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    Baidoo, Edward

    TitleBiochemist Research Sci/Engr
    SchoolLawrence Berkeley National Lab
    DepartmentBiological Systems & Eng
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone510/495-2420
    vCardDownload vCard

      Collapse Bibliographic 
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Eudes A, Dutta T, Deng K, Jacquet N, Sinha A, Benites VT, Baidoo E, Richel A, Sattler SE, Northen TR, Singh S, Simmons BA, Loqué D. SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum. PLoS One. 2017; 12(6):e0178160. PMID: 28594846.
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      2. Shymansky CM, Wang G, Baidoo E, Gin J, Apel AR, Mukhopadhyay A, García Martín H, Keasling JD. Flux-Enabled Exploration of the Role of Sip1 in Galactose Yeast Metabolism. Front Bioeng Biotechnol. 2017; 5:31. PMID: 28596955.
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      3. Mendez-Perez D, Alonso-Gutierrez J, Hu Q, Molinas M, Baidoo E, Wang G, Chan LJ, Adams PD, Petzold CJ, Keasling JD, Lee TS. Production of jet fuel precursor monoterpenoids from engineered Escherichia coli. Biotechnol Bioeng. 2017 Mar 28. PMID: 28369701.
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      4. Haushalter RW, Phelan RM, Hoh KM, Su C, Wang G, Baidoo E, Keasling JD. Production of odd-carbon dicarboxylic acids in Escherichia coli using an engineered biotin-fatty acid biosynthetic pathway. J Am Chem Soc. 2017 Mar 14. PMID: 28291347.
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      5. He L, Xiu Y, Jones JA, Baidoo E, Keasling JD, Tang YJ, Koffas MA. Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions. Metab Eng. 2016 Dec 22. PMID: 28017690.
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      6. Fang L, Ishikawa T, Rennie EA, Murawska GM, Lao J, Yan J, Tsai AY, Baidoo E, Xu J, Keasling JD, Demura T, Kawai-Yamada M, Scheller HV, Mortimer JC. Loss of Inositol Phosphorylceramide Sphingolipid Mannosylation Induces Plant Immune Responses and Reduces Cellulose Content in Arabidopsis. Plant Cell. 2016 Nov 28. PMID: 27895225.
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      7. Eudes A, Mouille M, Robinson DS, Benites VT, Wang G, Roux L, Tsai YL, Baidoo E, Chiu TY, Heazlewood JL, Scheller HV, Mukhopadhyay A, Keasling JD, Deutsch S, Loqué D. Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast. Microb Cell Fact. 2016 Nov 21; 15(1):198. PMID: 27871334.
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      8. Kirby J, Dietzel KL, Wichmann G, Chan R, Antipov E, Moss N, Baidoo E, Jackson P, Gaucher SP, Gottlieb S, LaBarge J, Mahatdejkul T, Hawkins KM, Muley S, Newman JD, Liu P, Keasling JD, Zhao L. Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae. Metab Eng. 2016 Oct 27. PMID: 27989805.
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      9. Hollinshead WD, Rodriguez S, Martin HG, Wang G, Baidoo E, Sale KL, Keasling JD, Mukhopadhyay A, Tang YJ. Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using ?pfk mutants. Biotechnol Biofuels. 2016; 9:212. PMID: 27766116.
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      10. Ghosh A, Ando D, Gin J, Runguphan W, Denby C, Wang G, Baidoo E, Shymansky C, Keasling JD, García Martín H. (13)C Metabolic Flux Analysis for Systematic Metabolic Engineering of S. cerevisiae for Overproduction of Fatty Acids. Front Bioeng Biotechnol. 2016; 4:76. PMID: 27761435.
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      11. Tartaglio V, Rennie EA, Cahoon R, Wang G, Baidoo E, Mortimer JC, Cahoon EB, Scheller HV. Glycosylation of inositol phosphorylceramide sphingolipids is required for normal growth and reproduction in Arabidopsis. Plant J. 2016 Sep 19. PMID: 27643972.
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      12. Yuzawa S, Deng K, Wang G, Baidoo E, Northen TR, Adams PD, Katz L, Keasling JD. Comprehensive in Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production. ACS Synth Biol. 2017 Jan 20; 6(1):139-147. PMID: 27548700.
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      13. Eudes A, Zhao N, Sathitsuksanoh N, Baidoo E, Lao J, Wang G, Yogiswara S, Lee TS, Singh S, Mortimer JC, Keasling JD, Simmons BA, Loqué D. Expression of S-adenosylmethionine Hydrolase in Tissues Synthesizing Secondary Cell Walls Alters Specific Methylated Cell Wall Fractions and Improves Biomass Digestibility. Front Bioeng Biotechnol. 2016; 4:58. PMID: 27486577.
