cheng D, Hu P, West KA, Dick GJ, Brodie EL, Andersen GL, Zinder SH, He J, Alvarez-Cohen L. Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. ISME J. 2011 Jun; 5(6):1014-24.
        View in: PubMed
      44. Huang YJ, Nelson CE, Brodie EL, Desantis TZ, Baek MS, Liu J, Woyke T, Allgaier M, Bristow J, Wiener-Kronish JP, Sutherland ER, King TS, Icitovic N, Martin RJ, Calhoun WJ, Castro M, Denlinger LC, Dimango E, Kraft M, Peters SP, Wasserman SI, Wechsler ME, Boushey HA, Lynch SV. Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol. 2011 Feb; 127(2):372-381.e1-3.
        View in: PubMed
      45. Chourey K, Jansson J, VerBerkmoes N, Shah M, Chavarria KL, Tom LM, Brodie EL, Hettich RL. Direct cellular lysis/protein extraction protocol for soil metaproteomics. J Proteome Res. 2010 Dec 3; 9(12):6615-22.
        View in: PubMed
      46. Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Anal Chem. 2010 Nov 1; 82(21):9034-42.
        View in: PubMed
      47. Maldonado-Contreras A, Goldfarb KC, Godoy-Vitorino F, Karaoz U, Contreras M, Blaser MJ, Brodie EL, Dominguez-Bello MG. Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J. 2011 Apr; 5(4):574-9.
        View in: PubMed
      48. Han R, Geller JT, Yang L, Brodie EL, Chakraborty R, Larsen JT, Beller HR. Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad. Environ Sci Technol. 2010 Oct 1; 44(19):7491-7.
        View in: PubMed
      49. Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ, Brodie EL, Malamud D, Poles MA, Pei Z. Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol. 2010 Sep 7; 16(33):4135-44.
        View in: PubMed
      50. Fujimura KE, Johnson CC, Ownby DR, Cox MJ, Brodie EL, Havstad SL, Zoratti EM, Woodcroft KJ, Bobbitt KR, Wegienka G, Boushey HA, Lynch SV. Man's best friend? The effect of pet ownership on house dust microbial communities. J Allergy Clin Immunol. 2010 Aug; 126(2):410-2, 412.e1-3.
        View in: PubMed
      51. Wu CH, Sercu B, Van de Werfhorst LC, Wong J, DeSantis TZ, Brodie EL, Hazen TC, Holden PA, Andersen GL. Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. PLoS One. 2010; 5(6):e11285.
        View in: PubMed
      52. Cox MJ, Allgaier M, Taylor B, Baek MS, Huang YJ, Daly RA, Karaoz U, Andersen GL, Brown R, Fujimura KE, Wu B, Tran D, Koff J, Kleinhenz ME, Nielson D, Brodie EL, Lynch SV. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One. 2010; 5(6):e11044.
        View in: PubMed
      53. Lemon KP, Klepac-Ceraj V, Schiffer HK, Brodie EL, Lynch SV, Kolter R. Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio. 2010; 1(3).
        View in: PubMed
      54. Conrad ME, Brodie EL, Radtke CW, Bill M, Delwiche ME, Lee MH, Swift DL, Colwell FS. Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater. Environ Sci Technol. 2010 Jun 15; 44(12):4697-704.
        View in: PubMed
      55. Pei AY, Oberdorf WE, Nossa CW, Agarwal A, Chokshi P, Gerz EA, Jin Z, Lee P, Yang L, Poles M, Brown SM, Sotero S, Desantis T, Brodie E, Nelson K, Pei Z. Diversity of 16S rRNA genes within individual prokaryotic genomes. Appl Environ Microbiol. 2010 Jun; 76(12):3886-97.
        View in: PubMed
      56. Klepac-Ceraj V, Lemon KP, Martin TR, Allgaier M, Kembel SW, Knapp AA, Lory S, Brodie EL, Lynch SV, Bohannan BJ, Green JL, Maurer BA, Kolter R. Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol. 2010 May; 12(5):1293-303.
        View in: PubMed
      57. Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie EL, Desantis TZ, Andersen GL, van Veen JA, Kowalchuk GA. Microbial secondary succession in a chronosequence of chalk grasslands. ISME J. 2010 May; 4(5):711-5.
