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    Hoover, Cindi

    TitleResearch Assoc Principal
    SchoolLawrence Berkeley National Lab
    DepartmentJoint Genome Institute
    Address1 Cyclotron Road
    Berkeley CA 94720
    Phone925/927-2558
    vCardDownload vCard

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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover C, Lorente-Galdos B, Nedoluzhko A, Boulygina E, Tsygankova S, Neuditschko M, Jagannathan V, Thèves C, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Sicheritz-Ponten T, Popov R, Grigoriev S, Alekseev AN, Rubin EM, McCue M, Rieder S, Leeb T, Tikhonov A, Crubézy E, Slatkin M, Marques-Bonet T, Nielsen R, Willerslev E, Kantanen J, Prokhortchouk E, Orlando L. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proc Natl Acad Sci U S A. 2015 Dec 15; 112(50):E6889-97. PMID: 26598656; PMCID: PMC4687531.
      2. Yung MC, Park DM, Overton KW, Blow MJ, Hoover C, Smit J, Murray SR, Ricci DP, Christen B, Bowman GR, Jiao Y. Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance. J Bacteriol. 2015 Oct; 197(19):3160-72. PMID: 26195598; PMCID: PMC4560278.
      3. Wetmore KM, Price MN, Waters RJ, Lamson JS, He J, Hoover C, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. MBio. 2015 May 12; 6(3):e00306-15. PMID: 25968644; PMCID: PMC4436071.
      4. Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, Stenderup J, Hoover C, Rubin CJ, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T, Gilbert MT, Nielsen R, Excoffier L, Willerslev E, Shapiro B, Orlando L. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proc Natl Acad Sci U S A. 2014 Dec 30; 111(52):E5661-9. PMID: 25512547; PMCID: PMC4284583.
      5. Pedersen JS, Valen E, Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover C, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L. Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res. 2014 Mar; 24(3):454-66. PMID: 24299735; PMCID: PMC3941110.
      6. Lennon NJ, Lintner RE, Anderson S, Alvarez P, Barry A, Brockman W, Daza R, Erlich RL, Giannoukos G, Green L, Hollinger A, Hoover C, Jaffe DB, Juhn F, McCarthy D, Perrin D, Ponchner K, Powers TL, Rizzolo K, Robbins D, Ryan E, Russ C, Sparrow T, Stalker J, Steelman S, Weiand M, Zimmer A, Henn MR, Nusbaum C, Nicol R. A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454. Genome Biol. 2010; 11(2):R15. PMID: 20137071; PMCID: PMC2872875.
      7. Hoover C, Slattery M, Targett NM, Marsh AG. Transcriptome and metabolite responses to predation in a South pacific soft coral. Biol Bull. 2008 Jun; 214(3):319-28. PMID: 18574108.
        View in: PubMed
      8. Burnett KG, Bain LJ, Baldwin WS, Callard GV, Cohen S, Di Giulio RT, Evans DH, Gómez-Chiarri M, Hahn ME, Hoover C, Karchner SI, Katoh F, Maclatchy DL, Marshall WS, Meyer JN, Nacci DE, Oleksiak MF, Rees BB, Singer TD, Stegeman JJ, Towle DW, Van Veld PA, Vogelbein WK, Whitehead A, Winn RN, Crawford DL. Fundulus as the premier teleost model in environmental biology: opportunities for new insights using genomics. Comp Biochem Physiol Part D Genomics Proteomics. 2007 Dec; 2(4):257-86. PMID: 18071578.
        View in: PubMed
      9. Hoover C, Slattery M, Marsh AG. A functional approach to transcriptome profiling: linking gene expression patterns to metabolites that matter. Mar Biotechnol (NY). 2007 Jul-Aug; 9(4):411-9. PMID: 17473905.
        View in: PubMed
      10. Hoover C, Slattery M, Marsh AG. Gene expression profiling of two related soft corals, Sinularia polydactyla and S. maxima, and their putative hybrid at different life-history stages. Comp Biochem Physiol Part D Genomics Proteomics. 2007 Jun; 2(2):135-43. PMID: 20483287.
        View in: PubMed
      11. Hoover C, Slattery M, Marsh AG. Profiling transcriptome complexity and secondary metabolite synthesis in a benthic soft coral, Sinularia polydactyla. Mar Biotechnol (NY). 2007 Mar-Apr; 9(2):166-78. PMID: 17186429.
        View in: PubMed
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