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      14. Eng CH, Yuzawa S, Wang G, Baidoo E, Katz L, Keasling JD. Alteration of Polyketide Stereochemistry from anti to syn by a Ketoreductase Domain Exchange in a Type I Modular Polyketide Synthase Subunit. Biochemistry. 2016 Mar 29; 55(12):1677-80. PMID: 26976746.
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      15. Rodriguez S, Denby CM, Van Vu T, Baidoo E, Wang G, Keasling JD. ATP citrate lyase mediated cytosolic acetyl-CoA biosynthesis increases mevalonate production in Saccharomyces cerevisiae. Microb Cell Fact. 2016; 15(1):48. PMID: 26939608.
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      16. Eudes A, Pereira JH, Yogiswara S, Wang G, Teixeira Benites V, Baidoo E, Lee TS, Adams PD, Keasling JD, Loqué D. Exploiting the Substrate Promiscuity of Hydroxycinnamoyl-CoA:Shikimate Hydroxycinnamoyl Transferase to Reduce Lignin. Plant Cell Physiol. 2016 Mar; 57(3):568-79. PMID: 26858288.
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      17. Kang A, George KW, Wang G, Baidoo E, Keasling JD, Lee TS. Isopentenyl diphosphate (IPP)-bypass mevalonate pathways for isopentenol production. Metab Eng. 2016 Mar; 34:25-35. PMID: 26708516.
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      18. Eudes A, Teixeira Benites V, Wang G, Baidoo E, Lee TS, Keasling JD, Loqué D. Precursor-Directed Combinatorial Biosynthesis of Cinnamoyl, Dihydrocinnamoyl, and Benzoyl Anthranilates in Saccharomyces cerevisiae. PLoS One. 2015; 10(10):e0138972. PMID: 26430899.
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      19. Wenz C, Barbas C, López-Gonzálvez Á, Garcia A, Benavente F, Sanz-Nebot V, Blanc T, Freckleton G, Britz-McKibbin P, Shanmuganathan M, de l'Escaille F, Far J, Haselberg R, Huang S, Huhn C, Pattky M, Michels D, Mou S, Yang F, Neusuess C, Tromsdorf N, Baidoo E, Keasling JD, Park SS. Interlaboratory study to evaluate the robustness of capillary electrophoresis-mass spectrometry for peptide mapping. J Sep Sci. 2015 Jul 06. PMID: 26147246.
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      20. George KW, Thompson MG, Kang A, Baidoo E, Wang G, Chan LJ, Adams PD, Petzold CJ, Keasling JD, Soon Lee T. Metabolic engineering for the high-yield production of isoprenoid-based C5 alcohols in E. coli. Sci Rep. 2015; 5:11128. PMID: 26052683.
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      21. Chubukov V, Mingardon F, Schackwitz W, Baidoo E, Alonso-Gutierrez J, Hu Q, Lee TS, Keasling JD, Mukhopadhyay A. Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC. Appl Environ Microbiol. 2015 Jul 15; 81(14):4690-6. PMID: 25934627.
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      22. Walley J, Xiao Y, Wang JZ, Baidoo E, Keasling JD, Shen Z, Briggs SP, Dehesh K. Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum. Proc Natl Acad Sci U S A. 2015 May 12; 112(19):6212-7. PMID: 25922532.
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      23. Vega-Sánchez ME, Loqué D, Lao J, Catena M, Verhertbruggen Y, Herter T, Yang F, Harholt J, Ebert B, Baidoo E, Keasling JD, Scheller HV, Heazlewood JL, Ronald PC. Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls. Plant Biotechnol J. 2015 Sep; 13(7):903-14. PMID: 25586315.
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      24. Eudes A, Sathitsuksanoh N, Baidoo E, George A, Liang Y, Yang F, Singh S, Keasling JD, Simmons BA, Loqué D. Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency. Plant Biotechnol J. 2015 Dec; 13(9):1241-50. PMID: 25583257.
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      25. Kirby J, Nishimoto M, Chow RW, Baidoo E, Wang G, Martin J, Schackwitz W, Chan R, Fortman JL, Keasling JD. Enhancing Terpene Yield from Sugars via Novel Routes to 1-Deoxy-d-Xylulose 5-Phosphate. Appl Environ Microbiol. 2015 Jan 1; 81(1):130-8. PMID: 25326299.
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      26. Goh EB, Baidoo E, Burd H, Lee TS, Keasling JD, Beller HR. Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies. Metab Eng. 2014 Nov; 26:67-76. PMID: 25241399.