        View in: PubMed
      58. Godoy-Vitorino F, Goldfarb KC, Brodie EL, Garcia-Amado MA, Michelangeli F, Domínguez-Bello MG. Developmental microbial ecology of the crop of the folivorous hoatzin. ISME J. 2010 May; 4(5):611-20.
        View in: PubMed
      59. Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV. A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS. 2010 Feb; 14(1):9-59.
        View in: PubMed
      60. Cox MJ, Huang YJ, Fujimura KE, Liu JT, McKean M, Boushey HA, Segal MR, Brodie EL, Cabana MD, Lynch SV. Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One. 2010; 5(1):e8745.
        View in: PubMed
      61. Fan C, Lee PK, Ng WJ, Alvarez-Cohen L, Brodie EL, Andersen GL, He J. Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs). Appl Microbiol Biotechnol. 2009 Nov; 85(1):185-95.
        View in: PubMed
      62. Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell. 2009 Oct 30; 139(3):485-98.
        View in: PubMed
      63. Cruz-Martínez K, Suttle KB, Brodie EL, Power ME, Andersen GL, Banfield JF. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J. 2009 Jun; 3(6):738-44.
        View in: PubMed
      64. Shawkey MD, Firestone MK, Brodie EL, Beissinger SR. Avian incubation inhibits growth and diversification of bacterial assemblages on eggs. PLoS One. 2009; 4(2):e4522.
        View in: PubMed
      65. Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J. 2009 May; 3(5):512-21.
        View in: PubMed
      66. Tokunaga TK, Wan J, Kim Y, Daly RA, Brodie EL, Hazen TC, Herman D, Firestone MK. Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment. Environ Sci Technol. 2008 Dec 1; 42(23):8901-7.
        View in: PubMed
      67. Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA. Environmental microarray analyses of Antarctic soil microbial communities. ISME J. 2009 Mar; 3(3):340-51.
        View in: PubMed
      68. Faybishenko B, Hazen TC, Long PE, Brodie EL, Conrad ME, Hubbard SS, Christensen JN, Joyner D, Borglin SE, Chakraborty R, Williams KH, Peterson JE, Chen J, Brown ST, Tokunaga TK, Wan J, Firestone M, Newcomer DR, Resch CT, Cantrell KJ, Willett A, Koenigsberg S. In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol. 2008 Nov 15; 42(22):8478-85.
        View in: PubMed
      69. DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. ISME J. 2009 Feb; 3(2):168-78.
        View in: PubMed
      70. Wan J, Tokunaga TK, Kim Y, Brodie E, Daly R, Hazen TC, Firestone MK. Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment. Environ Sci Technol. 2008 Oct 15; 42(20):7573-9.
        View in: PubMed
      71. Chivian D, Brodie EL, Alm EJ, Culley DE, Dehal PS, DeSantis TZ, Gihring TM, Lapidus A, Lin LH, Lowry SR, Moser DP, Richardson PM, Southam G, Wanger G, Pratt LM, Andersen GL, Hazen TC, Brockman FJ, Arkin AP, Onstott TC. Environmental genomics reveals a single-species ecosystem deep within Earth. Science. 2008 Oct 10; 322(5899):275-8.
        View in: PubMed
      72. Wrighton KC, Agbo P, Warnecke F, Weber KA, Brodie EL, DeSantis TZ, Hugenholtz P, Andersen GL, Coates JD. A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J. 2008 Nov; 2(11):1146-56.
        View in: PubMed
      73. West KA, Johnson DR, Hu P, DeSantis TZ, Brodie EL, Lee PK, Feil H, Andersen GL, Zinder SH, Alvarez-Cohen L. Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Appl Environ Microbiol. 2008 Jun; 74(11):3533-40.
        View in: PubMed
      74. Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L. Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol. 2008 May; 74(9):2864-72.
        View in: PubMed
      75. Lynch SV, Dixon L, Benoit MR, Brodie EL, Keyhan M, Hu P, Ackerley DF, Andersen GL, Matin A. Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms. Antimicrob Agents Chemother. 2007 Oct; 51(10):3650-8.
        View in: PubMed
      76. Moissl C, Osman S, La Duc MT, Dekas A, Brodie E, DeSantis T, Desantis T, Venkateswaran K. Molecular bacterial community analysis of clean rooms where spacecraft are assembled. FEMS Microbiol Ecol. 2007 Sep; 61(3):509-21.
