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    22833 Publications
    3073 Total Profiles
    24 Edited Profiles

    Brunk, Elizabeth

    TitleChemist Special PD
    SchoolLawrence Berkeley National Lab
    DepartmentPhysical Biosciences
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/486-7315

       Bibliographic 
       Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can sign in to make corrections and additions, or contact us for help.
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      1. Aziz RK, Khaw VL, Monk JM, Brunk E, Lewis R, Loh SI, Mishra A, Nagle AA, Satyanarayana C, Dhakshinamoorthy S, Luche M, Kitchen DB, Andrews KA, Palsson BØ, Charusanti P. Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. Front Microbiol. 2015; 6:958.
        View in: PubMed
      2. Latif H, Szubin R, Tan J, Brunk E, Lechner A, Zengler K, Palsson BO. A streamlined ribosome profiling protocol for the characterization of microorganisms. Biotechniques. 2014; 58(6):329-32.
        View in: PubMed
      3. Brunk E, Rothlisberger U. Mixed Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulations of Biological Systems in Ground and Electronically Excited States. Chem Rev. 2015 Jun 24; 115(12):6217-63.
        View in: PubMed
      4. Mentes A, Florescu AM, Brunk E, Wereszczynski J, Joyeux M, Andricioaei I. Free-energy landscape and characteristic forces for the initiation of DNA unzipping. Biophys J. 2015 Apr 7; 108(7):1727-38.
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      5. Guzmán GI, Utrilla J, Nurk S, Brunk E, Monk JM, Ebrahim A, Palsson BO, Feist AM. Model-driven discovery of underground metabolic functions in Escherichia coli. Proc Natl Acad Sci U S A. 2015 Jan 20; 112(3):929-34.
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      6. Bozkurt E, Ashari N, Browning N, Brunk E, Campomanesa P, Perez MA, Rothlisberger U. Lessons from nature: computational design of biomimetic compounds and processes. Chimia (Aarau). 2014 Sep; 68(9):642-7.
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      7. Brunk E, Kellett WF, Richards NG, Rothlisberger U. A mechanochemical switch to control radical intermediates. Biochemistry. 2014 Jun 17; 53(23):3830-8.
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      8. Brunk E, Mollwitz B, Rothlisberger U. Mechanism to trigger unfolding in O(6) -alkylguanine-DNA alkyltransferase. Chembiochem. 2013 Apr 15; 14(6):703-10.
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      9. Kellett WF, Brunk E, Desai BJ, Fedorov AA, Almo SC, Gerlt JA, Rothlisberger U, Richards NG. Computational, structural, and kinetic evidence that Vibrio vulnificus FrsA is not a cofactor-independent pyruvate decarboxylase. Biochemistry. 2013 Mar 19; 52(11):1842-4.
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      10. Brunk E, Arey JS, Rothlisberger U. Role of environment for catalysis of the DNA repair enzyme MutY. J Am Chem Soc. 2012 May 23; 134(20):8608-16.
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      11. Mollwitz B, Brunk E, Schmitt S, Pojer F, Bannwarth M, Schiltz M, Rothlisberger U, Johnsson K. Directed evolution of the suicide protein O6-alkylguanine-DNA alkyltransferase for increased reactivity results in an alkylated protein with exceptional stability. Biochemistry. 2012 Feb 7; 51(5):986-94.
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      12. Brunk E, Neri M, Tavernelli I, Hatzimanikatis V, Rothlisberger U. Integrating computational methods to retrofit enzymes to synthetic pathways. Biotechnol Bioeng. 2012 Feb; 109(2):572-82.
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      13. Brunk E, Ashari N, Athri P, Campomanes P, de Carvalho FF, Curchod BF, Diamantis P, Doemer M, Garrec J, Laktionov A, Micciarelli M, Neri M, Palermo G, Penfold TJ, Vanni S, Tavernelli I, Rothlisberger U. Pushing the frontiers of first-principles based computer simulations of chemical and biological systems. Chimia (Aarau). 2011; 65(9):667-71.
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