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      27. Weaver LJ, Sousa MM, Wang G, Baidoo E, Petzold CJ, Keasling JD. A kinetic-based approach to understanding heterologous mevalonate pathway function in E. coli. Biotechnol Bioeng. 2015 Jan; 112(1):111-9. PMID: 24981116.
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      28. Rajeev L, Luning EG, Altenburg S, Zane GM, Baidoo E, Catena M, Keasling JD, Wall JD, Fields MW, Mukhopadhyay A. Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium. Front Microbiol. 2014; 5:382. PMID: 25120537.
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      29. George KW, Chen A, Jain A, Batth TS, Baidoo E, Wang G, Adams PD, Petzold CJ, Keasling JD, Lee TS. Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production. Biotechnol Bioeng. 2014 Aug; 111(8):1648-58. PMID: 24615242.
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      30. Baidoo E, Xiao Y, Dehesh K, Keasling JD. Metabolite profiling of plastidial deoxyxylulose-5-phosphate pathway intermediates by liquid chromatography and mass spectrometry. Methods Mol Biol. 2014; 1153:57-76. PMID: 24777790.
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      31. Ito J, Herter T, Baidoo E, Lao J, Vega-Sánchez ME, Michelle Smith-Moritz A, Adams PD, Keasling JD, Usadel B, Petzold CJ, Heazlewood JL. Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry. Anal Biochem. 2014 Mar 1; 448:14-22. PMID: 24299991.
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      32. Nowroozi FF, Baidoo E, Ermakov S, Redding-Johanson AM, Batth TS, Petzold CJ, Keasling JD. Metabolic pathway optimization using ribosome binding site variants and combinatorial gene assembly. Appl Microbiol Biotechnol. 2014 Feb; 98(4):1567-81. PMID: 24257840.
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      33. Dahl RH, Zhang F, Alonso-Gutierrez J, Baidoo E, Batth TS, Redding-Johanson AM, Petzold CJ, Mukhopadhyay A, Lee TS, Adams PD, Keasling JD. Engineering dynamic pathway regulation using stress-response promoters. Nat Biotechnol. 2013 Nov; 31(11):1039-46. PMID: 24142050.
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      34. Eudes A, Juminaga D, Baidoo E, Collins FW, Keasling JD, Loqué D. Production of hydroxycinnamoyl anthranilates from glucose in Escherichia coli. Microb Cell Fact. 2013; 12:62. PMID: 23806124.
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      35. Bokinsky G, Baidoo E, Akella S, Burd H, Weaver D, Alonso-Gutierrez J, García-Martín H, Lee TS, Keasling JD. HipA-triggered growth arrest and ß-lactam tolerance in Escherichia coli are mediated by RelA-dependent ppGpp synthesis. J Bacteriol. 2013 Jul; 195(14):3173-82. PMID: 23667235.
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      36. Zhou A, Baidoo E, He Z, Mukhopadhyay A, Baumohl JK, Benke P, Joachimiak MP, Xie M, Song R, Arkin AP, Hazen TC, Keasling JD, Wall JD, Stahl DA, Zhou J. Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution. ISME J. 2013 Sep; 7(9):1790-802. PMID: 23575373.
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      37. Boutigny S, Saini A, Baidoo E, Yeung N, Keasling JD, Butland G. Physical and functional interactions of a monothiol glutaredoxin and an iron sulfur cluster carrier protein with the sulfur-donating radical S-adenosyl-L-methionine enzyme MiaB. J Biol Chem. 2013 May 17; 288(20):14200-11. PMID: 23543739.
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      38. Gille S, Sharma V, Baidoo E, Keasling JD, Scheller HV, Pauly M. Arabinosylation of a Yariv-precipitable cell wall polymer impacts plant growth as exemplified by the Arabidopsis glycosyltransferase mutant ray1. Mol Plant. 2013 Jul; 6(4):1369-72. PMID: 23396039.
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      39. Chiniquy D, Sharma V, Schultink A, Baidoo E, Rautengarten C, Cheng K, Carroll A, Ulvskov P, Harholt J, Keasling JD, Pauly M, Scheller HV, Ronald PC. XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan. Proc Natl Acad Sci U S A. 2012 Oct 16; 109(42):17117-22. PMID: 23027943.
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      40. Perez-Gil J, Uros EM, Sauret-Güeto S, Lois LM, Kirby J, Nishimoto M, Baidoo E, Keasling JD, Boronat A, Rodriguez-Concepcion M. Mutations in Escherichia coli aceE and ribB genes allow survival of strains defective in the first step of the isoprenoid biosynthesis pathway. PLoS One. 2012; 7(8):e43775. PMID: 22928031.