        View in: PubMed
      77. Flanagan JL, Brodie EL, Weng L, Lynch SV, Garcia O, Brown R, Hugenholtz P, DeSantis TZ, Andersen GL, Wiener-Kronish JP, Bristow J. Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa. J Clin Microbiol. 2007 Jun; 45(6):1954-62.
        View in: PubMed
      78. DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol. 2007 Apr; 53(3):371-83.
        View in: PubMed
      79. Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL. Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci U S A. 2007 Jan 2; 104(1):299-304.
        View in: PubMed
      80. Lin LH, Wang PL, Rumble D, Lippmann-Pipke J, Boice E, Pratt LM, Sherwood Lollar B, Brodie EL, Hazen TC, Andersen GL, DeSantis TZ, Moser DP, Kershaw D, Onstott TC. Long-term sustainability of a high-energy, low-diversity crustal biome. Science. 2006 Oct 20; 314(5798):479-82.
        View in: PubMed
      81. Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol. 2006 Sep; 72(9):6288-98.
        View in: PubMed
      82. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006 Jul; 72(7):5069-72.
        View in: PubMed
      83. DeSantis TZ, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, Andersen GL. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res. 2006 Jul 1; 34(Web Server issue):W394-9.
        View in: PubMed
      84. Kennedy N, Brodie E, Connolly J, Clipson N. Seasonal influences on fungal community structure in unimproved and improved upland grassland soils. Can J Microbiol. 2006 Jul; 52(7):689-94.
        View in: PubMed
      85. Abulencia CB, Wyborski DL, Garcia JA, Podar M, Chen W, Chang SH, Chang HW, Watson D, Brodie EL, Hazen TC, Keller M. Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol. 2006 May; 72(5):3291-301.
        View in: PubMed
      86. Hu P, Brodie EL, Suzuki Y, McAdams HH, Andersen GL. Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus. J Bacteriol. 2005 Dec; 187(24):8437-49.
        View in: PubMed
      87. Tokunaga TK, Wan J, Pena J, Brodie EL, Firestone MK, Hazen TC, Sutton SR, Lanzirotti A, Newville M. Uranium reduction in sediments under diffusion-limited transport of organic carbon. Environ Sci Technol. 2005 Sep 15; 39(18):7077-83.
        View in: PubMed
      88. Wan J, Tokunaga TK, Brodie E, Wang Z, Zheng Z, Herman D, Hazen TC, Firestone MK, Sutton SR. Reoxidation of bioreduced uranium under reducing conditions. Environ Sci Technol. 2005 Aug 15; 39(16):6162-9.
        View in: PubMed
      89. Lynch SV, Brodie EL, Matin A. Role and regulation of sigma S in general resistance conferred by low-shear simulated microgravity in Escherichia coli. J Bacteriol. 2004 Dec; 186(24):8207-12.
        View in: PubMed
      90. Kennedy N, Brodie E, Connolly J, Clipson N. Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms. Environ Microbiol. 2004 Oct; 6(10):1070-80.
        View in: PubMed
      91. Brodie E, Edwards S, Clipson N. Soil fungal community structure in a temperate upland grassland soil. FEMS Microbiol Ecol. 2003 Jul 1; 45(2):105-14.
        View in: PubMed
      92. Brodie E, Edwards S, Clipson N. Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem. Microb Ecol. 2002 Oct; 44(3):260-70.
        View in: PubMed
      93. SOANES WA, BRODIE EL. An improved hemostatic retention catheter. J Urol. 1960 Jun; 83:872-3.
        View in: PubMed
      94. SOANES WA, BRODIE EL. Improved methods for the collection and evaluation of prostatic fluid. J Urol. 1960 Jun; 83:874-5.
        View in: PubMed
      95. ROSOKOFF J, BRODIE EL. Priapism complicating sickle cell anemia; a case report. J Urol. 1946 Nov; 56(5):544-6.
        View in: PubMed
      Eoin's Networks
      Related Concepts
      Derived automatically from this person's publications.
      _
      Co-Authors at LBL
      People in Profiles who have published with this person.
      _
      Related Authors at LBL
      People who share related concepts with this person.
      _
      Same Department
      Back to TOP