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      41. Walker CB, Redding-Johanson AM, Baidoo E, Rajeev L, He Z, Hendrickson EL, Joachimiak MP, Stolyar S, Arkin AP, Leigh JA, Zhou J, Keasling JD, Mukhopadhyay A, Stahl DA. Functional responses of methanogenic archaea to syntrophic growth. ISME J. 2012 Nov; 6(11):2045-55. PMID: 22739494.
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      42. Xiao Y, Savchenko T, Baidoo E, Chehab WE, Hayden DM, Tolstikov V, Corwin JA, Kliebenstein DJ, Keasling JD, Dehesh K. Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes. Cell. 2012 Jun 22; 149(7):1525-35. PMID: 22726439.
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      43. Rennie EA, Hansen SF, Baidoo E, Hadi MZ, Keasling JD, Scheller HV. Three members of the Arabidopsis glycosyltransferase family 8 are xylan glucuronosyltransferases. Plant Physiol. 2012 Aug; 159(4):1408-17. PMID: 22706449.
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      44. Baidoo E, Benke PI, Keasling JD. Mass spectrometry-based microbial metabolomics. Methods Mol Biol. 2012; 881:215-78. PMID: 22639216.
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      45. Rautengarten C, Ebert B, Ouellet M, Nafisi M, Baidoo E, Benke P, Stranne M, Mukhopadhyay A, Keasling JD, Sakuragi Y, Scheller HV. Arabidopsis Deficient in Cutin Ferulate encodes a transferase required for feruloylation of ?-hydroxy fatty acids in cutin polyester. Plant Physiol. 2012 Feb; 158(2):654-65. PMID: 22158675.
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      46. Kumar S, Hahn FM, Baidoo E, Kahlon TS, Wood DF, McMahan CM, Cornish K, Keasling JD, Daniell H, Whalen MC. Remodeling the isoprenoid pathway in tobacco by expressing the cytoplasmic mevalonate pathway in chloroplasts. Metab Eng. 2012 Jan; 14(1):19-28. PMID: 22123257.
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      47. Goh EB, Baidoo E, Keasling JD, Beller HR. Engineering of bacterial methyl ketone synthesis for biofuels. Appl Environ Microbiol. 2012 Jan; 78(1):70-80. PMID: 22038610.
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      48. Juminaga D, Baidoo E, Redding-Johanson AM, Batth TS, Burd H, Mukhopadhyay A, Petzold CJ, Keasling JD. Modular engineering of L-tyrosine production in Escherichia coli. Appl Environ Microbiol. 2012 Jan; 78(1):89-98. PMID: 22020510.
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      49. Eudes A, Baidoo E, Yang F, Burd H, Hadi MZ, Collins FW, Keasling JD, Loqué D. Production of tranilast [N-(3',4'-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae. Appl Microbiol Biotechnol. 2011 Feb; 89(4):989-1000. PMID: 20972784.
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      50. He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, Keasling JD, Arkin AP, Zhou J. Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Appl Environ Microbiol. 2010 Mar; 76(5):1574-86. PMID: 20038696.
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      51. Tang YJ, Martin HG, Myers S, Rodriguez S, Baidoo E, Keasling JD. Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling. Mass Spectrom Rev. 2009 Mar-Apr; 28(2):362-75. PMID: 19025966.
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      52. Garcia DE, Baidoo E, Benke PI, Pingitore F, Tang YJ, Villa S, Keasling JD. Separation and mass spectrometry in microbial metabolomics. Curr Opin Microbiol. 2008 Jun; 11(3):233-9. PMID: 18538626.
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      53. Baidoo E, Benke PI, Neusüss C, Pelzing M, Kruppa G, Leary JA, Keasling JD. Capillary electrophoresis-fourier transform ion cyclotron resonance mass spectrometry for the identification of cationic metabolites via a pH-mediated stacking-transient isotachophoretic method. Anal Chem. 2008 May 1; 80(9):3112-22. PMID: 18384203.
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      54. Mahendra S, Petzold CJ, Baidoo E, Keasling JD, Alvarez-Cohen L. Identification of the intermediates of in vivo oxidation of 1 ,4-dioxane by monooxygenase-containing bacteria. Environ Sci Technol. 2007 Nov 1; 41(21):7330-6. PMID: 18044507.
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      55. Mukhopadhyay A, He Z, Alm EJ, Arkin AP, Baidoo E, Borglin SC, Chen W, Hazen TC, He Q, Holman HY, Huang K, Huang R, Joyner DC, Katz N, Keller M, Oeller P, Redding A, Sun J, Wall J, Wei J, Yang Z, Yen HC, Zhou J, Keasling JD. Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol. 2006 Jun; 188(11):4068-78. PMID: 16707698.
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